Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005151

Physical Location & Seq

Genomic Coordinates Reverse (-)

1121900 .. 1123267

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATTATTGAAAGAGCTCGAGTTCCGTTGAGCCGATGGCAACAAGCGGCCGTGGCGATGGGATCTGCTCTCGGTGCGTTGGTTGATCCTCGTAGAGCGGATCTAATCGCTGCTCTCGGCGAAACTACCGGTAAACCAGCTTTTGAAATGGTTCTTGAGAGAATGAAGAAGAGCGAAGAAGGAAGAGCTATATTATTGGAGCGTCCTCGAGTTGTGTCAGAGCAAGTAGGTCATGCTTGGGATCTACCAGAAAACACATTTGGAGCTGCATATGCTAAATTCATGGGATCTAGAAACTTCTCTCCCGATGATCGTCCGCCCGTAAGATTCATGGAGACGGATGAATTGGCTTACGTAGCGACACGGGCACGCGAAGTTCACGACTTATGGCACACTCTGTTTGGCCTTCCTACGAATCTTATCGGCGAGTCGTCTTTGAAAGTTATCGAGTTTGAGCAAATGTATCTTCCGATGTGTATGCTCTCTGTGATTGGAGGTACTGTGAGGTTCAACGAGAAGCAAAGATCAATGTTCTTGAAGCATTACCTTCCTTGGGCTGTTCGTGCTGGAAGACAATGCACTGACCTCATGTGTGTGTACTATGAGCGTCACTTTAGTGAAGACTTGGAGCAAGTTCGTAGAAAATGGGGAATCATCCCTGCTCCTCAACATCCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coq4

Protein Analysis

226

Amino Acids

25.88

Weight (kDa)

