Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005151

Physical Location & Seq

Genomic Coordinates Forward (+)

60974341 .. 60978441

Gene Structure 4101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATCGAGTCCATTGTTGGAGTAGCTGAAATCTACTGCTTTCGGAGGGATTTGAAGGAAAAGAGGGAAGCAGCCACCATGATCGGAGGTGCTCGTGTTCGGCTGAACGGGTGGCAGCAGGCGGCGGTGGCAGTTGGGTCGGCAGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCAGCTCTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAATTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAGCCATACTGTTGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATGATCGACCACCAGTGCGTTTCATGGAAACAGATGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTGTTTGACCTTCCAACAAACTTGATGGGTGAGTCAGCACTCAAAGTAATAGAGTTTCAGCAAATGTATCTTCCCATGTGCTTGATGTCCGTTATAGGAGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTCGAGCTGGTATGCAGTCAACAGAACTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTGCTGCACCTAAACAAACCCAAGCAGCAGCAGCTTCACCTGGTCTAGTGGAGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coq4

Protein Analysis

266

Amino Acids

29.92

Weight (kDa)

8.73

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coq4	PF05019	32 - 247	3.3e-84	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03690
fragaria_vesca	FvH4_4g29830
malus_domestica	MD13G1060600.v1.1 MD16G1059800.v1.1
prunus_persica	Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1
pyrus_communis	pycom13g05400
rosa_chinensis	RchiOBHm_Chr4g0438081
rosa_laevigata	RLG00000001446 RLG00000001447 RLG00000006389
rosa_multiflora	Rmu_sc0004728.1_g000006 Rmu_sc0006047.1_g000002 Rmu_sc0027297.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271190 Rroxscaffold_5G00379220
rosa_rugosa	Rorug04G0306500 Rorug04G0306600 Rorug04G0306700 Rorug04G0306800
rosa_samantha	Rh4AG358300 Rh4BG369200 Rh4CG383300 Rh7BG050900 Rh7CG053000 Rh7DG051000
rosa_wichuraiana	Rw0G016230 Rw7G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	122, 125, 323
AclWI	GGATC	2 cut(s)	324, 370
AcuI	CTGAAG	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	55, 586
AjnI	CCWGG	1 cut(s)	778
AluBI	AGCT	5 cut(s)	26, 173, 188, 641, 773
AluI	AGCT	5 cut(s)	26, 173, 188, 641, 773
Alw21I	GWGCWC	2 cut(s)	94, 456
Alw26I	GTCTC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	324, 370
AoxI	GGCC	1 cut(s)	630
ApaLI	GTGCAC	1 cut(s)	452
ApeKI	GCWGC	8 cut(s)	71, 115, 185, 341, 743, 764, 767, 770
AspS9I	GGNCC	2 cut(s)	160, 630
AsuHPI	GGTGA	2 cut(s)	512, 768
AsuII	TTCGAA	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	445
BauI	CACGAG	2 cut(s)	93, 444
Bbv12I	GWGCWC	2 cut(s)	94, 456
BbvI	GCAGC	8 cut(s)	83, 127, 197, 328, 730, 776, 779, 782
BccI	CCATC	1 cut(s)	490
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	366, 785
BglI	GCCNNNNNGGC	2 cut(s)	255, 440
BisI	GCNGC	9 cut(s)	72, 116, 123, 186, 342, 744, 765, 768, 771
BlsI	GCNGC	9 cut(s)	73, 117, 124, 187, 343, 745, 766, 769, 772
Bme1390I	CCNGG	1 cut(s)	780
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 630
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	780
BmrI	ACTGGG	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	626
BsaXI	ACNNNNNCTCC	4 cut(s)	561, 591, 721, 751
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	208, 395
Bse3DI	GCAATG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	1 cut(s)	712
BseMI	GCAATG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	208, 395
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	8 cut(s)	83, 127, 197, 328, 730, 776, 779, 782
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	1 cut(s)	632
BsiHKAI	GWGCWC	2 cut(s)	94, 456
BsiSI	CCGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	632
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	3 cut(s)	94, 445, 456
Bsp143I	GATC	5 cut(s)	3, 81, 316, 362, 385
BspACI	CCGC	3 cut(s)	122, 125, 323
BspANI	GGCC	1 cut(s)	632
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	324, 370
BspQI	GCTCTTC	1 cut(s)	163
BspT104I	TTCGAA	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	208, 395
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	5 cut(s)	3, 81, 316, 362, 385
BssSI	CACGAG	2 cut(s)	93, 444
BssT1I	CCWWGG	1 cut(s)	626
Bst2BI	CACGAG	2 cut(s)	93, 444
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	2 cut(s)	163, 236
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	120, 213
BstF5I	GGATG	1 cut(s)	712
