RchiOBHm_Chr4g0438461

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007435
Physical Location & Seq
Reverse (-)
61154665 .. 61157900
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40659

Sequence Viewer

Length: 1077 bp
ATGTACTCACAGCAGCAGAGACAAACAGCTCCACAGCCTCGCCCTCGGCCTCAGAATCAAGACGGCGGCGATTTCTCGGCCGTTTGCTTCGTTCTCTTCCTGTTCCTTGCCGTCGCCATTTTCACTTTGGTAATCAGCGGTCTGCACCAAGTTCCGGAAGGTCATGCTGGGGTGTATTGGAGAGGAGGTGCTCTTCTGAAGACTGTTACAGATCCAGGGTTTCATCTCATGCTTCCCCTGATAACCGACTTTGAGCCTGTTCAAGTCACCCTTCAGACTGATCAGGTGAAGGATATTCCATGTGGTACAAAGGGGGGTGTCGTGATTAACTTTGAGAAGATTGAGGTTGTTAACCGGCTTCGCAAGGAATTTGTATATGAGACACTTCTCAATTATGGTGTGAAGTATGACCGTACATGGATATATGACAAAATTCATCATGAGATCAATCAGTTCTGCAGCTCACATTCACTTCAAGATGTCTACATTGATGTGTTCGATCAGATTGATGAAAAGATGAAAGAAGCTCTTCAGGGTGATTGCACACGTTATGCTCCAGGTATTGAAATTTTCAGTGTCCGTGTCACAAAGCCAACTATCCCAGATAGTGTAAGACATAACTTTGAGCAGATGGAGGAGCAACGTACCAAGGTCCTAATTGCTATTGAGAGACAGAGAGTGGTGGAGAAAGAGGCAGAAACCAAGAAGAAGATGGCTATAAGTGAAGCCGAGAAGAATTCCAACGTGAGTAAGATTCTCATGGAGCAAAAGTTGATGGAGAAGGACAGTTCCAGGAGGCAGCAAGAAATTGAAAATGACATGTATCTTGCTCGGGAAAAGAGTGTAGCAGATGCTGATTTCTACAAAGTCATGAAAGAGGCTGAAGCAAACAGACTGAAGCTTACTCCGCAGTTCCTTGAGCTCAAATTCATCGAGGCTATTGCTGACAATACGAAAGTTTTCTTTGGGGACAAGGTACCAAATATGGTTTTGGATCAGAGGTTGCTGGGGAACTTCTTAAAGGTTTCCAGAGAGTTGTCGGGAGATGTGGCCAGGGGAGGAAGTGCAGCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

358

Amino Acids

40.99

Weight (kDa)

