RLG00000001447

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005151
Physical Location & Seq
Forward (+)
15702815 .. 15704178
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001447

Sequence Viewer

Length: 678 bp
ATGATCGGAGGTGCTCGCGTTCGGCTGAACCGGTGGCAGCAGGCGGCTGTGGCAGTTGGGTCGGCAGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCAGCTCTGGGGGAGACAACTGGGAAGCCGGCATTTGAAAGAGTTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAGTCATACTGTTGAAGCAACCCCGTGTAATATCTACAAATGTGGGTCATGCATGGGATCTTCCGACGAACACATTTGGTGCTGCTTATGCAAAGTTCATGGGATCTAGGAACTTCTCTCCAGATGATCGACCACCAGTGCGTTTCATGGAAACAGATGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACATCCTGTTTGACCTTCCAACAAACTTGATGGGTGAGTCAGCACTCAAAGTAATAGAGTTTCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGCTATAGGAGGCTCTTTGAGGTTCAACGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCCTTAGAGCTGGTACGCAGTCAACATATCTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTGCAGCTCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

226

Amino Acids

25.61

Weight (kDa)

9.54

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coq4 PF05019 6 - 221 7.4e-84 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AciI CCGC 2 cut(s) 44, 483
AclWI GGATC 2 cut(s) 246, 292
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 2 cut(s) 461, 568
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 3 cut(s) 143, 196, 508
AluBI AGCT 4 cut(s) 95, 110, 563, 668
AluI AGCT 4 cut(s) 95, 110, 563, 668
Alw21I GWGCWC 2 cut(s) 16, 378
Alw26I GTCTC 1 cut(s) 113
Alw44I GTGCAC 1 cut(s) 374
AlwI GGATC 2 cut(s) 246, 292
AoxI GGCC 1 cut(s) 552
ApaI GGGCCC 1 cut(s) 556
ApaLI GTGCAC 1 cut(s) 374
ApeKI GCWGC 4 cut(s) 37, 107, 263, 665
AsiGI ACCGGT 1 cut(s) 30
AspS9I GGNCC 3 cut(s) 82, 552, 553
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 2 cut(s) 378, 556
BanII GRGCYC 2 cut(s) 367, 556
BauI CACGAG 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 16, 378
BbvI GCAGC 3 cut(s) 49, 119, 250
BccI CCATC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 486, 663
BglI GCCNNNNNGGC 2 cut(s) 177, 362
BisI GCNGC 5 cut(s) 38, 45, 108, 264, 666
BlsI GCNGC 5 cut(s) 39, 46, 109, 265, 667
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 82, 552, 553
BmiI GGNNCC 2 cut(s) 84, 554
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bse118I RCCGGY 2 cut(s) 30, 133
Bse1I ACTGG 2 cut(s) 130, 317
Bse3DI GCAATG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 2 cut(s) 390, 634
BseMI GCAATG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 130, 317
BseSI GKGCMC 2 cut(s) 378, 556
BseXI GCAGC 3 cut(s) 49, 119, 250
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 554
BshTI ACCGGT 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 16, 378
BsiSI CCGG 2 cut(s) 31, 134
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 554
Bsp120I GGGCCC 1 cut(s) 552
Bsp1286I GDGCHC 4 cut(s) 16, 367, 378, 556
Bsp143I GATC 4 cut(s) 3, 238, 284, 307
BspACI CCGC 2 cut(s) 44, 483
BspANI GGCC 1 cut(s) 554
BspFNI CGCG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 2 cut(s) 84, 554
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 2 cut(s) 246, 292
BspQI GCTCTTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 74
BsrFI RCCGGY 2 cut(s) 30, 133
BsrI ACTGG 2 cut(s) 130, 317
BssAI RCCGGY 2 cut(s) 30, 133
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 4 cut(s) 3, 238, 284, 307
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 85, 158
BstC8I GCNNGC 3 cut(s) 16, 42, 135
BstDEI CTNAG 1 cut(s) 557
BstF5I GGATG 2 cut(s) 390, 634
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 4 cut(s) 6, 241, 287, 310
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 4 cut(s) 3, 238, 284, 307
BstMWI GCNNNNNNNGC 8 cut(s) 50, 71, 177, 269, 353, 362, 560, 665
BstSFI CTRYAG 2 cut(s) 486, 663
BstSLI GKGCMC 2 cut(s) 378, 556
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 49, 119, 250
BstX2I RGATCY 2 cut(s) 238, 284
BstYI RGATCY 2 cut(s) 238, 284
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 2 cut(s) 390, 634
