Rorug04G0309900

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007435
Physical Location & Seq
Reverse (-)
48527080 .. 48528327
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0309900.1

Sequence Viewer

Length: 531 bp
ATGGACACAGGGGATTTAACTATTCAAGTTCTCAACCTTTCTCCAAGGGTGACCCTTAAAGACTTGATTACCTTCTTCTCTTATTGTGGAACTGTTCACAATGTCCAGCTCTTGAGAGATAAAGAGCAATCGCCCTATGCTTTAGTGACTTTTGGGCAGCCTTATGCTTTCCAAACTGCTCTTCTCCTTGATGATGCTGTGTTTGGAGGGAAACCCATTTGCGTATTACCTGCATGTGTTATAAAGATTCCTATTGAATCAGATGACGACACTGATGAGTCTCAGAGCAAAAGCCAAGGACAAAACATGTCAATGTTGAAGAAAAGCAGGGATGAGTTGGAGGAGAGCTTGAAGCTTTCGTCCGAGAAAGGAAGAAGAGTGGTAATTGAACAAGCAAGATCAGCCATTTATGCAGTTGAGCAAGCAGCAGGTCGAATGGGAAGTGCCATCATGAACAACAACTTCATGTCAAATATACTTGACAAAGCCTCGAGATCTGCCTCAGACTTCGGAACTAAGAAGATCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

5.47

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 73 7.1e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
Acc36I ACCTGC 2 cut(s) 238, 419
AclWI GGATC 1 cut(s) 517
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 5 cut(s) 26, 257, 319, 352, 389
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 3 cut(s) 109, 348, 355
AluI AGCT 3 cut(s) 109, 348, 355
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 157, 425
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 490
BbvI GCAGC 2 cut(s) 169, 437
BccI CCATC 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 285
BfuAI ACCTGC 2 cut(s) 238, 419
BglII AGATCT 1 cut(s) 494
BisI GCNGC 2 cut(s) 158, 426
BlsI GCNGC 2 cut(s) 159, 427
BmeT110I CYCGRG 1 cut(s) 490
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 44, 295
BseDI CCNNGG 2 cut(s) 44, 295
BseGI GGATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 296, 516
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 169, 437
BsiHKCI CYCGRG 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 285
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 3 cut(s) 398, 494, 522
BspCNI CTCAG 2 cut(s) 295, 515
BspHI TCATGA 1 cut(s) 450
BspMI ACCTGC 2 cut(s) 238, 419
BspPI GGATC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 44, 295
BssMI GATC 3 cut(s) 398, 494, 522
BssT1I CCWWGG 2 cut(s) 44, 295
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 186, 370
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 282, 502, 516
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 3 cut(s) 401, 497, 525
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 3 cut(s) 398, 494, 522
BstMWI GCNNNNNNNGC 2 cut(s) 401, 410
BstNSI RCATGY 2 cut(s) 237, 310
BstPI GGTNACC 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 169, 437
BstX2I RGATCY 2 cut(s) 494, 522
BstYI RGATCY 2 cut(s) 494, 522
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 2 cut(s) 238, 419
Cac8I GCNNGC 1 cut(s) 423
CciI TCATGA 1 cut(s) 450
CviAII CATG 4 cut(s) 234, 307, 451, 466
CviJI RGCY 7 cut(s) 109, 160, 294, 348, 355, 404, 488
CviKI_1 RGCY 7 cut(s) 109, 160, 294, 348, 355, 404, 488
DdeI CTNAG 3 cut(s) 282, 502, 516
DpnI GATC 3 cut(s) 400, 496, 524
DpnII GATC 3 cut(s) 398, 494, 522
Eam1104I CTCTTC 2 cut(s) 186, 370
EarI CTCTTC 2 cut(s) 186, 370
Eco130I CCWWGG 2 cut(s) 44, 295
Eco88I CYCGRG 1 cut(s) 490
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 44, 295
ErhI CCWWGG 2 cut(s) 44, 295
FaeI CATG 4 cut(s) 237, 310, 454, 469
FaiI YATR 9 cut(s) 138, 165, 235, 242, 308, 411, 452, 467, 476
FatI CATG 4 cut(s) 233, 306, 450, 465
Fnu4HI GCNGC 2 cut(s) 158, 426
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 158, 426
GluI GCNGC 2 cut(s) 158, 426
Hin1II CATG 4 cut(s) 237, 310, 454, 469
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 3 cut(s) 247, 257, 278
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 5 cut(s) 262, 285, 364, 505, 512
Hpy188III TCNNGA 3 cut(s) 112, 451, 492
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 233, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 410
HpyF3I CTNAG 3 cut(s) 282, 502, 516
Hsp92II CATG 4 cut(s) 237, 310, 454, 469
Kzo9I GATC 3 cut(s) 398, 494, 522
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 119, 243, 313, 414
Lsp1109I GCAGC 2 cut(s) 169, 437
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 49, 145
MalI GATC 3 cut(s) 400, 496, 524
MboI GATC 3 cut(s) 398, 494, 522
MboII GAAGA 5 cut(s) 67, 173, 331, 384, 387
MflI RGATCY 2 cut(s) 494, 522
MluCI AATT 1 cut(s) 384
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 4 cut(s) 200, 334, 499, 511
MseI TTAA 2 cut(s) 17, 57
MslI CAYNNNNRTG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 401, 410
NdeII GATC 3 cut(s) 398, 494, 522
NlaIII CATG 4 cut(s) 237, 310, 454, 469
NmuCI GTSAC 2 cut(s) 49, 145
NspI RCATGY 2 cut(s) 237, 310
PaeR7I CTCGAG 1 cut(s) 490
PagI TCATGA 1 cut(s) 450
PciI ACATGT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 247, 257
PkrI GCNGC 2 cut(s) 159, 427
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PscI ACATGT 1 cut(s) 306
PsiI TTATAA 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 49
PsuI RGATCY 2 cut(s) 494, 522
RseI CAYNNNNRTG 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 17, 57
SatI GCNGC 2 cut(s) 158, 426
Sau3AI GATC 3 cut(s) 398, 494, 522
SchI GAGTC 1 cut(s) 287
SetI ASST 7 cut(s) 39, 74, 111, 232, 350, 357, 433
SfaNI GCATC 1 cut(s) 184
Sfr274I CTCGAG 1 cut(s) 490
SlaI CTCGAG 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 112, 490
SmoI CTYRAG 2 cut(s) 112, 490
Sse9I AATT 1 cut(s) 384
StyI CCWWGG 2 cut(s) 44, 295
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 433, 491
TasI AATT 1 cut(s) 384
TfiI GAWTC 2 cut(s) 247, 257
Tru1I TTAA 2 cut(s) 17, 57
Tru9I TTAA 2 cut(s) 17, 57
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 49, 145
TseI GCWGC 2 cut(s) 157, 425
Tsp45I GTSAC 2 cut(s) 49, 145
TspDTI ATGAA 2 cut(s) 454, 467
TspRI CASTG 1 cut(s) 277
XceI RCATGY 2 cut(s) 237, 310
XhoI CTCGAG 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.