FvH4_4g29830

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005151
Physical Location & Seq
Forward (+)
29784779 .. 29787012
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29830.t1

Sequence Viewer

Length: 909 bp
ATGCCTTTAAATTCTTTTTTCAAAAGCCCAAAGGAATCCAGTGATCAGCAATTTTCAGGACACAAAACCGGAATCGTAGAACAATCTTTAGAAATCGAAACCCAATTTTTCTTGGCACGAATTTTAGTAAACCATCAGGATCACGGACCCATTTGGAAAAGAGGGGCAGCTGGGATCATGATCGGAGGTGGGCGTGTACGGCTGAACCGGTGGCAGCAGGCGGCGGTGGCAGTTGGGTCGGCGGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCGGCTCTGGGGGAGACGACTGGGAAACCGGCATTCGAAAGAGTTCTTCAGAGAATGAAGAGTTGCCCTGAAGGCAGAGCCATACTGTTGGAGCAACCCCGTGTTATATCTGCAAATGTGGGTCATGCATGGGATCTTCCAGCAAATACATTTGGTGCTGCCTATGCAAAGTTCATGGGATCTAGGAACTTCTCTCCAGATGATCGACCACCAGTGCGTTTCATGGAAACAGATGAACTTGCATATGTGGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTTTTTGACCTTCCGACGAATTTGATGGGTGAGTCAGCACTCAAAGTAATTGAGTTTCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGTTGTAGGAGGCTCAGTGAGATTCAATGATAAGCAGAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTCGAGCTGGTATGCGGTCAACAGATCTCATGTGTATATACTATGAGAAACACTTCCATGAGGATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTGCTATTCCTAAACAAACCCAGGCATCAGCAGCCTCATCTGCTCCAGCAAAGAAACTGGAGATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

303

Amino Acids

33.97

Weight (kDa)

