Rw0G006540

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00245
OG0007435
Physical Location & Seq
Reverse (-)
206573 .. 209756
3184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006540.1

Sequence Viewer

Length: 1158 bp
ATGGATCAGCAGCAGAGAGCAGGAGCTCCTCAGCATCGTCCTCCTCCGCCTCCCGGTCAAGGCGGCGGCGGCGGCGGAGAATCCTCCGCCATTCTTGTCGTCCTCGTCGGTTTCCTCGCCATCTTCGCTATGGTGGTGCTTCCATCAATATCAACTATTAGCAATAGCTTTTCCATCCTGCACCAAGTCCCTGAAGGTCATGTTGGTGTATATTGGAGAGGGGGTGCTCTTCTAAAGACTATTACTGATCCAGGGTTTCATCTCAAGTTGCCTCTGATAACACAGTATGAACCTGTTCAAGTGACCCTTCAGACTGATCAAGTGAGGGATATTCCTTGCGGTACAAAAGGGGGTGTCATGATCACCTTTGAAAAGATTGAGGTTGTAAACAGGCTACGTAAGGAATATGTGTATGAGACACTTCTAAATTATGGTGTGCACTATGACAACACATGGATATATGACAAAATTCATCACGAGATCAATCAGTTCTGCAGCTCGAATTCTCTCCAAGATGTCTATATTGATGTGTTTGATCAGATTGATGAGAAGATGAAAGACGCTCTCCAGGTTGACTGTACCAAATATGCCCCAGGTATCGAAATTATCAATGTGCGTGTCACAAAGCCGAAGATCCCTGATAGTATCAGACGGAACTTTGAGCAGATGGAGGAGGAGCGCACCAAGGTCTTAATTGCTATAGAGAGACAGAGGGTGGTGGAGAAAGAAGCAGAAACCAAGAAAAAGATGGCTATCAGTGAAGCCGAGAAGAATGCCAACGTCAGTAAGATTCTCATGGAACAAAAGCTGATGGAGAAGGACAGTTCCAGGAGGCAGGAAGAAATCGAAAATGCCATGTATCTTGCTCGGGAGAAGAGTCTTGCAGATGCTGATTTCTACAAAGTAATGAGAGAGGCCGAAGCAAACAAGTTGAAGCTCACTCCACAGTTCCTTGAGCTTAAGTTTATCGAGGCCATCGCTGATAATACAAAAATCTTCTTTGGGGACAAGGTACCCAATATGGTTCTAGATCAGAGGTTGCTGGGGAACTTTTTGAAGGTTTCCAGAGAGGTGGCCAAAGATATATCCCACAAAACGTCTGGGGATGCTAATGCGGATGATGGAGAAGCTGGTAACCCTGAAGTTGAATATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

385

Amino Acids

43.43

Weight (kDa)