6.06

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 50 - 229 2e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 976
AccB1I GGYRCC 1 cut(s) 976
AccI GTMKAC 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 3 cut(s) 66, 138, 908
AclWI GGATC 2 cut(s) 206, 1002
AcoI YGGCCR 2 cut(s) 78, 1050
AcsI RAATTY 5 cut(s) 368, 432, 567, 736, 926
AcuI CTGAAG 5 cut(s) 218, 257, 515, 903, 917
AfaI GTAC 5 cut(s) 5, 307, 415, 646, 978
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 2 cut(s) 545, 819
AgsI TTSAA 4 cut(s) 263, 476, 566, 812
AjnI CCWGG 4 cut(s) 214, 556, 791, 1052
AluBI AGCT 5 cut(s) 29, 462, 527, 901, 922
AluI AGCT 5 cut(s) 29, 462, 527, 901, 922
Alw21I GWGCWC 2 cut(s) 193, 924
Alw26I GTCTC 3 cut(s) 13, 374, 664
AlwI GGATC 2 cut(s) 206, 1002
AlwNI CAGNNNCTG 1 cut(s) 854
Ama87I CYCGRG 1 cut(s) 831
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 3 cut(s) 47, 78, 1050
ApeKI GCWGC 4 cut(s) 13, 459, 799, 1067
ApoI RAATTY 5 cut(s) 368, 432, 567, 736, 926
Asp700I GAANNNNTTC 2 cut(s) 528, 959
Asp718I GGTACC 1 cut(s) 976
AspS9I GGNCC 1 cut(s) 652
AsuHPI GGTGA 3 cut(s) 259, 298, 548
AvaI CYCGRG 1 cut(s) 831
AvaII GGWCC 1 cut(s) 652
BalI TGGCCA 1 cut(s) 1052
BanI GGYRCC 1 cut(s) 976
BanII GRGCYC 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 193, 924
BbvI GCAGC 3 cut(s) 25, 471, 811
BccI CCATC 3 cut(s) 625, 706, 769
BceAI ACGGC 3 cut(s) 65, 79, 95
BcgI CGANNNNNNTGC 2 cut(s) 923, 957
BciT130I CCWGG 4 cut(s) 216, 558, 793, 1054
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 3 cut(s) 13, 374, 664
BfmI CTRYAG 1 cut(s) 457
BisI GCNGC 5 cut(s) 14, 67, 460, 800, 1068
BlsI GCNGC 5 cut(s) 15, 68, 461, 801, 1069
Bme1390I CCNGG 4 cut(s) 216, 558, 793, 1054
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 831
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 1 cut(s) 978
BmrFI CCNGG 4 cut(s) 216, 558, 793, 1054
BmsI GCATC 1 cut(s) 841
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 938
BsaJI CCNNGG 4 cut(s) 44, 215, 648, 1053
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 4 cut(s) 172, 202, 755, 785
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 154
BseBI CCWGG 4 cut(s) 216, 558, 793, 1054
BseDI CCNNGG 4 cut(s) 44, 215, 648, 1053
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 2 cut(s) 198, 650
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 3 cut(s) 25, 471, 811
BseYI CCCAGC 2 cut(s) 167, 1006
BsgI GTGCAG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 49, 80, 1052
BshNI GGYRCC 1 cut(s) 976
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 2 cut(s) 193, 924
BsiHKCI CYCGRG 1 cut(s) 831
BsiSI CCGG 2 cut(s) 155, 355
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 3 cut(s) 13, 374, 664
BsmFI GGGAC 1 cut(s) 983
BsnI GGCC 3 cut(s) 49, 80, 1052
BsoBI CYCGRG 1 cut(s) 831
Bsp1286I GDGCHC 2 cut(s) 193, 924
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 5 cut(s) 211, 280, 444, 499, 994
BspACI CCGC 3 cut(s) 66, 138, 908
BspANI GGCC 3 cut(s) 49, 80, 1052
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 154
BspHI TCATGA 2 cut(s) 439, 870
BspLI GGNNCC 1 cut(s) 978
BspMAI CTGCAG 1 cut(s) 461
BspPI GGATC 2 cut(s) 206, 1002
BspQI GCTCTTC 2 cut(s) 198, 534
BspT107I GGYRCC 1 cut(s) 976
BsrFI RCCGGY 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 4 cut(s) 44, 215, 648, 1053
BssMI GATC 5 cut(s) 211, 280, 444, 499, 994
BssT1I CCWWGG 1 cut(s) 648
Bst2UI CCWGG 4 cut(s) 216, 558, 793, 1054
Bst4CI ACNGT 3 cut(s) 205, 413, 788
Bst6I CTCTTC 3 cut(s) 101, 198, 534
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 5 cut(s) 214, 283, 447, 502, 997
BstMAI GTCTC 3 cut(s) 13, 374, 664
BstMBI GATC 5 cut(s) 211, 280, 444, 499, 994
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 907
BstNI CCWGG 4 cut(s) 216, 558, 793, 1054
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 4 cut(s) 214, 556, 791, 1052
BstSFI CTRYAG 1 cut(s) 457
BstV1I GCAGC 3 cut(s) 25, 471, 811
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 3 cut(s) 49, 80, 1052
BtsIMutI CAGTG 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 854
CciI TCATGA 2 cut(s) 439, 870
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 652
Csp6I GTAC 5 cut(s) 4, 306, 414, 645, 977
CviAII CATG 8 cut(s) 164, 229, 300, 417, 440, 760, 820, 871
CviQI GTAC 5 cut(s) 4, 306, 414, 645, 977
DdeI CTNAG 1 cut(s) 51
DpnI GATC 5 cut(s) 213, 282, 446, 501, 996
DpnII GATC 5 cut(s) 211, 280, 444, 499, 994
EaeI YGGCCR 2 cut(s) 78, 1050
EagI CGGCCG 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 101, 198, 534
EarI CTCTTC 3 cut(s) 101, 198, 534
Ecl136II GAGCTC 1 cut(s) 922
EclXI CGGCCG 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 924
Eco47I GGWCC 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 922
Eco57I CTGAAG 5 cut(s) 218, 257, 515, 903, 917
Eco88I CYCGRG 1 cut(s) 831
EcoICRI GAGCTC 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 736
