FvH4_4g30104

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007435
Physical Location & Seq
Reverse (-)
29911994 .. 29915708
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30104.t1

Sequence Viewer

Length: 1161 bp
ATGGATCAGCAGCAGCAGCAGAGAGTAGGAGCTCCTCAGTTTCGTCCTCCGCCTCCGGGCCAAGGCGGTGGCGGCGGCGGTGAATCCTCCTCCATTCTCTTCGTCCTCGTCGGTTTCCTCGCCATCTTCTCTATGCTAGTGCTGCCATCCGTATCAACCATTAGCAATAGCTTTTCAATTTTGCACCAAGTCCCGGAAGGTCATGTTGGGGTTTATTGGAGGGGAGGTGCTCTTTTGAAGACTATTACAGATCCAGGGTTTCATCTCAAGTTGCCTCTGATAACCCAGTATGAACCTGTTCAAGTCACCCTTCAGACCGATCAAGTGAAGGACATTCCTTGTGGTACAAAAGGGGGTGTCATGATCAACTTTGAGAAGATTGAGGTTGTAAACAGGCTGCGTAAGGAATATGTGTATGAGACACTTCTCAATTATGGTGTACACTATGACAATACATGGATCTACGACAAAATTCATCATGAGATCAATCAGTTCTGCAGCTCGAATTCTCTTCAAGATGTCTATATTGATGTGTTTGATCAGATTGATGAGAAGATGAAAGACGCTCTTCAGGTTGACTGTACCAAATATGCCCCAGGTATCGAAATCATCAACGTGCGTGTCACAAAGCCGAAGATCCCTGATAGTATCAGACGAAACTTTGAGCAGATGGAGGAAGAGCGGACCAAGGTCTTAATTGCTATAGAGCGACAGAGAGTGGTGGAGAAAGAAGCAGAAACCCGGAAGAAGATGGCTATCAGTGAGGCTGAGAAGAATGCTAATGTCAGTAAGATTCTCATGGAACAGAAGTTGATGGAGAAAGATAGTTCCAGGAGGCAGGAAGAAATCGAAAATGCCATGTATCTAGCTCGGGAGAAGAGTCTTGCAGATGCTGATTTCTACAAAGTTATGAGAGAAGCTGAAGCAAACAAGTTGAAGCTCACTCCACAGTTCCTTGAGCTTAAGTTTATCGAGGCCATTGCTGATAATACAAAAATCTTCTTTGGGGACAAGGTTCCCAATATGGTTCTAGATCAGAGGTTGCTGGGGAACTTCTTGAAGGTTTCCAGAGAGGTGGCCAAAGATGTATCCAAAAAAACGATCGAGGAAGCTAATGCAGACAATGGAGAAAGTGGTAACCCTGAAGTTGAATATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

387

Amino Acids

43.82

Weight (kDa)

