Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019260.1

Orthogroup ID

OG0007435

Physical Location & Seq

Genomic Coordinates Forward (+)

22479 .. 25694

Gene Structure 3216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019260.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atggatcagcagcagagagcaggagctcctcagcatcgtcctccctctcccggtcaagaaggcggcggcggcggcggcggagaatcctccgccattctcgtcgtcctcgtcggtttcctcgccatcttcgctatggtggtgcttccatcaatatcaactattagcaatagcttttccatcctgcaccaagtccctgaaggtcatgttggtgtatattggagagggggtgctcttctaaagactattactgatccagggtttcatctcaagttgcctctgataacacagtatgaacctgttcaagtgacccttcagactgatcaagtgagggatattccttgcggtacaaaagggggtgtcatgatcaactttgaaaagattgaggttgtaaacaggctacgtaaggaatatgtgtatgagacacttctaaattatggtgtgcattatgacaacacatggatatatgacaaaattcatcacgagatcaatcagttctgcagctcgaattctctccaagatgtctatattgatgtgtttgatcagattgatgagaagatgaaagacgctctccaggttgactgtaccaaatatgccccaggtatcgaaattatcaatgtgcgtgtcacaaagccgaagatccctgatagtatcagacggaactttgagcagatggaggaggagcgcaccaaggtcttaattgctatagagagacagagggtggtggagaaagaagcagaaaccaagaaaaagatggctatcagtgaagccgagaagaatgccaacgtcagtaagattctcatggaacaaaagctgatggagaaggacagttccaggaggcaggaagaaatcgaaaatgccatgtatcttgctcgggagaagagtcttgcagatgctgatttctacaaagtaatgagagaggccgaagcaaacaagttgaagctcactccacagttccttgagcttaagtttattgaggccattgctgataatacaaaaatcttctttggggacaaggtacccaatatggttctagatcagaggttgctggggaactttttgaaggtttccagagaggtggccaaagatatatcccaaaaaacgtctggggaagctaaagcggacgatggagaagctggtaaccctgaagttgaatatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

386

Amino Acids

43.54

Weight (kDa)

