Rroxscaffold_3G00271190

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005151
Physical Location & Seq
Forward (+)
63591627 .. 63594133
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271190.1

Sequence Viewer

Length: 780 bp
ATGGACACATGTCTGAGGGATTTGAAGGAAAAGTGGGTAGCAGCCATCATGATCGGAGGTGCTCGTGTTCGGCTGAACCGGTGGCAGCAGGCGGCTGTGGCAGTTGGGTCGGCGGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCAGCTCTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAGTTGTTCAGAGAATGAAGAGTAGCCCTCAAGGCAGAGCCATACTGTTGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATAATCGACCACCAGTGCGTTTCATGGAAACAGACGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTCTTTAACCTTCCAACAAACTTGATGGGTGAGTCAGCACTTAAAGTAATAGAGTTTCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGTTATAGGGGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTAGAGCTGGTATGCAGTCAACAGATCTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTGCAGCTCCTAAACAAACCCAAGCAGCAGCAGCAGCAGCAGCTTCATTTGGTCTAGTGAAGAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

259

Amino Acids

29.11

Weight (kDa)

9.61

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coq4 PF05019 22 - 237 4e-84 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 92, 113, 293
AclWI GGATC 2 cut(s) 294, 340
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 537
AflIII ACRYGT 1 cut(s) 8
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 2 cut(s) 25, 556
AluBI AGCT 5 cut(s) 143, 158, 611, 716, 752
AluI AGCT 5 cut(s) 143, 158, 611, 716, 752
Alw21I GWGCWC 2 cut(s) 64, 426
Alw26I GTCTC 1 cut(s) 161
Alw44I GTGCAC 1 cut(s) 422
AlwI GGATC 2 cut(s) 294, 340
AoxI GGCC 1 cut(s) 600
ApaLI GTGCAC 1 cut(s) 422
AsiGI ACCGGT 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 130, 600
AsuHPI GGTGA 1 cut(s) 482
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 426
BanII GRGCYC 2 cut(s) 415, 545
BauI CACGAG 2 cut(s) 63, 414
Bbv12I GWGCWC 2 cut(s) 64, 426
BccI CCATC 2 cut(s) 53, 460
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 336, 764
BfmI CTRYAG 1 cut(s) 711
BglI GCCNNNNNGGC 2 cut(s) 225, 410
BglII AGATCT 1 cut(s) 628
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 130, 600
BmiI GGNNCC 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 183
BoxI GACNNNNGTC 1 cut(s) 9
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpmI CTGGAG 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 596
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 691, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse118I RCCGGY 2 cut(s) 78, 181
Bse1I ACTGG 2 cut(s) 178, 365
Bse3DI GCAATG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 2 cut(s) 178, 365
BseSI GKGCMC 1 cut(s) 426
BshFI GGCC 1 cut(s) 602
BshTI ACCGGT 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 64, 426
BsiSI CCGG 2 cut(s) 79, 182
BslI CCNNNNNNNGG 1 cut(s) 537
BsmAI GTCTC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 4 cut(s) 64, 415, 426, 545
Bsp143I GATC 4 cut(s) 51, 286, 332, 628
BspACI CCGC 3 cut(s) 92, 113, 293
BspANI GGCC 1 cut(s) 602
BspCNI CTCAG 1 cut(s) 6
BspHI TCATGA 2 cut(s) 48, 661
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 2 cut(s) 294, 340
BspQI GCTCTTC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 78, 181
BsrI ACTGG 2 cut(s) 178, 365
BssAI RCCGGY 2 cut(s) 78, 181
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 4 cut(s) 51, 286, 332, 628
BssSI CACGAG 2 cut(s) 63, 414
BssT1I CCWWGG 1 cut(s) 596
Bst2BI CACGAG 2 cut(s) 63, 414
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 133, 206
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 90, 183
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 682
BstKTI GATC 4 cut(s) 54, 289, 335, 631
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 4 cut(s) 51, 286, 332, 628
BstNSI RCATGY 1 cut(s) 12