EcoRII CCWGG 4 cut(s) 214, 556, 791, 1052
EcoT14I CCWWGG 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 8 cut(s) 167, 232, 303, 420, 443, 763, 823, 874
FalI AAGNNNNNCTT 4 cut(s) 255, 287, 513, 545
FaqI GGGAC 1 cut(s) 983
FatI CATG 8 cut(s) 163, 228, 299, 416, 439, 759, 819, 870
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 5 cut(s) 14, 67, 460, 800, 1068
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 5 cut(s) 14, 67, 460, 800, 1068
GluI GCNGC 5 cut(s) 14, 67, 460, 800, 1068
GsaI CCCAGC 2 cut(s) 171, 1010
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 3 cut(s) 49, 80, 1052
HapII CCGG 2 cut(s) 155, 355
Hin1II CATG 8 cut(s) 167, 232, 303, 420, 443, 763, 823, 874
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 2 cut(s) 55, 754
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 2 cut(s) 155, 355
HphI GGTGA 3 cut(s) 259, 298, 548
Hpy166II GTNNAC 2 cut(s) 352, 484
Hpy188I TCNGA 5 cut(s) 54, 198, 276, 504, 999
Hpy188III TCNNGA 9 cut(s) 59, 155, 322, 440, 476, 833, 871, 1029, 1041
Hpy8I GTNNAC 2 cut(s) 352, 484
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 4 cut(s) 152, 281, 283, 775
HpyCH4III ACNGT 3 cut(s) 205, 413, 788
HpyCH4IV ACGT 3 cut(s) 547, 643, 744
HpyCH4V TGCA 4 cut(s) 145, 459, 543, 1067
HpyF10VI GCNNNNNNNGC 1 cut(s) 907
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 3 cut(s) 547, 643, 744
Hsp92II CATG 8 cut(s) 167, 232, 303, 420, 443, 763, 823, 874
Kpn2I TCCGGA 1 cut(s) 154
KpnI GGTACC 1 cut(s) 980
Ksp22I TGATCA 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 5 cut(s) 211, 280, 444, 499, 994
LguI GCTCTTC 2 cut(s) 198, 534
LmnI GCTCC 4 cut(s) 34, 559, 637, 763
Lsp1109I GCAGC 3 cut(s) 25, 471, 811
LweI GCATC 1 cut(s) 841
MaeII ACGT 3 cut(s) 547, 643, 744
MaeIII GTNAC 3 cut(s) 205, 265, 583
MalI GATC 5 cut(s) 213, 282, 446, 501, 996
MboI GATC 5 cut(s) 211, 280, 444, 499, 994
MboII GAAGA 8 cut(s) 88, 185, 211, 349, 521, 718, 721, 745
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 2 cut(s) 193, 924
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 8 cut(s) 368, 391, 432, 567, 657, 736, 807, 926
MluNI TGGCCA 1 cut(s) 1052
MmeI TCCRAC 1 cut(s) 765
Mox20I TGGCCA 1 cut(s) 1052
MroI TCCGGA 1 cut(s) 154
MroXI GAANNNNTTC 2 cut(s) 528, 959
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 3 cut(s) 327, 351, 1019
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 2 cut(s) 155, 355
MspR9I CCNGG 4 cut(s) 216, 558, 793, 1054
MvaI CCWGG 4 cut(s) 216, 558, 793, 1054
MwoI GCNNNNNNNGC 1 cut(s) 907
NdeII GATC 5 cut(s) 211, 280, 444, 499, 994
NlaIII CATG 8 cut(s) 167, 232, 303, 420, 443, 763, 823, 874
NlaIV GGNNCC 1 cut(s) 978
NmeAIII GCCGAG 3 cut(s) 25, 56, 754
NmuCI GTSAC 2 cut(s) 265, 583
NspI RCATGY 1 cut(s) 823
PagI TCATGA 2 cut(s) 439, 870
PciI ACATGT 1 cut(s) 819
PciSI GCTCTTC 2 cut(s) 198, 534
PdmI GAANNNNTTC 2 cut(s) 528, 959
PfeI GAWTC 2 cut(s) 55, 754
PfoI TCCNGGA 1 cut(s) 791
PkrI GCNGC 5 cut(s) 15, 68, 461, 801, 1069
PpuMI RGGWCCY 1 cut(s) 652
PscI ACATGT 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 4 cut(s) 214, 556, 791, 1052
PspFI CCCAGC 2 cut(s) 167, 1006
PspGI CCWGG 4 cut(s) 214, 556, 791, 1052
PspN4I GGNNCC 1 cut(s) 978
PspPI GGNCC 1 cut(s) 652
PspPPI RGGWCCY 1 cut(s) 652
PstI CTGCAG 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 5 cut(s) 5, 307, 415, 646, 978
RsaNI GTAC 5 cut(s) 4, 306, 414, 645, 977
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 924
SapI GCTCTTC 2 cut(s) 198, 534
SaqAI TTAA 3 cut(s) 327, 351, 1019
SatI GCNGC 5 cut(s) 14, 67, 460, 800, 1068
Sau3AI GATC 5 cut(s) 211, 280, 444, 499, 994
Sau96I GGNCC 1 cut(s) 652
ScrFI CCNGG 4 cut(s) 216, 558, 793, 1054
SduI GDGCHC 2 cut(s) 193, 924
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 1 cut(s) 457
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 8 cut(s) 368, 391, 432, 567, 657, 736, 807, 926
SsiI CCGC 3 cut(s) 66, 138, 908
SstI GAGCTC 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 214, 556, 791, 1052
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 3 cut(s) 205, 413, 788
TaiI ACGT 3 cut(s) 550, 646, 747
TaqI TCGA 2 cut(s) 498, 933
TasI AATT 8 cut(s) 368, 391, 432, 567, 657, 736, 807, 926
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 2 cut(s) 55, 754
Tru1I TTAA 3 cut(s) 327, 351, 1019
Tru9I TTAA 3 cut(s) 327, 351, 1019
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 265, 583
TseI GCWGC 4 cut(s) 13, 459, 799, 1067
Tsp45I GTSAC 2 cut(s) 265, 583
TspDTI ATGAA 6 cut(s) 212, 425, 525, 533, 887, 919
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 652
XapI RAATTY 5 cut(s) 368, 432, 567, 736, 926
XceI RCATGY 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 2 cut(s) 124, 709
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 2 cut(s) 528, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.