5.51

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 63 - 244 5.4e-29 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 682
AciI CCGC 6 cut(s) 50, 66, 72, 75, 78, 682
AclWI GGATC 4 cut(s) 12, 245, 467, 631
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 2 cut(s) 471, 505
AcuI CTGAAG 3 cut(s) 296, 554, 942
AfaI GTAC 3 cut(s) 346, 441, 583
AfiI CCNNNNNNNGG 3 cut(s) 56, 62, 193
AflII CTTAAG 1 cut(s) 962
AgsI TTSAA 7 cut(s) 177, 238, 302, 515, 937, 1060, 1151
AjnI CCWGG 3 cut(s) 253, 595, 830
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 8 cut(s) 32, 171, 501, 869, 920, 940, 961, 1112
AluI AGCT 8 cut(s) 32, 171, 501, 869, 920, 940, 961, 1112
Alw21I GWGCWC 2 cut(s) 34, 232
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 12, 245, 467, 631
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 3 cut(s) 58, 975, 1077
ApeKI GCWGC 6 cut(s) 10, 13, 16, 142, 397, 498
ApoI RAATTY 2 cut(s) 471, 505
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 58, 684
AsuC2I CCSGG 3 cut(s) 57, 194, 742
AsuHPI GGTGA 2 cut(s) 92, 298
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 1 cut(s) 684
BalI TGGCCA 1 cut(s) 1079
BanII GRGCYC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 34, 232
BbvI GCAGC 6 cut(s) 22, 25, 28, 129, 384, 510
BccI CCATC 5 cut(s) 131, 154, 664, 745, 808
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 3 cut(s) 255, 597, 832
BciVI GTATCC 1 cut(s) 1099
BclI TGATCA 2 cut(s) 363, 538
BcnI CCSGG 3 cut(s) 57, 194, 742
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 4 cut(s) 137, 866, 1031, 1159
BfmI CTRYAG 2 cut(s) 496, 702
BfrI CTTAAG 1 cut(s) 962
BfuI GTATCC 1 cut(s) 1099
BisI GCNGC 8 cut(s) 11, 14, 17, 73, 76, 143, 398, 499
BlsI GCNGC 8 cut(s) 12, 15, 18, 74, 77, 144, 399, 500
Bme1390I CCNGG 6 cut(s) 57, 194, 255, 597, 742, 832
Bme18I GGWCC 1 cut(s) 684
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 2 cut(s) 58, 684
BmiI GGNNCC 1 cut(s) 1017
BmrFI CCNGG 6 cut(s) 57, 194, 255, 597, 742, 832
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 880
BmuI ACTGGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 689
BpiI GAAGAC 1 cut(s) 245
BpuEI CTTGAG 2 cut(s) 251, 977
BpuMI CCSGG 3 cut(s) 57, 194, 742
BsaBI GATNNNNATC 1 cut(s) 755
BsaJI CCNNGG 4 cut(s) 61, 254, 595, 687
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 62, 193
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 978
Bse8I GATNNNNATC 1 cut(s) 755
BseBI CCWGG 3 cut(s) 255, 597, 832
BseDI CCNNGG 4 cut(s) 61, 254, 595, 687
BseGI GGATG 1 cut(s) 146
BseJI GATNNNNATC 1 cut(s) 755
BseLI CCNNNNNNNGG 3 cut(s) 56, 62, 193
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 2 cut(s) 50, 759
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 24, 79
BseXI GCAGC 6 cut(s) 22, 25, 28, 129, 384, 510
BseYI CCCAGC 1 cut(s) 1045
Bsh1285I CGRYCG 1 cut(s) 1104
BshFI GGCC 3 cut(s) 60, 977, 1079
BsiEI CGRYCG 1 cut(s) 1104
BsiHKAI GWGCWC 2 cut(s) 34, 232
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 3 cut(s) 56, 194, 742
BslFI GGGAC 2 cut(s) 176, 1022
BslI CCNNNNNNNGG 3 cut(s) 56, 62, 193
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 176, 1022
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 3 cut(s) 60, 977, 1079
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 2 cut(s) 34, 232
Bsp1407I TGTACA 1 cut(s) 439
BspACI CCGC 6 cut(s) 50, 66, 72, 75, 78, 682
BspANI GGCC 3 cut(s) 60, 977, 1079
BspCNI CTCAG 2 cut(s) 49, 760
