Rw7G004200

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005151
Physical Location & Seq
Reverse (-)
3550654 .. 3551932
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004200.1

Sequence Viewer

Length: 645 bp
ATGATCGGAGGTGCTCGTGTTCGGCTGAACCAGTGGCAGCACGCGGCTGTGGTAGTTGGGTCGGCGGTGGGGGCATTGTTGGACCCAAGAAGAGCTGACCTGATAGCAGCTTTGGGGGAGACAACTGGGAAGCCGGCATTTGAAAGAGTTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAGCCATACTGTCGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATAATCGACCACCAGTGCGTTTCATGGAAATAGATGAACTTGCATGTGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTCTTTAACCTTCCAACAAACTTGATGGGTGAGTCAGCACTTAAAGTAATAGAGTTGCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGTTATAGGGGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTAGAGCTGGTATGCTGTCAACCGATCTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

214

Amino Acids

24.32

Weight (kDa)

9.07

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coq4 PF05019 6 - 213 1.2e-77 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 44, 65, 245
AclWI GGATC 2 cut(s) 246, 292
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 489
AgsI TTSAA 2 cut(s) 143, 508
AluBI AGCT 3 cut(s) 95, 110, 563
AluI AGCT 3 cut(s) 95, 110, 563
Alw21I GWGCWC 2 cut(s) 16, 378
Alw26I GTCTC 1 cut(s) 113
Alw44I GTGCAC 1 cut(s) 374
AlwI GGATC 2 cut(s) 246, 292
AoxI GGCC 1 cut(s) 552
ApaLI GTGCAC 1 cut(s) 374
ApeKI GCWGC 4 cut(s) 37, 107, 263, 451
AspS9I GGNCC 2 cut(s) 82, 552
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 378
BanII GRGCYC 2 cut(s) 367, 497
BauI CACGAG 2 cut(s) 15, 366
Bbv12I GWGCWC 2 cut(s) 16, 378
BbvI GCAGC 4 cut(s) 49, 119, 250, 463
BccI CCATC 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 288
BglI GCCNNNNNGGC 2 cut(s) 177, 362
BisI GCNGC 5 cut(s) 38, 45, 108, 264, 452
BlsI GCNGC 5 cut(s) 39, 46, 109, 265, 453
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 82, 552
BmiI GGNNCC 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 548
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 31, 130, 317
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 1 cut(s) 634
BseLI CCNNNNNNNGG 1 cut(s) 489
BseNI ACTGG 3 cut(s) 31, 130, 317
BseSI GKGCMC 1 cut(s) 378
BseXI GCAGC 4 cut(s) 49, 119, 250, 463
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 554
BsiHKAI GWGCWC 2 cut(s) 16, 378
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 554
Bsp1286I GDGCHC 4 cut(s) 16, 367, 378, 497
Bsp143I GATC 4 cut(s) 3, 238, 284, 580
BspACI CCGC 3 cut(s) 44, 65, 245
BspANI GGCC 1 cut(s) 554
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 2 cut(s) 246, 292
BspQI GCTCTTC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 3 cut(s) 31, 130, 317
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 4 cut(s) 3, 238, 284, 580
BssSI CACGAG 2 cut(s) 15, 366
BssT1I CCWWGG 1 cut(s) 548
Bst2BI CACGAG 2 cut(s) 15, 366
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 85, 158
BstC8I GCNNGC 2 cut(s) 42, 135
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 4 cut(s) 6, 241, 287, 583
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 4 cut(s) 3, 238, 284, 580
BstMWI GCNNNNNNNGC 6 cut(s) 71, 177, 269, 353, 362, 560
BstNSI RCATGY 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 378
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 4 cut(s) 49, 119, 250, 463
BstX2I RGATCY 2 cut(s) 238, 284
BstYI RGATCY 2 cut(s) 238, 284
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 38, 324
Cac8I GCNNGC 2 cut(s) 42, 135
CciI TCATGA 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 82, 552