9.23

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coq4 PF05019 64 - 280 3.7e-83 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 221, 224, 242, 284, 748
AclWI GGATC 4 cut(s) 147, 182, 423, 469
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 3 cut(s) 10, 120, 589
AcuI CTGAAG 2 cut(s) 314, 372
AfaI GTAC 2 cut(s) 198, 638
AfiI CCNNNNNNNGG 1 cut(s) 283
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 22, 685
AjnI CCWGG 1 cut(s) 858
AluBI AGCT 3 cut(s) 170, 272, 740
AluI AGCT 3 cut(s) 170, 272, 740
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 290
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 4 cut(s) 147, 182, 423, 469
AoxI GGCC 2 cut(s) 531, 729
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 4 cut(s) 167, 214, 440, 869
ApoI RAATTY 3 cut(s) 10, 120, 589
AsiGI ACCGGT 1 cut(s) 207
Asp700I GAANNNNTTC 2 cut(s) 324, 785
AspS9I GGNCC 3 cut(s) 146, 259, 729
AsuHPI GGTGA 1 cut(s) 611
AsuII TTCGAA 1 cut(s) 318
AvaII GGWCC 2 cut(s) 146, 259
BaeGI GKGCMC 1 cut(s) 555
BalI TGGCCA 1 cut(s) 533
BanII GRGCYC 1 cut(s) 544
BauI CACGAG 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 4 cut(s) 179, 226, 427, 881
BccI CCATC 2 cut(s) 141, 589
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 860
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 465
BglI GCCNNNNNGGC 2 cut(s) 354, 539
BglII AGATCT 1 cut(s) 757
BisI GCNGC 6 cut(s) 168, 215, 222, 285, 441, 870
BlsI GCNGC 6 cut(s) 169, 216, 223, 286, 442, 871
Bme1390I CCNGG 1 cut(s) 860
Bme18I GGWCC 2 cut(s) 146, 259
BmgT120I GGNCC 3 cut(s) 146, 259, 729
BmiI GGNNCC 2 cut(s) 148, 261
BmrFI CCNGG 1 cut(s) 860
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 872
BmuI ACTGGG 1 cut(s) 312
BpmI CTGGAG 2 cut(s) 462, 867
Bpu14I TTCGAA 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 725, 858
BsaWI WCCGGW 2 cut(s) 68, 207
BsaXI ACNNNNNCTCC 4 cut(s) 660, 690, 820, 850
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 2 cut(s) 207, 310
Bse1I ACTGG 4 cut(s) 39, 307, 494, 900
Bse3DI GCAATG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 2 cut(s) 725, 858
BseGI GGATG 1 cut(s) 811
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 4 cut(s) 39, 307, 494, 900
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 4 cut(s) 179, 226, 427, 881
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 2 cut(s) 533, 731
BshTI ACCGGT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 3 cut(s) 69, 208, 311
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 2 cut(s) 533, 731
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 544, 555
Bsp143I GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
BspACI CCGC 5 cut(s) 221, 224, 242, 284, 748
BspANI GGCC 2 cut(s) 533, 731
BspCNI CTCAG 1 cut(s) 686
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 148, 261
BspPI GGATC 4 cut(s) 147, 182, 423, 469
BspQI GCTCTTC 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 207, 310
BsrI ACTGG 4 cut(s) 39, 307, 494, 900
BssAI RCCGGY 2 cut(s) 207, 310
BssECI CCNNGG 2 cut(s) 725, 858
BssMI GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 725
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 2 cut(s) 262, 335
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 673
BstF5I GGATG 1 cut(s) 811
BstKTI GATC 8 cut(s) 46, 142, 177, 183, 418, 464, 487, 760
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
BstNI CCWGG 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 858
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 179, 226, 427, 881
BstX2I RGATCY 3 cut(s) 415, 461, 757
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 3 cut(s) 415, 461, 757
BsuRI GGCC 2 cut(s) 533, 731
BtsCI GGATG 1 cut(s) 811
BtsIMutI CAGTG 3 cut(s) 46, 501, 681
Cac8I GCNNGC 1 cut(s) 219
CciI TCATGA 1 cut(s) 177
Cfr10I RCCGGY 2 cut(s) 207, 310
Cfr13I GGNCC 3 cut(s) 146, 259, 729
Csp6I GTAC 2 cut(s) 197, 637
CspAI ACCGGT 1 cut(s) 207
CviAII CATG 9 cut(s) 178, 407, 411, 457, 505, 535, 646, 763, 791
CviQI GTAC 2 cut(s) 197, 637
DdeI CTNAG 1 cut(s) 673
DpnI GATC 8 cut(s) 45, 141, 176, 182, 417, 463, 486, 759
DpnII GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 2 cut(s) 262, 335
EarI CTCTTC 2 cut(s) 262, 335
Eco130I CCWWGG 1 cut(s) 725
Eco24I GRGCYC 1 cut(s) 544
Eco47I GGWCC 2 cut(s) 146, 259
Eco57I CTGAAG 2 cut(s) 314, 372
EcoRII CCWGG 1 cut(s) 858
EcoT14I CCWWGG 1 cut(s) 725