5.55

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 62 - 243 1.5e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1012
AccB1I GGYRCC 1 cut(s) 1012
AciI CCGC 9 cut(s) 47, 63, 66, 69, 72, 75, 87, 339, 1115
AclWI GGATC 3 cut(s) 12, 242, 628
AcoI YGGCCR 1 cut(s) 1074
AcsI RAATTY 2 cut(s) 468, 502
AcuI CTGAAG 2 cut(s) 213, 293
AfaI GTAC 3 cut(s) 343, 580, 1014
AfiI CCNNNNNNNGG 2 cut(s) 53, 59
AflII CTTAAG 1 cut(s) 959
AgsI TTSAA 5 cut(s) 299, 371, 934, 1057, 1148
AjnI CCWGG 4 cut(s) 250, 567, 592, 827
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 7 cut(s) 26, 168, 498, 808, 937, 958, 1130
AluI AGCT 7 cut(s) 26, 168, 498, 808, 937, 958, 1130
Alw21I GWGCWC 3 cut(s) 28, 229, 441
Alw26I GTCTC 2 cut(s) 410, 700
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 3 cut(s) 12, 242, 628
AlwNI CAGNNNCTG 1 cut(s) 890
Ama87I CYCGRG 1 cut(s) 867
AoxI GGCC 3 cut(s) 915, 972, 1074
ApaLI GTGCAC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 10, 495
ApoI RAATTY 2 cut(s) 468, 502
Asp700I GAANNNNTTC 1 cut(s) 294
Asp718I GGTACC 1 cut(s) 1012
AspLEI GCGC 1 cut(s) 681
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 867
BaeGI GKGCMC 1 cut(s) 441
BalI TGGCCA 1 cut(s) 1076
BanI GGYRCC 1 cut(s) 1012
BanII GRGCYC 1 cut(s) 28
BauI CACGAG 1 cut(s) 476
Bbv12I GWGCWC 3 cut(s) 28, 229, 441
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 22, 507
BccI CCATC 8 cut(s) 128, 151, 182, 661, 742, 805, 983, 1115
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 4 cut(s) 252, 569, 594, 829
BclI TGATCA 3 cut(s) 316, 360, 535
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 410, 700
BfaI CTAG 1 cut(s) 1028
BfmI CTRYAG 2 cut(s) 493, 699
BfrI CTTAAG 1 cut(s) 959
BisI GCNGC 6 cut(s) 11, 64, 67, 70, 73, 496
BlsI GCNGC 6 cut(s) 12, 65, 68, 71, 74, 497
Bme1390I CCNGG 5 cut(s) 54, 252, 569, 594, 829
BmeT110I CYCGRG 1 cut(s) 867
BmiI GGNNCC 1 cut(s) 1014
BmrFI CCNGG 5 cut(s) 54, 252, 569, 594, 829
BmsI GCATC 3 cut(s) 43, 877, 1096
BpmI CTGGAG 1 cut(s) 551
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 248, 974
BpuMI CCSGG 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 251, 592, 684
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 59
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 4 cut(s) 252, 569, 594, 829
BseDI CCNNGG 3 cut(s) 251, 592, 684
BseGI GGATG 3 cut(s) 174, 1111, 1123
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 2 cut(s) 53, 59
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 4 cut(s) 18, 33, 686, 689
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 2 cut(s) 22, 507
BseYI CCCAGC 1 cut(s) 1042
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 3 cut(s) 917, 974, 1076
BshNI GGYRCC 1 cut(s) 1012
BsiHKAI GWGCWC 3 cut(s) 28, 229, 441
BsiHKCI CYCGRG 1 cut(s) 867
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 2 cut(s) 173, 1019
BslI CCNNNNNNNGG 2 cut(s) 53, 59
BsmAI GTCTC 2 cut(s) 410, 700
BsmFI GGGAC 2 cut(s) 173, 1019
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 3 cut(s) 917, 974, 1076
BsoBI CYCGRG 1 cut(s) 867
Bsp1286I GDGCHC 3 cut(s) 28, 229, 441
Bsp143I GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
BspACI CCGC 9 cut(s) 47, 63, 66, 69, 72, 75, 87, 339, 1115
BspANI GGCC 3 cut(s) 917, 974, 1076
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 1014
BspMAI CTGCAG 1 cut(s) 497
BspPI GGATC 3 cut(s) 12, 242, 628