BspHI TCATGA 2 cut(s) 360, 478
BspLI GGNNCC 1 cut(s) 1017
BspMAI CTGCAG 1 cut(s) 500
BspPI GGATC 4 cut(s) 12, 245, 467, 631
BspQI GCTCTTC 2 cut(s) 573, 672
BspTI CTTAAG 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 682
BsrDI GCAATG 1 cut(s) 978
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 4 cut(s) 61, 254, 595, 687
BssT1I CCWWGG 2 cut(s) 61, 687
Bst2UI CCWGG 3 cut(s) 255, 597, 832
Bst4CI ACNGT 2 cut(s) 581, 951
Bst6I CTCTTC 5 cut(s) 104, 516, 573, 672, 872
BstAFI CTTAAG 1 cut(s) 962
BstAUI TGTACA 1 cut(s) 439
BstDEI CTNAG 2 cut(s) 36, 768
BstEII GGTNACC 1 cut(s) 1136
BstF5I GGATG 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 413
BstMCI CGRYCG 1 cut(s) 1104
BstMWI GCNNNNNNNGC 3 cut(s) 16, 72, 142
BstNI CCWGG 3 cut(s) 255, 597, 832
BstPAI GACNNNNGTC 1 cut(s) 689
BstPI GGTNACC 1 cut(s) 1136
BstSCI CCNGG 6 cut(s) 55, 192, 253, 595, 740, 830
BstSFI CTRYAG 2 cut(s) 496, 702
BstV1I GCAGC 6 cut(s) 22, 25, 28, 129, 384, 510
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 3 cut(s) 250, 459, 636
BstXI CCANNNNNNTGG 2 cut(s) 68, 1075
BstYI RGATCY 3 cut(s) 250, 459, 636
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 3 cut(s) 60, 977, 1079
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 766
CaiI CAGNNNCTG 1 cut(s) 893
CciI TCATGA 2 cut(s) 360, 478
Cfr13I GGNCC 2 cut(s) 58, 684
CseI GACGC 1 cut(s) 572
Csp6I GTAC 3 cut(s) 345, 440, 582
CviAII CATG 6 cut(s) 203, 361, 456, 479, 799, 859
CviQI GTAC 3 cut(s) 345, 440, 582
DdeI CTNAG 2 cut(s) 36, 768
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 5 cut(s) 104, 516, 573, 672, 872
EarI CTCTTC 5 cut(s) 104, 516, 573, 672, 872
EciI GGCGGA 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 61, 687
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 684
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 3 cut(s) 296, 554, 942
Eco88I CYCGRG 1 cut(s) 870
Eco91I GGTNACC 1 cut(s) 1136
EcoICRI GAGCTC 1 cut(s) 32
EcoO65I GGTNACC 1 cut(s) 1136
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 3 cut(s) 253, 595, 830
EcoT14I CCWWGG 2 cut(s) 61, 687
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 2 cut(s) 61, 687
FaeI CATG 6 cut(s) 206, 364, 459, 482, 802, 862
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 552, 584
FaqI GGGAC 2 cut(s) 176, 1022
FatI CATG 6 cut(s) 202, 360, 455, 478, 798, 858
FbaI TGATCA 2 cut(s) 363, 538
Fnu4HI GCNGC 8 cut(s) 11, 14, 17, 73, 76, 143, 398, 499
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 8 cut(s) 11, 14, 17, 73, 76, 143, 398, 499
FspBI CTAG 4 cut(s) 137, 866, 1031, 1159
GluI GCNGC 8 cut(s) 11, 14, 17, 73, 76, 143, 398, 499
GsaI CCCAGC 1 cut(s) 1049
HaeIII GGCC 3 cut(s) 60, 977, 1079
HapII CCGG 3 cut(s) 56, 194, 742
HgaI GACGC 1 cut(s) 572
Hin1II CATG 6 cut(s) 206, 364, 459, 482, 802, 862
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 3 cut(s) 83, 793, 880
HpaII CCGG 3 cut(s) 56, 194, 742
HphI GGTGA 2 cut(s) 92, 298
Hpy166II GTNNAC 4 cut(s) 391, 440, 442, 577
Hpy188I TCNGA 5 cut(s) 279, 315, 543, 653, 1038
Hpy188III TCNNGA 7 cut(s) 361, 479, 515, 872, 1031, 1057, 1068
Hpy8I GTNNAC 4 cut(s) 391, 440, 442, 577
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 4 cut(s) 191, 320, 322, 1054
HpyCH4III ACNGT 2 cut(s) 581, 951
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 4 cut(s) 184, 498, 887, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 72, 142
HpyF3I CTNAG 2 cut(s) 36, 768
