Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027297.1

Orthogroup ID

OG0005151

Physical Location & Seq

Genomic Coordinates Forward (+)

6447 .. 7901

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027297.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggttagggatttgaaggaaaagagggtagcagccaccatgatcggaggtgctcgtgttcggctgaaccggtggcagcaggcggcggtggcagttgggtcggcagtgggggcattgctggacccaagaagagctgacctgatagcagctctgggggagacaactgggaagccggcattcgaaagaattgttcagagaatgaagagtagccctgaaggcagagccatactgttggagcaaccccgtgtaatatctgcaaatgtgggtcatgcatgggatcttccgcccaatacatttggtgctgcctatgcgaagttcatgggatctaggaacttctctccagatgatcgaccaccagtgcgtttcatggaaacagatgaacttgcatatgtagccatgagggctcgtgaggtgcacgacttctggcacaccctgtttgaccttccaacaaacttgatgggtgagtcagcactcaaagtaatagagtttcagcaaatgtatcttcccatgtgcttgatgtccgctataggaggctctgtgaggttcaatgagaagcaaagaaaattgttcttccagcactactttccttgggccattcaagctggtatgcagtcaacagatctcatgtgtatttattatgagaaacactttcatgagaatttggaggatgttcggagaaagtggggtataactcctgctcctgctgcacctaaacaaacccaagcagcagcagcttcacctggtctagtggagaagccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coq4

Protein Analysis

253

Amino Acids

28.43

Weight (kDa)