BspQI GCTCTTC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 1012
BspTI CTTAAG 1 cut(s) 959
BssECI CCNNGG 3 cut(s) 251, 592, 684
BssMI GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
BssSI CACGAG 1 cut(s) 476
BssT1I CCWWGG 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 476
Bst2UI CCWGG 4 cut(s) 252, 569, 594, 829
Bst4CI ACNGT 4 cut(s) 285, 578, 824, 948
Bst6I CTCTTC 2 cut(s) 234, 869
BstAFI CTTAAG 1 cut(s) 959
BstBAI YACGTR 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 1133
BstF5I GGATG 3 cut(s) 174, 1111, 1123
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 8 cut(s) 7, 250, 319, 363, 483, 538, 636, 1033
BstMAI GTCTC 2 cut(s) 410, 700
BstMBI GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 69, 72, 125
BstNI CCWGG 4 cut(s) 252, 569, 594, 829
BstPI GGTNACC 1 cut(s) 1133
BstSCI CCNGG 5 cut(s) 52, 250, 567, 592, 827
BstSFI CTRYAG 2 cut(s) 493, 699
BstSLI GKGCMC 1 cut(s) 441
BstSNI TACGTA 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 22, 507
BstX2I RGATCY 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 633
BsuRI GGCC 3 cut(s) 917, 974, 1076
BtgZI GCGATG 1 cut(s) 961
BtsCI GGATG 3 cut(s) 174, 1111, 1123
BtsIMutI CAGTG 1 cut(s) 763
CaiI CAGNNNCTG 1 cut(s) 890
CciI TCATGA 1 cut(s) 357
CfoI GCGC 1 cut(s) 681
CseI GACGC 1 cut(s) 569
Csp6I GTAC 3 cut(s) 342, 579, 1013
CviAII CATG 5 cut(s) 200, 358, 453, 796, 856
CviQI GTAC 3 cut(s) 342, 579, 1013
DdeI CTNAG 1 cut(s) 30
DpnI GATC 8 cut(s) 6, 249, 318, 362, 482, 537, 635, 1032
DpnII GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
EaeI YGGCCR 1 cut(s) 1074
Eam1104I CTCTTC 2 cut(s) 234, 869
EarI CTCTTC 2 cut(s) 234, 869
EciI GGCGGA 3 cut(s) 36, 76, 90
Ecl136II GAGCTC 1 cut(s) 26
Eco105I TACGTA 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 213, 293
Eco88I CYCGRG 1 cut(s) 867
Eco91I GGTNACC 1 cut(s) 1133
EcoICRI GAGCTC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 1133
EcoRI GAATTC 1 cut(s) 502
EcoRII CCWGG 4 cut(s) 250, 567, 592, 827
EcoT14I CCWWGG 1 cut(s) 684
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 5 cut(s) 203, 361, 456, 799, 859
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 2 cut(s) 173, 1019
FatI CATG 5 cut(s) 199, 357, 452, 795, 855
FbaI TGATCA 3 cut(s) 316, 360, 535
Fnu4HI GCNGC 6 cut(s) 11, 64, 67, 70, 73, 496
FokI GGATG 3 cut(s) 161, 1118, 1130
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 6 cut(s) 11, 64, 67, 70, 73, 496
FspBI CTAG 1 cut(s) 1028
GlaI GCGC 1 cut(s) 680
GluI GCNGC 6 cut(s) 11, 64, 67, 70, 73, 496
GsaI CCCAGC 1 cut(s) 1046
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 3 cut(s) 917, 974, 1076
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 569
HhaI GCGC 1 cut(s) 681
Hin1II CATG 5 cut(s) 203, 361, 456, 799, 859
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 3 cut(s) 80, 790, 877
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 388, 439, 574
Hpy188I TCNGA 5 cut(s) 276, 312, 540, 650, 1035
Hpy188III TCNNGA 5 cut(s) 358, 476, 869, 1028, 1065
Hpy8I GTNNAC 3 cut(s) 388, 439, 574
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 188, 317, 811, 1051
HpyCH4III ACNGT 4 cut(s) 285, 578, 824, 948
HpyCH4IV ACGT 3 cut(s) 397, 780, 1097
HpyCH4V TGCA 4 cut(s) 181, 439, 495, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 72, 125
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 3 cut(s) 397, 780, 1097
Hsp92II CATG 5 cut(s) 203, 361, 456, 799, 859