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 324
Cac8I GCNNGC 3 cut(s) 16, 42, 135
CciI TCATGA 1 cut(s) 613
Cfr10I RCCGGY 2 cut(s) 30, 133
Cfr13I GGNCC 3 cut(s) 82, 552, 553
Csp6I GTAC 2 cut(s) 460, 567
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 8 cut(s) 230, 234, 280, 328, 358, 469, 586, 614
CviQI GTAC 2 cut(s) 460, 567
DdeI CTNAG 1 cut(s) 557
DpnI GATC 4 cut(s) 5, 240, 286, 309
DpnII GATC 4 cut(s) 3, 238, 284, 307
Eam1104I CTCTTC 2 cut(s) 85, 158
EarI CTCTTC 2 cut(s) 85, 158
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 2 cut(s) 367, 556
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 367, 556
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 8 cut(s) 233, 237, 283, 331, 361, 472, 589, 617
FatI CATG 8 cut(s) 229, 233, 279, 327, 357, 468, 585, 613
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 5 cut(s) 38, 45, 108, 264, 666
FokI GGATG 2 cut(s) 377, 641
FriOI GRGCYC 2 cut(s) 367, 556
Fsp4HI GCNGC 5 cut(s) 38, 45, 108, 264, 666
FspBI CTAG 1 cut(s) 288
GluI GCNGC 5 cut(s) 38, 45, 108, 264, 666
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 554
HapII CCGG 2 cut(s) 31, 134
Hin1II CATG 8 cut(s) 233, 237, 283, 331, 361, 472, 589, 617
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 2 cut(s) 183, 425
HpaII CCGG 2 cut(s) 31, 134
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 376, 576
Hpy188I TCNGA 4 cut(s) 8, 156, 246, 636
Hpy188III TCNNGA 3 cut(s) 302, 368, 614
Hpy8I GTNNAC 2 cut(s) 376, 576
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 170, 413, 473
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 5 cut(s) 233, 272, 347, 376, 665
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 71, 177, 269, 353, 362, 560, 665
HpyF3I CTNAG 1 cut(s) 557
Hsp92II CATG 8 cut(s) 233, 237, 283, 331, 361, 472, 589, 617
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 4 cut(s) 3, 238, 284, 307
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 664, 673
Lsp1109I GCAGC 3 cut(s) 49, 119, 250
MaeI CTAG 1 cut(s) 288
MalI GATC 4 cut(s) 5, 240, 286, 309
MboI GATC 4 cut(s) 3, 238, 284, 307
MboII GAAGA 4 cut(s) 102, 175, 233, 523
MflI RGATCY 2 cut(s) 238, 284
MhlI GDGCHC 4 cut(s) 16, 367, 378, 556
MluCI AATT 1 cut(s) 524
MlyI GAGTC 2 cut(s) 192, 434
MmeI TCCRAC 2 cut(s) 269, 431
MnlI CCTC 6 cut(s) 354, 364, 485, 495, 610, 619
Mph1103I ATGCAT 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 133
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 2 cut(s) 31, 134
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 8 cut(s) 50, 71, 177, 269, 353, 362, 560, 665
NaeI GCCGGC 1 cut(s) 135
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 3, 238, 284, 307
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 8 cut(s) 233, 237, 283, 331, 361, 472, 589, 617
NlaIV GGNNCC 2 cut(s) 84, 554
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 135
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 5 cut(s) 39, 46, 109, 265, 667
PleI GAGTC 2 cut(s) 191, 433
PpsI GAGTC 2 cut(s) 191, 433
PspN4I GGNNCC 2 cut(s) 84, 554
PspOMI GGGCCC 1 cut(s) 552
PspPI GGNCC 3 cut(s) 82, 552, 553
PstI CTGCAG 1 cut(s) 667
PsuI RGATCY 2 cut(s) 238, 284
RsaI GTAC 2 cut(s) 461, 568
RsaNI GTAC 2 cut(s) 460, 567
RseI CAYNNNNRTG 1 cut(s) 612
SapI GCTCTTC 1 cut(s) 85
SatI GCNGC 5 cut(s) 38, 45, 108, 264, 666
Sau3AI GATC 4 cut(s) 3, 238, 284, 307
Sau96I GGNCC 3 cut(s) 82, 552, 553
SchI GAGTC 2 cut(s) 192, 434
SduI GDGCHC 4 cut(s) 16, 367, 378, 556
SfcI CTRYAG 2 cut(s) 486, 663
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 612
Sse9I AATT 1 cut(s) 524
SsiI CCGC 2 cut(s) 44, 483
SspMI CTAG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 310
TasI AATT 1 cut(s) 524
TauI GCSGC 1 cut(s) 47
TscAI CASTG 2 cut(s) 72, 324
TseI GCWGC 4 cut(s) 37, 107, 263, 665
TspDTI ATGAA 5 cut(s) 176, 268, 316, 354, 602
TspRI CASTG 2 cut(s) 72, 324
VneI GTGCAC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 82
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.