Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019260.1

Orthogroup ID

OG0007435

Physical Location & Seq

Genomic Coordinates Forward (+)

11585 .. 14485

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgtactcacagcagcagagacaaacagctccacagcctcgccctcggcctcagaatcaagacggcggcgatttctcggccgtttgcttcgttctcttcctgttccttgccgtcgccattttcactttggtaatcagcggtctgcaccaagttccgaaaggtcatgttgggttgtattggagaggaggtgctcttctgaagactattacagatccagggtttcgtctcatgattcccctgataaccgactttgagcctgttcaagtgacccttcagactgatcaggtgaaggatattccatgtggtacaaaggggggtgtcgtgattaactttgagaagatagaggttgttaaccggcttcgcaaggaatttgtatatgagacacttctcaattatggagtgaagtatgaccgtacatggatatatgacaaaattcatcatgagatcaatcagttctgcagctcacattcacttcaagatgtctacattgatgtgttcgatcagattgatgaaaagatgaaagaagctcttcagggtgattgcacacgttatgctccaggtattgaaattttcagtgtccgtgtcacaaagccgactatcccagatagtgtaagacataactttgagcagatggaggagcaacgtaccaaggttctaattgctattgagagacagagagtggtggagaaagaggcagaaaccgagaagaagatagctataagtgaagccgagaagaatgccaatgtgagtaagattctcatggagcaaaagttgatggagaaggacagttccaggaggcagcaagaaattgaaaatgacatgtatcttgctcgggaaaagagtgtagcagatgctgatttctacaaagtcatgaaagaggctgaagcaaacagactgaagcttactccgcagttccttgagctcaaattcatcgaggctattgctgacaatacgaaagttttctttggggacaaggtaccaaatatggttttggatcagaggttgctggggaacttcttaaaggtttcgagagagttgtcgggagatgtggccagggaaggaagtgcagcatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

358

Amino Acids

41.11

Weight (kDa)