9.39

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03690
fragaria_vesca	FvH4_4g29830
malus_domestica	MD13G1060600.v1.1 MD16G1059800.v1.1
prunus_persica	Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1
pyrus_communis	pycom13g05400
rosa_chinensis	RchiOBHm_Chr4g0438081
rosa_laevigata	RLG00000001446 RLG00000001447 RLG00000006389
rosa_multiflora	Rmu_sc0004728.1_g000006 Rmu_sc0006047.1_g000002 Rmu_sc0027297.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271190 Rroxscaffold_5G00379220
rosa_rugosa	Rorug04G0306500 Rorug04G0306600 Rorug04G0306700 Rorug04G0306800
rosa_samantha	Rh4AG358300 Rh4BG369200 Rh4CG383300 Rh7BG050900 Rh7CG053000 Rh7DG051000
rosa_wichuraiana	Rw0G016230 Rw7G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	83, 86, 284, 522
AclWI	GGATC	2 cut(s)	285, 331
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	16, 547, 599
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	4 cut(s)	134, 149, 602, 734
AluI	AGCT	4 cut(s)	134, 149, 602, 734
Alw21I	GWGCWC	2 cut(s)	55, 417
Alw26I	GTCTC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	285, 331
AoxI	GGCC	1 cut(s)	591
ApaLI	GTGCAC	1 cut(s)	413
ApeKI	GCWGC	8 cut(s)	32, 76, 146, 302, 704, 725, 728, 731
ApoI	RAATTY	1 cut(s)	658
AsiGI	ACCGGT	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	121, 591
AsuHPI	GGTGA	2 cut(s)	473, 729
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	406
BauI	CACGAG	2 cut(s)	54, 405
Bbv12I	GWGCWC	2 cut(s)	55, 417
BbvI	GCAGC	8 cut(s)	44, 88, 158, 289, 691, 737, 740, 743
BccI	CCATC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	1 cut(s)	741
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	327, 746
BfmI	CTRYAG	1 cut(s)	525
BglI	GCCNNNNNGGC	2 cut(s)	216, 401
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	9 cut(s)	33, 77, 84, 147, 303, 705, 726, 729, 732
BlsI	GCNGC	9 cut(s)	34, 78, 85, 148, 304, 706, 727, 730, 733
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 591
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	741
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	587
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	522, 552, 682, 712
Bse118I	RCCGGY	2 cut(s)	69, 172
Bse1I	ACTGG	2 cut(s)	169, 356
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	1 cut(s)	673
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	169, 356
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	8 cut(s)	44, 88, 158, 289, 691, 737, 740, 743
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	593
BshTI	ACCGGT	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	55, 417
BsiSI	CCGG	2 cut(s)	70, 173
BsmAI	GTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	593
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	55, 406, 417
Bsp143I	GATC	5 cut(s)	42, 277, 323, 346, 619
BspACI	CCGC	4 cut(s)	83, 86, 284, 522
BspANI	GGCC	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	285, 331
BspQI	GCTCTTC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	113
BsrFI	RCCGGY	2 cut(s)	69, 172
BsrI	ACTGG	2 cut(s)	169, 356
BssAI	RCCGGY	2 cut(s)	69, 172
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	5 cut(s)	42, 277, 323, 346, 619
BssSI	CACGAG	2 cut(s)	54, 405
BssT1I	CCWWGG	1 cut(s)	587
Bst2BI	CACGAG	2 cut(s)	54, 405
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	2 cut(s)	124, 197
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	81, 174
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	5 cut(s)	45, 280, 326, 349, 622
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	5 cut(s)	42, 277, 323, 346, 619
BstMWI	GCNNNNNNNGC	9 cut(s)	89, 110, 216, 308, 392, 401, 599, 704, 731
BstNI	CCWGG	1 cut(s)	741
BstSCI	CCNGG	1 cut(s)	739
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	417
BstV1I	GCAGC	8 cut(s)	44, 88, 158, 289, 691, 737, 740, 743
BstX2I	RGATCY	3 cut(s)	277, 323, 619
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	3 cut(s)	277, 323, 619
BsuRI	GGCC	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	673
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 363
Cac8I	GCNNGC	2 cut(s)	81, 174
CciI	TCATGA	1 cut(s)	652
Cfr10I	RCCGGY	2 cut(s)	69, 172
Cfr13I	GGNCC	2 cut(s)	121, 591
CsiI	ACCWGGT	1 cut(s)	739
CspAI	ACCGGT	1 cut(s)	69
CviAII	CATG	9 cut(s)	40, 269, 273, 319, 367, 397, 508, 625, 653
DpnI	GATC	5 cut(s)	44, 279, 325, 348, 621
DpnII	GATC	5 cut(s)	42, 277, 323, 346, 619
Eam1104I	CTCTTC	2 cut(s)	124, 197
EarI	CTCTTC	2 cut(s)	124, 197
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	9 cut(s)	43, 272, 276, 322, 370, 400, 511, 628, 656
FatI	CATG	9 cut(s)	39, 268, 272, 318, 366, 396, 507, 624, 652
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	9 cut(s)	33, 77, 84, 147, 303, 705, 726, 729, 732
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	9 cut(s)	33, 77, 84, 147, 303, 705, 726, 729, 732
FspBI	CTAG	2 cut(s)	327, 746
GluI	GCNGC	9 cut(s)	33, 77, 84, 147, 303, 705, 726, 729, 732
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	593
HapII	CCGG	2 cut(s)	70, 173
Hin1II	CATG	9 cut(s)	43, 272, 276, 322, 370, 400, 511, 628, 656
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	2 cut(s)	70, 173
HphI	GGTGA	2 cut(s)	473, 729
Hpy166II	GTNNAC	2 cut(s)	415, 615
Hpy188I	TCNGA	3 cut(s)	47, 195, 675
Hpy188III	TCNNGA	3 cut(s)	341, 407, 653
Hpy8I	GTNNAC	2 cut(s)	415, 615
HpyAV	CCTTC	3 cut(s)	10, 209, 452
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	257, 272, 386, 415, 610, 707
HpyF10VI	GCNNNNNNNGC	9 cut(s)	89, 110, 216, 308, 392, 401, 599, 704, 731
Hsp92II	CATG	9 cut(s)	43, 272, 276, 322, 370, 400, 511, 628, 656
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Kzo9I	GATC	5 cut(s)	42, 277, 323, 346, 619
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	235, 703
Lsp1109I	GCAGC	8 cut(s)	44, 88, 158, 289, 691, 737, 740, 743
MabI	ACCWGGT	1 cut(s)	739
MaeI	CTAG	2 cut(s)	327, 746
MalI	GATC	5 cut(s)	44, 279, 325, 348, 621
MboI	GATC	5 cut(s)	42, 277, 323, 346, 619
MboII	GAAGA	5 cut(s)	141, 214, 272, 494, 562
MflI	RGATCY	3 cut(s)	277, 323, 619
MhlI	GDGCHC	3 cut(s)	55, 406, 417
MluCI	AATT	3 cut(s)	186, 563, 658
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	213, 470
MnlI	CCTC	7 cut(s)	18, 41, 393, 403, 524, 534, 658
Mph1103I	ATGCAT	1 cut(s)	274
MroNI	GCCGGC	1 cut(s)	172
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	2 cut(s)	70, 173
MspR9I	CCNGG	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	9 cut(s)	89, 110, 216, 308, 392, 401, 599, 704, 731
NaeI	GCCGGC	1 cut(s)	174
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	5 cut(s)	42, 277, 323, 346, 619
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	9 cut(s)	43, 272, 276, 322, 370, 400, 511, 628, 656
NlaIV	GGNNCC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	180
PagI	TCATGA	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	124
PctI	GAATGC	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	174
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	9 cut(s)	34, 78, 85, 148, 304, 706, 727, 730, 733
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	121, 591
PsuI	RGATCY	3 cut(s)	277, 323, 619
RseI	CAYNNNNRTG	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	124
SatI	GCNGC	9 cut(s)	33, 77, 84, 147, 303, 705, 726, 729, 732
Sau3AI	GATC	5 cut(s)	42, 277, 323, 346, 619
Sau96I	GGNCC	2 cut(s)	121, 591
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	3 cut(s)	55, 406, 417
SexAI	ACCWGGT	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	3 cut(s)	186, 563, 658
SsiI	CCGC	4 cut(s)	83, 86, 284, 522
SspMI	CTAG	2 cut(s)	327, 746
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	180, 349
TasI	AATT	3 cut(s)	186, 563, 658
TauI	GCSGC	1 cut(s)	86
TscAI	CASTG	2 cut(s)	111, 363
TseI	GCWGC	8 cut(s)	32, 76, 146, 302, 704, 725, 728, 731
TspDTI	ATGAA	5 cut(s)	215, 307, 355, 393, 641
TspRI	CASTG	2 cut(s)	111, 363
VneI	GTGCAC	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	658
XspI	CTAG	2 cut(s)	327, 746
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.