5.49

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03510
fragaria_vesca	FvH4_4g30104
malus_domestica	MD13G1063100.v1.1 MD16G1061600.v1.1
prunus_persica	Prupe.1G286500_v2.0.a1
pyrus_communis	pycom13g05540
rosa_chinensis	RchiOBHm_Chr4g0438441 RchiOBHm_Chr4g0438461
rosa_laevigata	RLG00000006363 RLG00000006365
rosa_multiflora	Rmu_sc0002327.1_g000022 Rmu_sc0019260.1_g000001 Rmu_sc0019260.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379450 Rroxscaffold_5G00379470
rosa_rugosa	Rorug04G0309900 Rorug04G0310100
rosa_samantha	Rh4AG360800 Rh4CG385900 Rh4DG366700 Rh4DG366900
rosa_wichuraiana	Rw0G006540 Rw0G006560 Rw0G016490 Rw0G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1015
AccB1I	GGYRCC	1 cut(s)	1015
AciI	CCGC	9 cut(s)	63, 66, 69, 72, 75, 78, 90, 342, 1118
AclWI	GGATC	3 cut(s)	12, 245, 631
AcoI	YGGCCR	1 cut(s)	1077
AcsI	RAATTY	2 cut(s)	471, 505
AcuI	CTGAAG	2 cut(s)	216, 296
AfaI	GTAC	3 cut(s)	346, 583, 1017
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflII	CTTAAG	1 cut(s)	962
AgsI	TTSAA	5 cut(s)	302, 374, 937, 1060, 1151
AjnI	CCWGG	4 cut(s)	253, 570, 595, 830
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	8 cut(s)	26, 171, 501, 811, 940, 961, 1112, 1133
AluI	AGCT	8 cut(s)	26, 171, 501, 811, 940, 961, 1112, 1133
Alw21I	GWGCWC	2 cut(s)	28, 232
Alw26I	GTCTC	2 cut(s)	413, 703
AlwI	GGATC	3 cut(s)	12, 245, 631
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	3 cut(s)	918, 975, 1077
ApeKI	GCWGC	2 cut(s)	10, 498
ApoI	RAATTY	2 cut(s)	471, 505
Asp700I	GAANNNNTTC	1 cut(s)	297
Asp718I	GGTACC	1 cut(s)	1015
AspLEI	GCGC	1 cut(s)	684
AsuC2I	CCSGG	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	870
BalI	TGGCCA	1 cut(s)	1079
BanI	GGYRCC	1 cut(s)	1015
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	479
Bbv12I	GWGCWC	2 cut(s)	28, 232
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	22, 510
BccI	CCATC	7 cut(s)	131, 154, 185, 664, 745, 808, 1118
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	4 cut(s)	255, 572, 597, 832
BclI	TGATCA	3 cut(s)	319, 363, 538
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	413, 703
BfaI	CTAG	1 cut(s)	1031
BfmI	CTRYAG	2 cut(s)	496, 702
BfrI	CTTAAG	1 cut(s)	962
BisI	GCNGC	7 cut(s)	11, 64, 67, 70, 73, 76, 499
BlsI	GCNGC	7 cut(s)	12, 65, 68, 71, 74, 77, 500
Bme1390I	CCNGG	5 cut(s)	51, 255, 572, 597, 832
BmeT110I	CYCGRG	1 cut(s)	870
BmiI	GGNNCC	1 cut(s)	1017
BmrFI	CCNGG	5 cut(s)	51, 255, 572, 597, 832
BmsI	GCATC	2 cut(s)	43, 880
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	251, 977
BpuMI	CCSGG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	755
BsaJI	CCNNGG	3 cut(s)	254, 595, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	978
Bse8I	GATNNNNATC	1 cut(s)	755
BseBI	CCWGG	4 cut(s)	255, 572, 597, 832
BseDI	CCNNGG	3 cut(s)	254, 595, 687
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	755
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	3 cut(s)	18, 689, 692
BseXI	GCAGC	2 cut(s)	22, 510
BseYI	CCCAGC	1 cut(s)	1045
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	920, 977, 1079
BshNI	GGYRCC	1 cut(s)	1015
BsiHKAI	GWGCWC	2 cut(s)	28, 232
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	176, 1022
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	413, 703
BsmFI	GGGAC	2 cut(s)	176, 1022
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	3 cut(s)	920, 977, 1079
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	2 cut(s)	28, 232
Bsp143I	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
BspACI	CCGC	9 cut(s)	63, 66, 69, 72, 75, 78, 90, 342, 1118
BspANI	GGCC	3 cut(s)	920, 977, 1079
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	1017
BspMAI	CTGCAG	1 cut(s)	500
BspPI	GGATC	3 cut(s)	12, 245, 631
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	1015
BspTI	CTTAAG	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	978
BssECI	CCNNGG	3 cut(s)	254, 595, 687
BssMI	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	4 cut(s)	255, 572, 597, 832
Bst4CI	ACNGT	4 cut(s)	288, 581, 827, 951
Bst6I	CTCTTC	2 cut(s)	237, 872
BstAFI	CTTAAG	1 cut(s)	962
BstBAI	YACGTR	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	1136
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	8 cut(s)	7, 253, 322, 366, 486, 541, 639, 1036
BstMAI	GTCTC	2 cut(s)	413, 703
BstMBI	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 72, 75, 128
BstNI	CCWGG	4 cut(s)	255, 572, 597, 832
BstPI	GGTNACC	1 cut(s)	1136
BstSCI	CCNGG	5 cut(s)	49, 253, 570, 595, 830
BstSFI	CTRYAG	2 cut(s)	496, 702
BstSNI	TACGTA	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	22, 510
BstX2I	RGATCY	1 cut(s)	636
BstXI	CCANNNNNNTGG	1 cut(s)	1075
BstYI	RGATCY	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	920, 977, 1079
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	766
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	684
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	3 cut(s)	345, 582, 1016
CviAII	CATG	5 cut(s)	203, 361, 456, 799, 859
CviQI	GTAC	3 cut(s)	345, 582, 1016
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	8 cut(s)	6, 252, 321, 365, 485, 540, 638, 1035
DpnII	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