BstKTI	GATC	5 cut(s)	6, 84, 319, 365, 388
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	5 cut(s)	3, 81, 316, 362, 385
BstMWI	GCNNNNNNNGC	9 cut(s)	128, 149, 255, 347, 431, 440, 638, 743, 770
BstNI	CCWGG	1 cut(s)	780
BstSCI	CCNGG	1 cut(s)	778
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	8 cut(s)	83, 127, 197, 328, 730, 776, 779, 782
BstX2I	RGATCY	2 cut(s)	316, 362
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	2 cut(s)	316, 362
BsuRI	GGCC	1 cut(s)	632
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 402
Cac8I	GCNNGC	2 cut(s)	120, 213
CciI	TCATGA	1 cut(s)	691
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	160, 630
CsiI	ACCWGGT	1 cut(s)	778
CviAII	CATG	9 cut(s)	79, 308, 312, 358, 406, 436, 547, 664, 692
DpnI	GATC	5 cut(s)	5, 83, 318, 364, 387
DpnII	GATC	5 cut(s)	3, 81, 316, 362, 385
Eam1104I	CTCTTC	2 cut(s)	163, 236
EarI	CTCTTC	2 cut(s)	163, 236
EciI	GGCGGA	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	9 cut(s)	82, 311, 315, 361, 409, 439, 550, 667, 695
FatI	CATG	9 cut(s)	78, 307, 311, 357, 405, 435, 546, 663, 691
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	9 cut(s)	72, 116, 123, 186, 342, 744, 765, 768, 771
FokI	GGATG	1 cut(s)	719
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	9 cut(s)	72, 116, 123, 186, 342, 744, 765, 768, 771
FspBI	CTAG	2 cut(s)	366, 785
GluI	GCNGC	9 cut(s)	72, 116, 123, 186, 342, 744, 765, 768, 771
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	9 cut(s)	82, 311, 315, 361, 409, 439, 550, 667, 695
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	2 cut(s)	8, 503
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	512, 768
Hpy166II	GTNNAC	2 cut(s)	454, 654
Hpy188I	TCNGA	4 cut(s)	45, 86, 234, 714
Hpy188III	TCNNGA	3 cut(s)	380, 446, 692
Hpy8I	GTNNAC	2 cut(s)	454, 654
HpyAV	CCTTC	3 cut(s)	49, 248, 491
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	296, 311, 425, 454, 649, 746
HpyF10VI	GCNNNNNNNGC	9 cut(s)	128, 149, 255, 347, 431, 440, 638, 743, 770
Hsp92II	CATG	9 cut(s)	82, 311, 315, 361, 409, 439, 550, 667, 695
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	3, 81, 316, 362, 385
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	274, 742
Lsp1109I	GCAGC	8 cut(s)	83, 127, 197, 328, 730, 776, 779, 782
MabI	ACCWGGT	1 cut(s)	778
MaeI	CTAG	2 cut(s)	366, 785
MalI	GATC	5 cut(s)	5, 83, 318, 364, 387
MboI	GATC	5 cut(s)	3, 81, 316, 362, 385
MboII	GAAGA	5 cut(s)	180, 253, 311, 533, 601
MflI	RGATCY	2 cut(s)	316, 362
MhlI	GDGCHC	3 cut(s)	94, 445, 456
MluCI	AATT	2 cut(s)	225, 602
MlyI	GAGTC	2 cut(s)	17, 512
MmeI	TCCRAC	2 cut(s)	252, 509
MnlI	CCTC	9 cut(s)	39, 57, 80, 432, 442, 563, 573, 688, 697
Mph1103I	ATGCAT	1 cut(s)	313
MroNI	GCCGGC	1 cut(s)	211
MslI	CAYNNNNRTG	1 cut(s)	690
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	780
MwoI	GCNNNNNNNGC	9 cut(s)	128, 149, 255, 347, 431, 440, 638, 743, 770
NaeI	GCCGGC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	5 cut(s)	3, 81, 316, 362, 385
NgoMIV	GCCGGC	1 cut(s)	211
NlaIII	CATG	9 cut(s)	82, 311, 315, 361, 409, 439, 550, 667, 695
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	219
PagI	TCATGA	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	213
PkrI	GCNGC	9 cut(s)	73, 117, 124, 187, 343, 745, 766, 769, 772
PleI	GAGTC	2 cut(s)	16, 511
PpsI	GAGTC	2 cut(s)	16, 511
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	160, 630
PsuI	RGATCY	2 cut(s)	316, 362
RseI	CAYNNNNRTG	1 cut(s)	690
SapI	GCTCTTC	1 cut(s)	163
SatI	GCNGC	9 cut(s)	72, 116, 123, 186, 342, 744, 765, 768, 771
Sau3AI	GATC	5 cut(s)	3, 81, 316, 362, 385
Sau96I	GGNCC	2 cut(s)	160, 630
SchI	GAGTC	2 cut(s)	17, 512
ScrFI	CCNGG	1 cut(s)	780
SduI	GDGCHC	3 cut(s)	94, 445, 456
SexAI	ACCWGGT	1 cut(s)	778
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	2 cut(s)	225, 602
SsiI	CCGC	3 cut(s)	122, 125, 323
SspMI	CTAG	2 cut(s)	366, 785
StyD4I	CCNGG	1 cut(s)	778
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	6, 219, 388, 637
TasI	AATT	2 cut(s)	225, 602
TauI	GCSGC	1 cut(s)	125
TscAI	CASTG	2 cut(s)	150, 402
TseI	GCWGC	8 cut(s)	71, 115, 185, 341, 743, 764, 767, 770
TspDTI	ATGAA	5 cut(s)	254, 346, 394, 432, 680
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	2 cut(s)	150, 402
VneI	GTGCAC	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	160
XspI	CTAG	2 cut(s)	366, 785
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.