5.98

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03510
fragaria_vesca	FvH4_4g30104
malus_domestica	MD13G1063100.v1.1 MD16G1061600.v1.1
prunus_persica	Prupe.1G286500_v2.0.a1
pyrus_communis	pycom13g05540
rosa_chinensis	RchiOBHm_Chr4g0438441 RchiOBHm_Chr4g0438461
rosa_laevigata	RLG00000006363 RLG00000006365
rosa_multiflora	Rmu_sc0002327.1_g000022 Rmu_sc0019260.1_g000001 Rmu_sc0019260.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379450 Rroxscaffold_5G00379470
rosa_rugosa	Rorug04G0309900 Rorug04G0310100
rosa_samantha	Rh4AG360800 Rh4CG385900 Rh4DG366700 Rh4DG366900
rosa_wichuraiana	Rw0G006540 Rw0G006560 Rw0G016490 Rw0G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	976
AccB1I	GGYRCC	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	3 cut(s)	66, 138, 908
AclWI	GGATC	2 cut(s)	206, 1002
AcoI	YGGCCR	2 cut(s)	78, 1050
AcsI	RAATTY	4 cut(s)	368, 432, 567, 926
AcuI	CTGAAG	5 cut(s)	218, 257, 515, 903, 917
AfaI	GTAC	5 cut(s)	5, 307, 415, 646, 978
AflIII	ACRYGT	2 cut(s)	545, 819
AgsI	TTSAA	4 cut(s)	263, 476, 566, 812
AjnI	CCWGG	4 cut(s)	214, 556, 791, 1052
AluBI	AGCT	6 cut(s)	29, 462, 527, 716, 901, 922
AluI	AGCT	6 cut(s)	29, 462, 527, 716, 901, 922
Alw21I	GWGCWC	2 cut(s)	193, 924
Alw26I	GTCTC	4 cut(s)	13, 230, 374, 664
AlwI	GGATC	2 cut(s)	206, 1002
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	3 cut(s)	47, 78, 1050
ApeKI	GCWGC	4 cut(s)	13, 459, 799, 1067
ApoI	RAATTY	4 cut(s)	368, 432, 567, 926
Asp700I	GAANNNNTTC	2 cut(s)	528, 959
Asp718I	GGTACC	1 cut(s)	976
AsuHPI	GGTGA	2 cut(s)	298, 548
AvaI	CYCGRG	1 cut(s)	831
BalI	TGGCCA	1 cut(s)	1052
BanI	GGYRCC	1 cut(s)	976
BanII	GRGCYC	1 cut(s)	924
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	193, 924
BbvI	GCAGC	3 cut(s)	25, 471, 811
BccI	CCATC	2 cut(s)	625, 769
BceAI	ACGGC	3 cut(s)	65, 79, 95
BcgI	CGANNNNNNTGC	4 cut(s)	719, 753, 923, 957
BciT130I	CCWGG	4 cut(s)	216, 558, 793, 1054
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	4 cut(s)	13, 230, 374, 664
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	5 cut(s)	14, 67, 460, 800, 1068
BlsI	GCNGC	5 cut(s)	15, 68, 461, 801, 1069
Bme1390I	CCNGG	4 cut(s)	216, 558, 793, 1054
BmeT110I	CYCGRG	1 cut(s)	831
BmiI	GGNNCC	1 cut(s)	978
BmrFI	CCNGG	4 cut(s)	216, 558, 793, 1054
BmsI	GCATC	1 cut(s)	841
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	938
BsaJI	CCNNGG	4 cut(s)	44, 215, 648, 1053
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 755, 785
Bse118I	RCCGGY	1 cut(s)	354
BseBI	CCWGG	4 cut(s)	216, 558, 793, 1054
BseDI	CCNNGG	4 cut(s)	44, 215, 648, 1053
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	198, 650
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	25, 471, 811
BseYI	CCCAGC	1 cut(s)	1006
BsgI	GTGCAG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	49, 80, 1052
BshNI	GGYRCC	1 cut(s)	976
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	193, 924
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	983
BsmAI	GTCTC	4 cut(s)	13, 230, 374, 664
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	983
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	3 cut(s)	49, 80, 1052
BsoBI	CYCGRG	1 cut(s)	831
Bsp1286I	GDGCHC	2 cut(s)	193, 924
Bsp143I	GATC	5 cut(s)	211, 280, 444, 499, 994
BspACI	CCGC	3 cut(s)	66, 138, 908
BspANI	GGCC	3 cut(s)	49, 80, 1052
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	3 cut(s)	228, 439, 870
BspLI	GGNNCC	1 cut(s)	978
BspMAI	CTGCAG	1 cut(s)	461
BspPI	GGATC	2 cut(s)	206, 1002
BspQI	GCTCTTC	2 cut(s)	198, 534
BspT107I	GGYRCC	1 cut(s)	976
BsrFI	RCCGGY	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	4 cut(s)	44, 215, 648, 1053
BssMI	GATC	5 cut(s)	211, 280, 444, 499, 994
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	4 cut(s)	216, 558, 793, 1054
Bst4CI	ACNGT	2 cut(s)	413, 788
Bst6I	CTCTTC	3 cut(s)	101, 198, 534
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	5 cut(s)	214, 283, 447, 502, 997
BstMAI	GTCTC	4 cut(s)	13, 230, 374, 664
BstMBI	GATC	5 cut(s)	211, 280, 444, 499, 994
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNI	CCWGG	4 cut(s)	216, 558, 793, 1054
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	4 cut(s)	214, 556, 791, 1052
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	25, 471, 811
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	3 cut(s)	49, 80, 1052
BtsIMutI	CAGTG	1 cut(s)	580
CaiI	CAGNNNCTG	1 cut(s)	854
CciI	TCATGA	3 cut(s)	228, 439, 870
Cfr10I	RCCGGY	1 cut(s)	354
Csp6I	GTAC	5 cut(s)	4, 306, 414, 645, 977
CviAII	CATG	8 cut(s)	164, 229, 300, 417, 440, 760, 820, 871
CviQI	GTAC	5 cut(s)	4, 306, 414, 645, 977
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	5 cut(s)	213, 282, 446, 501, 996
DpnII	GATC	5 cut(s)	211, 280, 444, 499, 994
EaeI	YGGCCR	2 cut(s)	78, 1050
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	101, 198, 534