EaeI	YGGCCR	1 cut(s)	1077
Eam1104I	CTCTTC	2 cut(s)	237, 872
EarI	CTCTTC	2 cut(s)	237, 872
EciI	GGCGGA	2 cut(s)	79, 93
Ecl136II	GAGCTC	1 cut(s)	26
Eco105I	TACGTA	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	26
Eco57I	CTGAAG	2 cut(s)	216, 296
Eco88I	CYCGRG	1 cut(s)	870
Eco91I	GGTNACC	1 cut(s)	1136
EcoICRI	GAGCTC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	1136
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	4 cut(s)	253, 570, 595, 830
EcoT14I	CCWWGG	1 cut(s)	687
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	5 cut(s)	206, 364, 459, 802, 862
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	2 cut(s)	176, 1022
FatI	CATG	5 cut(s)	202, 360, 455, 798, 858
FbaI	TGATCA	3 cut(s)	319, 363, 538
Fnu4HI	GCNGC	7 cut(s)	11, 64, 67, 70, 73, 76, 499
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	7 cut(s)	11, 64, 67, 70, 73, 76, 499
FspBI	CTAG	1 cut(s)	1031
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	7 cut(s)	11, 64, 67, 70, 73, 76, 499
GsaI	CCCAGC	1 cut(s)	1049
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	920, 977, 1079
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	5 cut(s)	206, 364, 459, 802, 862
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	3 cut(s)	83, 793, 880
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	391, 577
Hpy188I	TCNGA	5 cut(s)	279, 315, 543, 653, 1038
Hpy188III	TCNNGA	6 cut(s)	56, 361, 479, 872, 1031, 1068
Hpy8I	GTNNAC	2 cut(s)	391, 577
Hpy99I	CGWCG	2 cut(s)	104, 113
HpyAV	CCTTC	5 cut(s)	53, 191, 320, 814, 1054
HpyCH4III	ACNGT	4 cut(s)	288, 581, 827, 951
HpyCH4IV	ACGT	3 cut(s)	400, 783, 1100
HpyCH4V	TGCA	4 cut(s)	184, 442, 498, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 72, 75, 128
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	3 cut(s)	400, 783, 1100
Hsp92II	CATG	5 cut(s)	206, 364, 459, 802, 862
HspAI	GCGC	1 cut(s)	682
KpnI	GGTACC	1 cut(s)	1019
Ksp22I	TGATCA	3 cut(s)	319, 363, 538
Kzo9I	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	3 cut(s)	23, 31, 679
Lsp1109I	GCAGC	2 cut(s)	22, 510
LweI	GCATC	2 cut(s)	43, 880
MaeI	CTAG	1 cut(s)	1031
MaeII	ACGT	3 cut(s)	400, 783, 1100
MaeIII	GTNAC	3 cut(s)	304, 622, 1136
MalI	GATC	8 cut(s)	6, 252, 321, 365, 485, 540, 638, 1035
MboI	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
MboII	GAAGA	8 cut(s)	118, 224, 565, 646, 784, 854, 889, 991
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	2 cut(s)	28, 232
MlsI	TGGCCA	1 cut(s)	1079
MluCI	AATT	5 cut(s)	430, 471, 505, 606, 696
MluNI	TGGCCA	1 cut(s)	1079
MlyI	GAGTC	1 cut(s)	889
Mox20I	TGGCCA	1 cut(s)	1079
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	1079
MseI	TTAA	2 cut(s)	695, 963
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	1079
MspCI	CTTAAG	1 cut(s)	962
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	5 cut(s)	51, 255, 572, 597, 832
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	4 cut(s)	255, 572, 597, 832
MwoI	GCNNNNNNNGC	4 cut(s)	69, 72, 75, 128
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
NlaIII	CATG	5 cut(s)	206, 364, 459, 802, 862
NlaIV	GGNNCC	1 cut(s)	1017
NmeAIII	GCCGAG	1 cut(s)	793
NmuCI	GTSAC	2 cut(s)	304, 622
PagI	TCATGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	83, 793
PfoI	TCCNGGA	1 cut(s)	830
PkrI	GCNGC	7 cut(s)	12, 65, 68, 71, 74, 77, 500
PleI	GAGTC	1 cut(s)	888
PpsI	GAGTC	1 cut(s)	888
Ppu21I	YACGTR	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	28
Psp6I	CCWGG	4 cut(s)	253, 570, 595, 830
PspEI	GGTNACC	1 cut(s)	1136
PspFI	CCCAGC	1 cut(s)	1045
PspGI	CCWGG	4 cut(s)	253, 570, 595, 830
PspN4I	GGNNCC	1 cut(s)	1017
PstI	CTGCAG	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	636
RsaI	GTAC	3 cut(s)	346, 583, 1017
RsaNI	GTAC	3 cut(s)	345, 582, 1016
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	695, 963
SatI	GCNGC	7 cut(s)	11, 64, 67, 70, 73, 76, 499
Sau3AI	GATC	8 cut(s)	4, 250, 319, 363, 483, 538, 636, 1033
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	5 cut(s)	51, 255, 572, 597, 832
SduI	GDGCHC	2 cut(s)	28, 232
SfaNI	GCATC	2 cut(s)	43, 880
SfcI	CTRYAG	2 cut(s)	496, 702
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	3 cut(s)	266, 956, 962
SmoI	CTYRAG	3 cut(s)	266, 956, 962
SnaBI	TACGTA	1 cut(s)	401
Sse9I	AATT	5 cut(s)	430, 471, 505, 606, 696
SsiI	CCGC	9 cut(s)	63, 66, 69, 72, 75, 78, 90, 342, 1118
SspMI	CTAG	1 cut(s)	1031
SstI	GAGCTC	1 cut(s)	28
StyD4I	CCNGG	5 cut(s)	49, 253, 570, 595, 830
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	4 cut(s)	288, 581, 827, 951
TaiI	ACGT	3 cut(s)	403, 786, 1103
TaqI	TCGA	3 cut(s)	503, 603, 849
TasI	AATT	5 cut(s)	430, 471, 505, 606, 696
TauI	GCSGC	5 cut(s)	66, 69, 72, 75, 78
TfiI	GAWTC	2 cut(s)	83, 793
Tru1I	TTAA	2 cut(s)	695, 963
Tru9I	TTAA	2 cut(s)	695, 963
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	2 cut(s)	304, 622
TseI	GCWGC	2 cut(s)	10, 498
Tsp45I	GTSAC	2 cut(s)	304, 622
TspDTI	ATGAA	4 cut(s)	251, 306, 464, 572
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	1 cut(s)	766
Vha464I	CTTAAG	1 cut(s)	962
XapI	RAATTY	2 cut(s)	471, 505
XbaI	TCTAGA	1 cut(s)	1030
XcmI	CCANNNNNNNNNTGG	3 cut(s)	130, 748, 1100
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.