Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005151

Physical Location & Seq

Genomic Coordinates Forward (+)

66847229 .. 66851319

Gene Structure 4091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG358300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTTGTAATGGTTAGGGATTTGAAGGAAAAGAGGGAAGCAGCCACCATGATCGGAGGTGCTCGTGTTCGGCTGAACGGGTGGCAGCAGGCGGCGGTGGCAGTTGGGTCGGCAGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCAGCTCTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAATTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAGCCATACTGTTGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATGATCGACCACCAGTGCGTTTCATGGAAACAGATGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTGTTTGACCTTCCAACAAACTTGATGGGTGAGTCAGCACTCAAAGTAATAGAGTTTCAGCAAATGTATCTTCCCATGTGCTTGATGTCCGTTATAGGAGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTCGAGCTGGTATGCAGTCAACAGAACTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTGCTGCACCTAAACAAACCCAAGCAGCAGCAGCTTCACCTGGTCTAGTGGAGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coq4

Protein Analysis

256

Amino Acids

28.81

Weight (kDa)

9.07

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coq4	PF05019	22 - 237	2.9e-84	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03690
fragaria_vesca	FvH4_4g29830
malus_domestica	MD13G1060600.v1.1 MD16G1059800.v1.1
prunus_persica	Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1
pyrus_communis	pycom13g05400
rosa_chinensis	RchiOBHm_Chr4g0438081
rosa_laevigata	RLG00000001446 RLG00000001447 RLG00000006389
rosa_multiflora	Rmu_sc0004728.1_g000006 Rmu_sc0006047.1_g000002 Rmu_sc0027297.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271190 Rroxscaffold_5G00379220
rosa_rugosa	Rorug04G0306500 Rorug04G0306600 Rorug04G0306700 Rorug04G0306800
rosa_samantha	Rh4AG358300 Rh4BG369200 Rh4CG383300 Rh7BG050900 Rh7CG053000 Rh7DG051000
rosa_wichuraiana	Rw0G016230 Rw7G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	92, 95, 293
AclWI	GGATC	2 cut(s)	294, 340
AcuI	CTGAAG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	25, 556
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	4 cut(s)	143, 158, 611, 743
AluI	AGCT	4 cut(s)	143, 158, 611, 743
Alw21I	GWGCWC	2 cut(s)	64, 426
Alw26I	GTCTC	1 cut(s)	161
Alw44I	GTGCAC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	294, 340
AoxI	GGCC	1 cut(s)	600
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	8 cut(s)	41, 85, 155, 311, 713, 734, 737, 740
AspS9I	GGNCC	2 cut(s)	130, 600
AsuHPI	GGTGA	2 cut(s)	482, 738
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	415
BauI	CACGAG	2 cut(s)	63, 414
Bbv12I	GWGCWC	2 cut(s)	64, 426
BbvI	GCAGC	8 cut(s)	53, 97, 167, 298, 700, 746, 749, 752
BccI	CCATC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciT130I	CCWGG	1 cut(s)	750
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	336, 755
BglI	GCCNNNNNGGC	2 cut(s)	225, 410
BisI	GCNGC	9 cut(s)	42, 86, 93, 156, 312, 714, 735, 738, 741
BlsI	GCNGC	9 cut(s)	43, 87, 94, 157, 313, 715, 736, 739, 742
Bme1390I	CCNGG	1 cut(s)	750
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	130, 600
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	596
BsaXI	ACNNNNNCTCC	4 cut(s)	531, 561, 691, 721
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	178, 365
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	1 cut(s)	682
BseMI	GCAATG	1 cut(s)	122
BseNI	ACTGG	2 cut(s)	178, 365
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	8 cut(s)	53, 97, 167, 298, 700, 746, 749, 752
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	602
BsiHKAI	GWGCWC	2 cut(s)	64, 426
BsiSI	CCGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	602
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	3 cut(s)	64, 415, 426
Bsp143I	GATC	4 cut(s)	51, 286, 332, 355
BspACI	CCGC	3 cut(s)	92, 95, 293
BspANI	GGCC	1 cut(s)	602
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	294, 340
BspQI	GCTCTTC	1 cut(s)	133
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	178, 365
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	4 cut(s)	51, 286, 332, 355
BssSI	CACGAG	2 cut(s)	63, 414
BssT1I	CCWWGG	1 cut(s)	596
Bst2BI	CACGAG	2 cut(s)	63, 414
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	133, 206
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	90, 183