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 6 cut(s) 206, 364, 459, 482, 802, 862
Ksp22I TGATCA 2 cut(s) 363, 538
LguI GCTCTTC 2 cut(s) 573, 672
LmnI GCTCC 2 cut(s) 29, 37
Lsp1109I GCAGC 6 cut(s) 22, 25, 28, 129, 384, 510
LweI GCATC 1 cut(s) 880
MaeI CTAG 4 cut(s) 137, 866, 1031, 1159
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 3 cut(s) 304, 622, 1136
MbiI CCGCTC 1 cut(s) 682
MflI RGATCY 3 cut(s) 250, 459, 636
MhlI GDGCHC 2 cut(s) 34, 232
MlsI TGGCCA 1 cut(s) 1079
MluCI AATT 5 cut(s) 177, 430, 471, 505, 696
MluNI TGGCCA 1 cut(s) 1079
MlyI GAGTC 1 cut(s) 889
Mox20I TGGCCA 1 cut(s) 1079
MroXI GAANNNNTTC 1 cut(s) 297
MscI TGGCCA 1 cut(s) 1079
MseI TTAA 2 cut(s) 695, 963
MslI CAYNNNNRTG 1 cut(s) 614
Msp20I TGGCCA 1 cut(s) 1079
MspCI CTTAAG 1 cut(s) 962
MspI CCGG 3 cut(s) 56, 194, 742
MspR9I CCNGG 6 cut(s) 57, 194, 255, 597, 742, 832
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 3 cut(s) 255, 597, 832
MwoI GCNNNNNNNGC 3 cut(s) 16, 72, 142
NciI CCSGG 3 cut(s) 57, 194, 742
NlaIII CATG 6 cut(s) 206, 364, 459, 482, 802, 862
NlaIV GGNNCC 1 cut(s) 1017
NmuCI GTSAC 2 cut(s) 304, 622
PagI TCATGA 2 cut(s) 360, 478
PciSI GCTCTTC 2 cut(s) 573, 672
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 83, 793
PfoI TCCNGGA 2 cut(s) 192, 830
PkrI GCNGC 8 cut(s) 12, 15, 18, 74, 77, 144, 399, 500
Ple19I CGATCG 1 cut(s) 1104
PleI GAGTC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 888
PshAI GACNNNNGTC 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 34
Psp6I CCWGG 3 cut(s) 253, 595, 830
PspEI GGTNACC 1 cut(s) 1136
PspFI CCCAGC 1 cut(s) 1045
PspGI CCWGG 3 cut(s) 253, 595, 830
PspN4I GGNNCC 1 cut(s) 1017
PspPI GGNCC 2 cut(s) 58, 684
PstI CTGCAG 1 cut(s) 500
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 3 cut(s) 250, 459, 636
PvuI CGATCG 1 cut(s) 1104
RsaI GTAC 3 cut(s) 346, 441, 583
RsaNI GTAC 3 cut(s) 345, 440, 582
RseI CAYNNNNRTG 1 cut(s) 614
SacI GAGCTC 1 cut(s) 34
SapI GCTCTTC 2 cut(s) 573, 672
SaqAI TTAA 2 cut(s) 695, 963
SatI GCNGC 8 cut(s) 11, 14, 17, 73, 76, 143, 398, 499
Sau96I GGNCC 2 cut(s) 58, 684
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 6 cut(s) 57, 194, 255, 597, 742, 832
SduI GDGCHC 2 cut(s) 34, 232
SfaNI GCATC 1 cut(s) 880
SfcI CTRYAG 2 cut(s) 496, 702
SinI GGWCC 1 cut(s) 684
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 3 cut(s) 266, 956, 962
SmoI CTYRAG 3 cut(s) 266, 956, 962
Sse9I AATT 5 cut(s) 177, 430, 471, 505, 696
SsiI CCGC 6 cut(s) 50, 66, 72, 75, 78, 682
SspMI CTAG 4 cut(s) 137, 866, 1031, 1159
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 6 cut(s) 55, 192, 253, 595, 740, 830
StyI CCWWGG 2 cut(s) 61, 687
TaaI ACNGT 2 cut(s) 581, 951
TaiI ACGT 1 cut(s) 618
TaqI TCGA 5 cut(s) 503, 603, 849, 972, 1104
TaqII GACCGA 1 cut(s) 332
TasI AATT 5 cut(s) 177, 430, 471, 505, 696
TatI WGTACW 1 cut(s) 439
TauI GCSGC 2 cut(s) 75, 78
TfiI GAWTC 2 cut(s) 83, 793
Tru1I TTAA 2 cut(s) 695, 963
Tru9I TTAA 2 cut(s) 695, 963
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 2 cut(s) 304, 622
TseI GCWGC 6 cut(s) 10, 13, 16, 142, 397, 498
Tsp45I GTSAC 2 cut(s) 304, 622
TspDTI ATGAA 4 cut(s) 251, 306, 464, 572
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 766
Vha464I CTTAAG 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 684
XapI RAATTY 2 cut(s) 471, 505
XbaI TCTAGA 1 cut(s) 1030
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 4 cut(s) 137, 866, 1031, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.