Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0005151

Physical Location & Seq

Genomic Coordinates Forward (+)

167028 .. 170228

Gene Structure 3201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATTTGAAGGAAAAGAGGGTAGCGGCCACCATGATCGGAGGTGCTCGTGTTCGGCTGAACCGGTGGCAGCAGGCGGCGGTGGCAGTTGGGTCGGCAGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCAGCTCTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAATTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAGCCATACTGTTGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCCAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATGATCGACCACCAGTGCGTTTCATGGAAACAGATGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTGTTTGGCCTTCCAACAAACTTGATGGGTGAGTCAGCACTCAAAGTAATAGAGTTTCAGCAAATGTATCTTCCCATGTGCTTGATGTCCGTTATAGGAGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTCAAGCTGGTATGCAGTCAACAGATCTCATGTGTATTTATTATGAGAAACACTTTCATGAGAATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTGCTGCACCTAAACAAACCCAAGCAGCAGCAGCTTCACCTGGTCTAGTGGAGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coq4

Protein Analysis

251

Amino Acids

28.15

Weight (kDa)

9.39

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coq4	PF05019	17 - 232	3.4e-84	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03690
fragaria_vesca	FvH4_4g29830
malus_domestica	MD13G1060600.v1.1 MD16G1059800.v1.1
prunus_persica	Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1
pyrus_communis	pycom13g05400
rosa_chinensis	RchiOBHm_Chr4g0438081
rosa_laevigata	RLG00000001446 RLG00000001447 RLG00000006389
rosa_multiflora	Rmu_sc0004728.1_g000006 Rmu_sc0006047.1_g000002 Rmu_sc0027297.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271190 Rroxscaffold_5G00379220
rosa_rugosa	Rorug04G0306500 Rorug04G0306600 Rorug04G0306700 Rorug04G0306800
rosa_samantha	Rh4AG358300 Rh4BG369200 Rh4CG383300 Rh7BG050900 Rh7CG053000 Rh7DG051000
rosa_wichuraiana	Rw0G016230 Rw7G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	26, 77, 80, 278
AclWI	GGATC	2 cut(s)	279, 325
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	10, 541, 593
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	4 cut(s)	128, 143, 596, 728
AluI	AGCT	4 cut(s)	128, 143, 596, 728
Alw21I	GWGCWC	2 cut(s)	49, 411
Alw26I	GTCTC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	279, 325
AoxI	GGCC	3 cut(s)	27, 433, 585
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	7 cut(s)	70, 140, 296, 698, 719, 722, 725
ApoI	RAATTY	1 cut(s)	652
AsiGI	ACCGGT	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	115, 585
AsuHPI	GGTGA	2 cut(s)	467, 723
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	400
BauI	CACGAG	2 cut(s)	48, 399
Bbv12I	GWGCWC	2 cut(s)	49, 411
BbvI	GCAGC	7 cut(s)	82, 152, 283, 685, 731, 734, 737
BccI	CCATC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	735
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	2 cut(s)	321, 740
BglI	GCCNNNNNGGC	2 cut(s)	210, 395
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	9 cut(s)	27, 71, 78, 141, 297, 699, 720, 723, 726
BlsI	GCNGC	9 cut(s)	28, 72, 79, 142, 298, 700, 721, 724, 727
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 585
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	581
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 676, 706
Bse118I	RCCGGY	2 cut(s)	63, 166
Bse1I	ACTGG	2 cut(s)	163, 350
Bse3DI	GCAATG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	1 cut(s)	667
BseMI	GCAATG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	163, 350
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	7 cut(s)	82, 152, 283, 685, 731, 734, 737
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	3 cut(s)	29, 435, 587
BshTI	ACCGGT	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	49, 411
BsiSI	CCGG	2 cut(s)	64, 167
BsmAI	GTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	29, 435, 587
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	3 cut(s)	49, 400, 411
Bsp143I	GATC	5 cut(s)	36, 271, 317, 340, 613
BspACI	CCGC	4 cut(s)	26, 77, 80, 278
BspANI	GGCC	3 cut(s)	29, 435, 587
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	279, 325
BspQI	GCTCTTC	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	2 cut(s)	63, 166
BsrI	ACTGG	2 cut(s)	163, 350
BssAI	RCCGGY	2 cut(s)	63, 166
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	5 cut(s)	36, 271, 317, 340, 613
BssSI	CACGAG	2 cut(s)	48, 399
BssT1I	CCWWGG	1 cut(s)	581
Bst2BI	CACGAG	2 cut(s)	48, 399
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	2 cut(s)	118, 191
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	75, 168