8.44

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coq4	PF05019	7 - 222	9.7e-85	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03690
fragaria_vesca	FvH4_4g29830
malus_domestica	MD13G1060600.v1.1 MD16G1059800.v1.1
prunus_persica	Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1
pyrus_communis	pycom13g05400
rosa_chinensis	RchiOBHm_Chr4g0438081
rosa_laevigata	RLG00000001446 RLG00000001447 RLG00000006389
rosa_multiflora	Rmu_sc0004728.1_g000006 Rmu_sc0006047.1_g000002 Rmu_sc0027297.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271190 Rroxscaffold_5G00379220
rosa_rugosa	Rorug04G0306500 Rorug04G0306600 Rorug04G0306700 Rorug04G0306800
rosa_samantha	Rh4AG358300 Rh4BG369200 Rh4CG383300 Rh7BG050900 Rh7CG053000 Rh7DG051000
rosa_wichuraiana	Rw0G016230 Rw7G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	1 cut(s)	372
AciI	CCGC	3 cut(s)	47, 98, 317
AclWI	GGATC	5 cut(s)	70, 80, 108, 249, 295
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	2 cut(s)	499, 599
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	11, 146, 439, 511, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	4 cut(s)	17, 140, 188, 266
AluI	AGCT	4 cut(s)	17, 140, 188, 266
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	5 cut(s)	70, 80, 108, 249, 295
Ama87I	CYCGRG	2 cut(s)	18, 207
AoxI	GGCC	2 cut(s)	48, 403
ApeKI	GCWGC	2 cut(s)	110, 266
ApoI	RAATTY	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	150
AvaI	CYCGRG	2 cut(s)	18, 207
BaeGI	GKGCMC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	577, 627
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	97, 253
BccI	CCATC	2 cut(s)	30, 52
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	3 cut(s)	48, 111, 267
BlsI	GCNGC	3 cut(s)	49, 112, 268
BmeT110I	CYCGRG	2 cut(s)	18, 207
BpiI	GAAGAC	2 cut(s)	577, 627
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	51, 551
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	51, 551
BseGI	GGATG	3 cut(s)	346, 654, 670
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	654
BseSI	GKGCMC	1 cut(s)	370
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	97, 253
Bsh1236I	CGCG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 405
BshTI	ACCGGT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	2 cut(s)	18, 207
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	50, 405
BsoBI	CYCGRG	2 cut(s)	18, 207
Bsp1286I	GDGCHC	2 cut(s)	19, 370
Bsp143I	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
BspACI	CCGC	3 cut(s)	47, 98, 317
BspANI	GGCC	2 cut(s)	50, 405
BspFNI	CGCG	1 cut(s)	372
BspPI	GGATC	5 cut(s)	70, 80, 108, 249, 295
BspQI	GCTCTTC	2 cut(s)	164, 178
BsrBI	CCGCTC	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	51, 551
BssMI	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
BssT1I	CCWWGG	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	2 cut(s)	164, 178
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	346, 654, 670
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	7 cut(s)	65, 88, 103, 244, 290, 313, 527
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 74, 272, 356, 365, 563
BstSLI	GKGCMC	1 cut(s)	370
BstSNI	TACGTA	1 cut(s)	355
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	97, 253
BstV2I	GAAGAC	2 cut(s)	577, 627
BstX2I	RGATCY	4 cut(s)	62, 100, 241, 287
BstYI	RGATCY	4 cut(s)	62, 100, 241, 287
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 405
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	346, 654, 670
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	128
CseI	GACGC	2 cut(s)	191, 596
Csp6I	GTAC	2 cut(s)	498, 598
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	4 cut(s)	233, 283, 331, 589
CviJI	RGCY	9 cut(s)	17, 33, 50, 140, 188, 266, 350, 405, 557
CviKI_1	RGCY	9 cut(s)	17, 33, 50, 140, 188, 266, 350, 405, 557
CviQI	GTAC	2 cut(s)	498, 598
DpnI	GATC	7 cut(s)	64, 87, 102, 243, 289, 312, 526
DpnII	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	164, 178
EarI	CTCTTC	2 cut(s)	164, 178
EciI	GGCGGA	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	17
EclXI	CGGCCG	1 cut(s)	48
Eco105I	TACGTA	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	19
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	17
Eco88I	CYCGRG	2 cut(s)	18, 207
EcoICRI	GAGCTC	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	551
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	551
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	4 cut(s)	236, 286, 334, 592
FatI	CATG	4 cut(s)	232, 282, 330, 588
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	48, 111, 267
FokI	GGATG	3 cut(s)	353, 641, 657
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	3 cut(s)	48, 111, 267
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	3 cut(s)	48, 111, 267
HaeIII	GGCC	2 cut(s)	50, 405
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	191, 596
Hin1II	CATG	4 cut(s)	236, 286, 334, 592
HinfI	GANTC	4 cut(s)	327, 415, 428, 651
HpaII	CCGG	1 cut(s)	129
Hpy166II	GTNNAC	3 cut(s)	134, 379, 598
Hpy188I	TCNGA	2 cut(s)	220, 471
Hpy188III	TCNNGA	5 cut(s)	155, 291, 305, 380, 535
Hpy8I	GTNNAC	3 cut(s)	134, 379, 598
HpyAV	CCTTC	3 cut(s)	173, 416, 557
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	269, 579
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 74, 272, 356, 365, 563
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	236, 286, 334, 592
Kzo9I	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
LguI	GCTCTTC	2 cut(s)	164, 178
LmnI	GCTCC	4 cut(s)	199, 263, 628, 667
LpnPI	CCDG	5 cut(s)	142, 150, 261, 552, 672
Lsp1109I	GCAGC	2 cut(s)	97, 253
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	7 cut(s)	64, 87, 102, 243, 289, 312, 526
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
MboII	GAAGA	7 cut(s)	178, 181, 188, 195, 458, 582, 632
MflI	RGATCY	4 cut(s)	62, 100, 241, 287
MhlI	GDGCHC	2 cut(s)	19, 370
MluCI	AATT	2 cut(s)	278, 344
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	6 cut(s)	99, 216, 488, 498, 596, 675
MroXI	GAANNNNTTC	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	593, 615
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	6 cut(s)	53, 74, 272, 356, 365, 563
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
NlaIII	CATG	4 cut(s)	236, 286, 334, 592
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	608
OliI	CACNNNNGTG	1 cut(s)	615
PaeR7I	CTCGAG	2 cut(s)	18, 207
PciSI	GCTCTTC	2 cut(s)	164, 178
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	327, 415, 651
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	49, 112, 268
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	19
PspXI	VCTCGAGB	2 cut(s)	18, 207
PsuI	RGATCY	4 cut(s)	62, 100, 241, 287
RsaI	GTAC	2 cut(s)	499, 599
RsaNI	GTAC	2 cut(s)	498, 598
RseI	CAYNNNNRTG	2 cut(s)	593, 615
SacI	GAGCTC	1 cut(s)	19
SapI	GCTCTTC	2 cut(s)	164, 178
SatI	GCNGC	3 cut(s)	48, 111, 267
Sau3AI	GATC	7 cut(s)	62, 85, 100, 241, 287, 310, 524
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	2 cut(s)	19, 370
Sfr274I	CTCGAG	2 cut(s)	18, 207
SlaI	CTCGAG	2 cut(s)	18, 207
SmiMI	CAYNNNNRTG	2 cut(s)	593, 615
SmlI	CTYRAG	3 cut(s)	18, 155, 207
SmoI	CTYRAG	3 cut(s)	18, 155, 207
SnaBI	TACGTA	1 cut(s)	355
Sse9I	AATT	2 cut(s)	278, 344
SsiI	CCGC	3 cut(s)	47, 98, 317
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	3 cut(s)	19, 208, 447
TasI	AATT	2 cut(s)	278, 344
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	327, 415, 651
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	110, 266
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	179, 271, 319, 357
TspGWI	ACGGA	2 cut(s)	15, 353
TspRI	CASTG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	290
XhoI	CTCGAG	2 cut(s)	18, 207
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.