EarI	CTCTTC	3 cut(s)	101, 198, 534
Ecl136II	GAGCTC	1 cut(s)	922
EclXI	CGGCCG	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	924
Eco52I	CGGCCG	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	922
Eco57I	CTGAAG	5 cut(s)	218, 257, 515, 903, 917
Eco88I	CYCGRG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	922
EcoRII	CCWGG	4 cut(s)	214, 556, 791, 1052
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	8 cut(s)	167, 232, 303, 420, 443, 763, 823, 874
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 513, 545
FaqI	GGGAC	1 cut(s)	983
FatI	CATG	8 cut(s)	163, 228, 299, 416, 439, 759, 819, 870
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	14, 67, 460, 800, 1068
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	5 cut(s)	14, 67, 460, 800, 1068
GluI	GCNGC	5 cut(s)	14, 67, 460, 800, 1068
GsaI	CCCAGC	1 cut(s)	1010
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	49, 80, 1052
HapII	CCGG	1 cut(s)	355
Hin1II	CATG	8 cut(s)	167, 232, 303, 420, 443, 763, 823, 874
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	3 cut(s)	55, 232, 754
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	2 cut(s)	298, 548
Hpy166II	GTNNAC	2 cut(s)	352, 484
Hpy188I	TCNGA	6 cut(s)	54, 156, 198, 276, 504, 999
Hpy188III	TCNNGA	9 cut(s)	59, 229, 322, 440, 476, 833, 871, 1029, 1041
Hpy8I	GTNNAC	2 cut(s)	352, 484
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	281, 283, 775, 1052
HpyCH4III	ACNGT	2 cut(s)	413, 788
HpyCH4IV	ACGT	2 cut(s)	547, 643
HpyCH4V	TGCA	4 cut(s)	145, 459, 543, 1067
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	2 cut(s)	547, 643
Hsp92II	CATG	8 cut(s)	167, 232, 303, 420, 443, 763, 823, 874
KpnI	GGTACC	1 cut(s)	980
Ksp22I	TGATCA	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	211, 280, 444, 499, 994
LguI	GCTCTTC	2 cut(s)	198, 534
LmnI	GCTCC	4 cut(s)	34, 559, 637, 763
Lsp1109I	GCAGC	3 cut(s)	25, 471, 811
LweI	GCATC	1 cut(s)	841
MaeII	ACGT	2 cut(s)	547, 643
MaeIII	GTNAC	2 cut(s)	265, 583
MalI	GATC	5 cut(s)	213, 282, 446, 501, 996
MboI	GATC	5 cut(s)	211, 280, 444, 499, 994
MboII	GAAGA	8 cut(s)	88, 185, 211, 349, 521, 718, 721, 745
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	193, 924
MlsI	TGGCCA	1 cut(s)	1052
MluCI	AATT	7 cut(s)	368, 391, 432, 567, 657, 807, 926
MluNI	TGGCCA	1 cut(s)	1052
Mox20I	TGGCCA	1 cut(s)	1052
MroXI	GAANNNNTTC	2 cut(s)	528, 959
MscI	TGGCCA	1 cut(s)	1052
MseI	TTAA	3 cut(s)	327, 351, 1019
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	1052
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	4 cut(s)	216, 558, 793, 1054
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	4 cut(s)	216, 558, 793, 1054
MwoI	GCNNNNNNNGC	1 cut(s)	907
NdeII	GATC	5 cut(s)	211, 280, 444, 499, 994
NlaIII	CATG	8 cut(s)	167, 232, 303, 420, 443, 763, 823, 874
NlaIV	GGNNCC	1 cut(s)	978
NmeAIII	GCCGAG	3 cut(s)	25, 56, 754
NmuCI	GTSAC	2 cut(s)	265, 583
NspI	RCATGY	1 cut(s)	823
PagI	TCATGA	3 cut(s)	228, 439, 870
PciI	ACATGT	1 cut(s)	819
PciSI	GCTCTTC	2 cut(s)	198, 534
PctI	GAATGC	1 cut(s)	742
PdmI	GAANNNNTTC	2 cut(s)	528, 959
PfeI	GAWTC	3 cut(s)	55, 232, 754
PfoI	TCCNGGA	1 cut(s)	791
PkrI	GCNGC	5 cut(s)	15, 68, 461, 801, 1069
PscI	ACATGT	1 cut(s)	819
Psp124BI	GAGCTC	1 cut(s)	924
Psp6I	CCWGG	4 cut(s)	214, 556, 791, 1052
PspFI	CCCAGC	1 cut(s)	1006
PspGI	CCWGG	4 cut(s)	214, 556, 791, 1052
PspN4I	GGNNCC	1 cut(s)	978
PstI	CTGCAG	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	5 cut(s)	5, 307, 415, 646, 978
RsaNI	GTAC	5 cut(s)	4, 306, 414, 645, 977
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	924
SapI	GCTCTTC	2 cut(s)	198, 534
SaqAI	TTAA	3 cut(s)	327, 351, 1019
SatI	GCNGC	5 cut(s)	14, 67, 460, 800, 1068
Sau3AI	GATC	5 cut(s)	211, 280, 444, 499, 994
ScrFI	CCNGG	4 cut(s)	216, 558, 793, 1054
SduI	GDGCHC	2 cut(s)	193, 924
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
Sse9I	AATT	7 cut(s)	368, 391, 432, 567, 657, 807, 926
SsiI	CCGC	3 cut(s)	66, 138, 908
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	4 cut(s)	214, 556, 791, 1052
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	413, 788
TaiI	ACGT	2 cut(s)	550, 646
TaqI	TCGA	3 cut(s)	498, 933, 1028
TasI	AATT	7 cut(s)	368, 391, 432, 567, 657, 807, 926
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	55, 232, 754
Tru1I	TTAA	3 cut(s)	327, 351, 1019
Tru9I	TTAA	3 cut(s)	327, 351, 1019
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	2 cut(s)	265, 583
TseI	GCWGC	4 cut(s)	13, 459, 799, 1067
Tsp45I	GTSAC	2 cut(s)	265, 583
TspDTI	ATGAA	5 cut(s)	425, 525, 533, 887, 919
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	580
XapI	RAATTY	4 cut(s)	368, 432, 567, 926
XceI	RCATGY	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	2 cut(s)	528, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.