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 725
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 9 cut(s) 181, 410, 414, 460, 508, 538, 649, 766, 794
FatI CATG 9 cut(s) 177, 406, 410, 456, 504, 534, 645, 762, 790
FauNDI CATATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 6 cut(s) 168, 215, 222, 285, 441, 870
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 6 cut(s) 168, 215, 222, 285, 441, 870
FspBI CTAG 1 cut(s) 465
GluI GCNGC 6 cut(s) 168, 215, 222, 285, 441, 870
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 2 cut(s) 462, 867
HaeIII GGCC 2 cut(s) 533, 731
HapII CCGG 3 cut(s) 69, 208, 311
Hin1II CATG 9 cut(s) 181, 410, 414, 460, 508, 538, 649, 766, 794
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 4 cut(s) 35, 72, 602, 681
HpaII CCGG 3 cut(s) 69, 208, 311
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 4 cut(s) 130, 197, 553, 753
Hpy188I TCNGA 4 cut(s) 185, 333, 585, 813
Hpy188III TCNNGA 6 cut(s) 57, 137, 178, 479, 545, 906
Hpy8I GTNNAC 4 cut(s) 130, 197, 553, 753
Hpy99I CGWCG 1 cut(s) 589
HpyAV CCTTC 3 cut(s) 347, 590, 650
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 395, 410, 449, 524, 553
HpyF3I CTNAG 1 cut(s) 673
Hsp92II CATG 9 cut(s) 181, 410, 414, 460, 508, 538, 649, 766, 794
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 3 cut(s) 373, 841, 886
Lsp1109I GCAGC 4 cut(s) 179, 226, 427, 881
LweI GCATC 1 cut(s) 872
MaeI CTAG 1 cut(s) 465
MalI GATC 8 cut(s) 45, 141, 176, 182, 417, 463, 486, 759
MboI GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
MboII GAAGA 5 cut(s) 279, 320, 352, 410, 700
MflI RGATCY 3 cut(s) 415, 461, 757
MhlI GDGCHC 2 cut(s) 544, 555
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 7 cut(s) 10, 50, 104, 120, 589, 618, 701
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 2 cut(s) 351, 608
MnlI CCTC 8 cut(s) 155, 179, 531, 541, 662, 787, 796, 883
Mox20I TGGCCA 1 cut(s) 533
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 2 cut(s) 324, 785
MscI TGGCCA 1 cut(s) 533
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 789
Msp20I TGGCCA 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 3 cut(s) 69, 208, 311
MspR9I CCNGG 1 cut(s) 860
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 860
NdeI CATATG 1 cut(s) 526
NdeII GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
NlaIII CATG 9 cut(s) 181, 410, 414, 460, 508, 538, 649, 766, 794
NlaIV GGNNCC 2 cut(s) 148, 261
NsiI ATGCAT 1 cut(s) 412
NspV TTCGAA 1 cut(s) 318
PagI TCATGA 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 262
PctI GAATGC 1 cut(s) 314
PdmI GAANNNNTTC 2 cut(s) 324, 785
PfeI GAWTC 3 cut(s) 35, 72, 681
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 6 cut(s) 169, 216, 223, 286, 442, 871
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 858
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 2 cut(s) 148, 261
PspPI GGNCC 3 cut(s) 146, 259, 729
PsuI RGATCY 3 cut(s) 415, 461, 757
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 198, 638
RsaNI GTAC 2 cut(s) 197, 637
RseI CAYNNNNRTG 1 cut(s) 789
SapI GCTCTTC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 6 cut(s) 168, 215, 222, 285, 441, 870
Sau3AI GATC 8 cut(s) 43, 139, 174, 180, 415, 461, 484, 757
Sau96I GGNCC 3 cut(s) 146, 259, 729
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 860
SduI GDGCHC 2 cut(s) 544, 555
SetI ASST 8 cut(s) 172, 190, 274, 279, 552, 582, 642, 742
SfaNI GCATC 1 cut(s) 872
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 2 cut(s) 146, 259
SmiMI CAYNNNNRTG 1 cut(s) 789
Sse9I AATT 7 cut(s) 10, 50, 104, 120, 589, 618, 701
SsiI CCGC 5 cut(s) 221, 224, 242, 284, 748
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 858
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 96, 318, 487, 736
TasI AATT 7 cut(s) 10, 50, 104, 120, 589, 618, 701
TauI GCSGC 2 cut(s) 224, 287
TfiI GAWTC 3 cut(s) 35, 72, 681
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 3 cut(s) 46, 501, 681
TseI GCWGC 4 cut(s) 167, 214, 440, 869
TspDTI ATGAA 4 cut(s) 353, 445, 493, 531
TspGWI ACGGA 2 cut(s) 159, 649
TspRI CASTG 3 cut(s) 46, 501, 681
VneI GTGCAC 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 146, 259
XapI RAATTY 3 cut(s) 10, 120, 589
XmnI GAANNNNTTC 2 cut(s) 324, 785
XspI CTAG 1 cut(s) 465
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.