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	4 cut(s)	54, 289, 335, 358
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	51, 286, 332, 355
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 119, 225, 317, 401, 410, 608, 713, 740
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	748
BstSLI	GKGCMC	1 cut(s)	426
BstV1I	GCAGC	8 cut(s)	53, 97, 167, 298, 700, 746, 749, 752
BstX2I	RGATCY	2 cut(s)	286, 332
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	2 cut(s)	286, 332
BsuRI	GGCC	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 372
Cac8I	GCNNGC	2 cut(s)	90, 183
CciI	TCATGA	1 cut(s)	661
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	130, 600
CsiI	ACCWGGT	1 cut(s)	748
CviAII	CATG	9 cut(s)	49, 278, 282, 328, 376, 406, 517, 634, 662
DpnI	GATC	4 cut(s)	53, 288, 334, 357
DpnII	GATC	4 cut(s)	51, 286, 332, 355
Eam1104I	CTCTTC	2 cut(s)	133, 206
EarI	CTCTTC	2 cut(s)	133, 206
EciI	GGCGGA	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	596
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	9 cut(s)	52, 281, 285, 331, 379, 409, 520, 637, 665
FatI	CATG	9 cut(s)	48, 277, 281, 327, 375, 405, 516, 633, 661
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	9 cut(s)	42, 86, 93, 156, 312, 714, 735, 738, 741
FokI	GGATG	1 cut(s)	689
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	9 cut(s)	42, 86, 93, 156, 312, 714, 735, 738, 741
FspBI	CTAG	2 cut(s)	336, 755
GluI	GCNGC	9 cut(s)	42, 86, 93, 156, 312, 714, 735, 738, 741
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	602
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	9 cut(s)	52, 281, 285, 331, 379, 409, 520, 637, 665
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	2 cut(s)	482, 738
Hpy166II	GTNNAC	2 cut(s)	424, 624
Hpy188I	TCNGA	3 cut(s)	56, 204, 684
Hpy188III	TCNNGA	3 cut(s)	350, 416, 662
Hpy8I	GTNNAC	2 cut(s)	424, 624
HpyAV	CCTTC	3 cut(s)	19, 218, 461
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4V	TGCA	6 cut(s)	266, 281, 395, 424, 619, 716
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 119, 225, 317, 401, 410, 608, 713, 740
Hsp92II	CATG	9 cut(s)	52, 281, 285, 331, 379, 409, 520, 637, 665
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	51, 286, 332, 355
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	244, 712
Lsp1109I	GCAGC	8 cut(s)	53, 97, 167, 298, 700, 746, 749, 752
MabI	ACCWGGT	1 cut(s)	748
MaeI	CTAG	2 cut(s)	336, 755
MalI	GATC	4 cut(s)	53, 288, 334, 357
MboI	GATC	4 cut(s)	51, 286, 332, 355
MboII	GAAGA	5 cut(s)	150, 223, 281, 503, 571
MflI	RGATCY	2 cut(s)	286, 332
MhlI	GDGCHC	3 cut(s)	64, 415, 426
MluCI	AATT	2 cut(s)	195, 572
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	222, 479
MnlI	CCTC	8 cut(s)	27, 50, 402, 412, 533, 543, 658, 667
Mph1103I	ATGCAT	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	660
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	9 cut(s)	98, 119, 225, 317, 401, 410, 608, 713, 740
NaeI	GCCGGC	1 cut(s)	183
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	4 cut(s)	51, 286, 332, 355
NgoMIV	GCCGGC	1 cut(s)	181
NlaIII	CATG	9 cut(s)	52, 281, 285, 331, 379, 409, 520, 637, 665
NlaIV	GGNNCC	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	189
PagI	TCATGA	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	183
PkrI	GCNGC	9 cut(s)	43, 87, 94, 157, 313, 715, 736, 739, 742
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	130, 600
PsuI	RGATCY	2 cut(s)	286, 332
RseI	CAYNNNNRTG	1 cut(s)	660
SapI	GCTCTTC	1 cut(s)	133
SatI	GCNGC	9 cut(s)	42, 86, 93, 156, 312, 714, 735, 738, 741
Sau3AI	GATC	4 cut(s)	51, 286, 332, 355
Sau96I	GGNCC	2 cut(s)	130, 600
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	3 cut(s)	64, 415, 426
SexAI	ACCWGGT	1 cut(s)	748
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	660
Sse9I	AATT	2 cut(s)	195, 572
SsiI	CCGC	3 cut(s)	92, 95, 293
SspMI	CTAG	2 cut(s)	336, 755
StyD4I	CCNGG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	189, 358, 607
TasI	AATT	2 cut(s)	195, 572
TauI	GCSGC	1 cut(s)	95
TscAI	CASTG	2 cut(s)	120, 372
TseI	GCWGC	8 cut(s)	41, 85, 155, 311, 713, 734, 737, 740
TspDTI	ATGAA	5 cut(s)	224, 316, 364, 402, 650
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	2 cut(s)	120, 372
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	130
XspI	CTAG	2 cut(s)	336, 755
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.