BstPAI GACNNNNGTC 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 711
BstSLI GKGCMC 1 cut(s) 426
BstX2I RGATCY 3 cut(s) 286, 332, 628
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 3 cut(s) 286, 332, 628
BsuRI GGCC 1 cut(s) 602
BtsCI GGATG 1 cut(s) 682
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 90, 183
CciI TCATGA 2 cut(s) 48, 661
Cfr10I RCCGGY 2 cut(s) 78, 181
Cfr13I GGNCC 2 cut(s) 130, 600
Csp6I GTAC 1 cut(s) 508
CspAI ACCGGT 1 cut(s) 78
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 1 cut(s) 14
DpnI GATC 4 cut(s) 53, 288, 334, 630
DpnII GATC 4 cut(s) 51, 286, 332, 628
Eam1104I CTCTTC 2 cut(s) 133, 206
EarI CTCTTC 2 cut(s) 133, 206
EciI GGCGGA 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 596
Eco24I GRGCYC 2 cut(s) 415, 545
Eco47I GGWCC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 283
EcoT38I GRGCYC 2 cut(s) 415, 545
ErhI CCWWGG 1 cut(s) 596
FauNDI CATATG 1 cut(s) 397
FokI GGATG 1 cut(s) 689
FriOI GRGCYC 2 cut(s) 415, 545
FspBI CTAG 2 cut(s) 336, 764
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 602
HapII CCGG 2 cut(s) 79, 182
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 1 cut(s) 473
HpaII CCGG 2 cut(s) 79, 182
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 2 cut(s) 424, 624
Hpy188I TCNGA 4 cut(s) 15, 56, 204, 684
Hpy188III TCNNGA 4 cut(s) 49, 350, 416, 662
Hpy8I GTNNAC 2 cut(s) 424, 624
HpyAV CCTTC 3 cut(s) 19, 461, 521
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 266, 281, 395, 424, 619, 713
HpyF3I CTNAG 1 cut(s) 14
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 4 cut(s) 51, 286, 332, 628
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 3 cut(s) 244, 712, 721
MaeI CTAG 2 cut(s) 336, 764
MalI GATC 4 cut(s) 53, 288, 334, 630
MboI GATC 4 cut(s) 51, 286, 332, 628
MboII GAAGA 4 cut(s) 150, 223, 281, 571
MflI RGATCY 3 cut(s) 286, 332, 628
MhlI GDGCHC 4 cut(s) 64, 415, 426, 545
MluCI AATT 1 cut(s) 572
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 222, 479
MnlI CCTC 9 cut(s) 9, 50, 231, 402, 412, 452, 543, 658, 667
Mph1103I ATGCAT 1 cut(s) 283
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 2 cut(s) 447, 483
MslI CAYNNNNRTG 1 cut(s) 660
MspI CCGG 2 cut(s) 79, 182
Mva1269I GAATGC 1 cut(s) 185
NaeI GCCGGC 1 cut(s) 183
NdeI CATATG 1 cut(s) 397
NdeII GATC 4 cut(s) 51, 286, 332, 628
NgoMIV GCCGGC 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 12
NspV TTCGAA 1 cut(s) 189
PagI TCATGA 2 cut(s) 48, 661
PciI ACATGT 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 133
PctI GAATGC 1 cut(s) 185
PdiI GCCGGC 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 78
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PscI ACATGT 1 cut(s) 8
PshAI GACNNNNGTC 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 130, 600
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 3 cut(s) 286, 332, 628
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 660
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 447, 483
Sau3AI GATC 4 cut(s) 51, 286, 332, 628
Sau96I GGNCC 2 cut(s) 130, 600
SchI GAGTC 1 cut(s) 482
SduI GDGCHC 4 cut(s) 64, 415, 426, 545
SfcI CTRYAG 1 cut(s) 711
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 1 cut(s) 572
SsiI CCGC 3 cut(s) 92, 113, 293
SspMI CTAG 2 cut(s) 336, 764
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 189, 358
TasI AATT 1 cut(s) 572
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 2 cut(s) 447, 483
Tru9I TTAA 2 cut(s) 447, 483
TscAI CASTG 1 cut(s) 372
TspDTI ATGAA 5 cut(s) 224, 316, 364, 650, 744
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 1 cut(s) 372
VneI GTGCAC 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 130
XceI RCATGY 1 cut(s) 12
XspI CTAG 2 cut(s) 336, 764
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.