HspAI GCGC 1 cut(s) 679
KpnI GGTACC 1 cut(s) 1016
Ksp22I TGATCA 3 cut(s) 316, 360, 535
Kzo9I GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 3 cut(s) 23, 31, 676
Lsp1109I GCAGC 2 cut(s) 22, 507
LweI GCATC 3 cut(s) 43, 877, 1096
MaeI CTAG 1 cut(s) 1028
MaeII ACGT 3 cut(s) 397, 780, 1097
MaeIII GTNAC 3 cut(s) 301, 619, 1133
MalI GATC 8 cut(s) 6, 249, 318, 362, 482, 537, 635, 1032
MboI GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
MboII GAAGA 8 cut(s) 115, 221, 562, 643, 781, 851, 886, 988
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 3 cut(s) 28, 229, 441
MlsI TGGCCA 1 cut(s) 1076
MluCI AATT 5 cut(s) 427, 468, 502, 603, 693
MluNI TGGCCA 1 cut(s) 1076
MlyI GAGTC 1 cut(s) 886
Mox20I TGGCCA 1 cut(s) 1076
MroXI GAANNNNTTC 1 cut(s) 294
MscI TGGCCA 1 cut(s) 1076
MseI TTAA 2 cut(s) 692, 960
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 1076
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 5 cut(s) 54, 252, 569, 594, 829
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 4 cut(s) 252, 569, 594, 829
MwoI GCNNNNNNNGC 3 cut(s) 69, 72, 125
NciI CCSGG 1 cut(s) 54
NdeII GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
NlaIII CATG 5 cut(s) 203, 361, 456, 799, 859
NlaIV GGNNCC 1 cut(s) 1014
NmeAIII GCCGAG 1 cut(s) 790
NmuCI GTSAC 2 cut(s) 301, 619
PagI TCATGA 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 234
PctI GAATGC 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 80, 790
PfoI TCCNGGA 1 cut(s) 827
PkrI GCNGC 6 cut(s) 12, 65, 68, 71, 74, 497
PleI GAGTC 1 cut(s) 885
PpsI GAGTC 1 cut(s) 885
Ppu21I YACGTR 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 28
Psp6I CCWGG 4 cut(s) 250, 567, 592, 827
PspEI GGTNACC 1 cut(s) 1133
PspFI CCCAGC 1 cut(s) 1042
PspGI CCWGG 4 cut(s) 250, 567, 592, 827
PspN4I GGNNCC 1 cut(s) 1014
PstI CTGCAG 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 1 cut(s) 633
RsaI GTAC 3 cut(s) 343, 580, 1014
RsaNI GTAC 3 cut(s) 342, 579, 1013
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 692, 960
SatI GCNGC 6 cut(s) 11, 64, 67, 70, 73, 496
Sau3AI GATC 8 cut(s) 4, 247, 316, 360, 480, 535, 633, 1030
SchI GAGTC 1 cut(s) 886
ScrFI CCNGG 5 cut(s) 54, 252, 569, 594, 829
SduI GDGCHC 3 cut(s) 28, 229, 441
SfaNI GCATC 3 cut(s) 43, 877, 1096
SfcI CTRYAG 2 cut(s) 493, 699
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 263, 953, 959
SmoI CTYRAG 3 cut(s) 263, 953, 959
SnaBI TACGTA 1 cut(s) 398
Sse9I AATT 5 cut(s) 427, 468, 502, 603, 693
SsiI CCGC 9 cut(s) 47, 63, 66, 69, 72, 75, 87, 339, 1115
SspMI CTAG 1 cut(s) 1028
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 5 cut(s) 52, 250, 567, 592, 827
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 4 cut(s) 285, 578, 824, 948
TaiI ACGT 3 cut(s) 400, 783, 1100
TaqI TCGA 4 cut(s) 500, 600, 846, 969
TasI AATT 5 cut(s) 427, 468, 502, 603, 693
TauI GCSGC 4 cut(s) 66, 69, 72, 75
TfiI GAWTC 2 cut(s) 80, 790
Tru1I TTAA 2 cut(s) 692, 960
Tru9I TTAA 2 cut(s) 692, 960
TscAI CASTG 1 cut(s) 763
TseFI GTSAC 2 cut(s) 301, 619
TseI GCWGC 2 cut(s) 10, 495
Tsp45I GTSAC 2 cut(s) 301, 619
TspDTI ATGAA 4 cut(s) 248, 303, 461, 569
TspGWI ACGGA 1 cut(s) 667
TspRI CASTG 1 cut(s) 763
Vha464I CTTAAG 1 cut(s) 959
VneI GTGCAC 1 cut(s) 437
XapI RAATTY 2 cut(s) 468, 502
XbaI TCTAGA 1 cut(s) 1027
XcmI CCANNNNNNNNNTGG 3 cut(s) 127, 745, 1097
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.