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	5 cut(s)	39, 274, 320, 343, 616
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	5 cut(s)	36, 271, 317, 340, 613
BstMWI	GCNNNNNNNGC	9 cut(s)	83, 104, 210, 302, 386, 395, 593, 698, 725
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	733
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	7 cut(s)	82, 152, 283, 685, 731, 734, 737
BstX2I	RGATCY	3 cut(s)	271, 317, 613
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	3 cut(s)	271, 317, 613
BsuRI	GGCC	3 cut(s)	29, 435, 587
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 357
Cac8I	GCNNGC	2 cut(s)	75, 168
CciI	TCATGA	1 cut(s)	646
Cfr10I	RCCGGY	2 cut(s)	63, 166
Cfr13I	GGNCC	2 cut(s)	115, 585
CsiI	ACCWGGT	1 cut(s)	733
CspAI	ACCGGT	1 cut(s)	63
CviAII	CATG	9 cut(s)	34, 263, 267, 313, 361, 391, 502, 619, 647
DpnI	GATC	5 cut(s)	38, 273, 319, 342, 615
DpnII	GATC	5 cut(s)	36, 271, 317, 340, 613
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	118, 191
EarI	CTCTTC	2 cut(s)	118, 191
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	581
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	9 cut(s)	37, 266, 270, 316, 364, 394, 505, 622, 650
FatI	CATG	9 cut(s)	33, 262, 266, 312, 360, 390, 501, 618, 646
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	9 cut(s)	27, 71, 78, 141, 297, 699, 720, 723, 726
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	9 cut(s)	27, 71, 78, 141, 297, 699, 720, 723, 726
FspBI	CTAG	2 cut(s)	321, 740
GluI	GCNGC	9 cut(s)	27, 71, 78, 141, 297, 699, 720, 723, 726
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	29, 435, 587
HapII	CCGG	2 cut(s)	64, 167
Hin1II	CATG	9 cut(s)	37, 266, 270, 316, 364, 394, 505, 622, 650
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	2 cut(s)	64, 167
HphI	GGTGA	2 cut(s)	467, 723
Hpy166II	GTNNAC	2 cut(s)	409, 609
Hpy188I	TCNGA	3 cut(s)	41, 189, 669
Hpy188III	TCNNGA	3 cut(s)	335, 401, 647
Hpy8I	GTNNAC	2 cut(s)	409, 609
HpyAV	CCTTC	3 cut(s)	4, 203, 446
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	6 cut(s)	251, 266, 380, 409, 604, 701
HpyF10VI	GCNNNNNNNGC	9 cut(s)	83, 104, 210, 302, 386, 395, 593, 698, 725
Hsp92II	CATG	9 cut(s)	37, 266, 270, 316, 364, 394, 505, 622, 650
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	36, 271, 317, 340, 613
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	229, 697
Lsp1109I	GCAGC	7 cut(s)	82, 152, 283, 685, 731, 734, 737
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	2 cut(s)	321, 740
MalI	GATC	5 cut(s)	38, 273, 319, 342, 615
MboI	GATC	5 cut(s)	36, 271, 317, 340, 613
MboII	GAAGA	5 cut(s)	135, 208, 266, 488, 556
MflI	RGATCY	3 cut(s)	271, 317, 613
MhlI	GDGCHC	3 cut(s)	49, 400, 411
MluCI	AATT	3 cut(s)	180, 557, 652
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	207, 464
MnlI	CCTC	7 cut(s)	12, 35, 387, 397, 518, 528, 652
Mph1103I	ATGCAT	1 cut(s)	268
MroNI	GCCGGC	1 cut(s)	166
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	2 cut(s)	64, 167
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	9 cut(s)	83, 104, 210, 302, 386, 395, 593, 698, 725
NaeI	GCCGGC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	5 cut(s)	36, 271, 317, 340, 613
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	9 cut(s)	37, 266, 270, 316, 364, 394, 505, 622, 650
NlaIV	GGNNCC	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	174
PagI	TCATGA	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	63
PkrI	GCNGC	9 cut(s)	28, 72, 79, 142, 298, 700, 721, 724, 727
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	115, 585
PsuI	RGATCY	3 cut(s)	271, 317, 613
RseI	CAYNNNNRTG	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	118
SatI	GCNGC	9 cut(s)	27, 71, 78, 141, 297, 699, 720, 723, 726
Sau3AI	GATC	5 cut(s)	36, 271, 317, 340, 613
Sau96I	GGNCC	2 cut(s)	115, 585
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	3 cut(s)	49, 400, 411
SexAI	ACCWGGT	1 cut(s)	733
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	645
Sse9I	AATT	3 cut(s)	180, 557, 652
SsiI	CCGC	4 cut(s)	26, 77, 80, 278
SspMI	CTAG	2 cut(s)	321, 740
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	174, 343
TasI	AATT	3 cut(s)	180, 557, 652
TauI	GCSGC	2 cut(s)	29, 80
TscAI	CASTG	2 cut(s)	105, 357
TseI	GCWGC	7 cut(s)	70, 140, 296, 698, 719, 722, 725
TspDTI	ATGAA	5 cut(s)	209, 301, 349, 387, 635
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	2 cut(s)	105, 357
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	652
XspI	CTAG	2 cut(s)	321, 740
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.