Csp6I GTAC 1 cut(s) 460
CviAII CATG 9 cut(s) 230, 234, 280, 328, 348, 358, 469, 586, 614
CviQI GTAC 1 cut(s) 460
DpnI GATC 4 cut(s) 5, 240, 286, 582
DpnII GATC 4 cut(s) 3, 238, 284, 580
Eam1104I CTCTTC 2 cut(s) 85, 158
EarI CTCTTC 2 cut(s) 85, 158
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 2 cut(s) 367, 497
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 367, 497
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 9 cut(s) 233, 237, 283, 331, 351, 361, 472, 589, 617
FatI CATG 9 cut(s) 229, 233, 279, 327, 347, 357, 468, 585, 613
Fnu4HI GCNGC 5 cut(s) 38, 45, 108, 264, 452
FokI GGATG 1 cut(s) 641
FriOI GRGCYC 2 cut(s) 367, 497
Fsp4HI GCNGC 5 cut(s) 38, 45, 108, 264, 452
FspBI CTAG 1 cut(s) 288
GluI GCNGC 5 cut(s) 38, 45, 108, 264, 452
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 554
HapII CCGG 1 cut(s) 134
Hin1II CATG 9 cut(s) 233, 237, 283, 331, 351, 361, 472, 589, 617
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 1 cut(s) 425
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 376, 576
Hpy188I TCNGA 4 cut(s) 8, 156, 196, 636
Hpy188III TCNNGA 3 cut(s) 302, 368, 614
Hpy8I GTNNAC 2 cut(s) 376, 576
HpyAV CCTTC 3 cut(s) 170, 413, 473
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 5 cut(s) 218, 233, 347, 376, 451
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 177, 269, 353, 362, 560
Hsp92II CATG 9 cut(s) 233, 237, 283, 331, 351, 361, 472, 589, 617
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 4 cut(s) 3, 238, 284, 580
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 4 cut(s) 49, 119, 250, 463
MaeI CTAG 1 cut(s) 288
MalI GATC 4 cut(s) 5, 240, 286, 582
MboI GATC 4 cut(s) 3, 238, 284, 580
MboII GAAGA 4 cut(s) 102, 175, 233, 523
MflI RGATCY 2 cut(s) 238, 284
MhlI GDGCHC 4 cut(s) 16, 367, 378, 497
MluCI AATT 1 cut(s) 524
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 3 cut(s) 60, 174, 431
MnlI CCTC 6 cut(s) 354, 364, 404, 495, 610, 619
Mph1103I ATGCAT 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 133
MseI TTAA 2 cut(s) 399, 435
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 6 cut(s) 71, 177, 269, 353, 362, 560
NaeI GCCGGC 1 cut(s) 135
NdeII GATC 4 cut(s) 3, 238, 284, 580
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 9 cut(s) 233, 237, 283, 331, 351, 361, 472, 589, 617
NlaIV GGNNCC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 351
PagI TCATGA 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 135
PkrI GCNGC 5 cut(s) 39, 46, 109, 265, 453
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 82, 552
PsuI RGATCY 2 cut(s) 238, 284
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 612
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 399, 435
SatI GCNGC 5 cut(s) 38, 45, 108, 264, 452
Sau3AI GATC 4 cut(s) 3, 238, 284, 580
Sau96I GGNCC 2 cut(s) 82, 552
SchI GAGTC 1 cut(s) 434
SduI GDGCHC 4 cut(s) 16, 367, 378, 497
SetI ASST 9 cut(s) 13, 97, 102, 112, 375, 405, 465, 506, 565
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 612
Sse9I AATT 1 cut(s) 524
SsiI CCGC 3 cut(s) 44, 65, 245
SspMI CTAG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 310
TasI AATT 1 cut(s) 524
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 399, 435
Tru9I TTAA 2 cut(s) 399, 435
TscAI CASTG 2 cut(s) 38, 324
TseI GCWGC 4 cut(s) 37, 107, 263, 451
TspDTI ATGAA 5 cut(s) 176, 268, 316, 354, 602
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 38, 324
VneI GTGCAC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 82
XceI RCATGY 1 cut(s) 351
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.