Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005151

Physical Location & Seq

Genomic Coordinates Forward (+)

59668397 .. 59672047

Gene Structure 3651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTCGAGTCCATTGTTAGAGTAGCTGAAATCTACTGCTTTTCAAGGGATTTGAAGGAAAAGAGGGTAGCAGCCACCATGATCGGAGGTGCTCGTGTTCGGCTGAACCGGTGGCAGCAGGCGGCGGTGGCAGTTGGGTCGGCGGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCTGCTCTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAATTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAACCAATGGACATCCTTCTTTACAGGCCATTCTGTTGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATGATCGACCACCAGTGCGTTTCATGGAAACAGATGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTGTTTGACCTTCCAACAAACTTGATGGGTGAGTCAGCGCTCAAAGTAATAGAGTTTCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGTTATAGGAGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTCGAGCTGGTATGCAGTCAACAGATCTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTAAACAAACCAAGCAGCAGCAGCTTCATTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coq4

Protein Analysis

266

Amino Acids

30.34

Weight (kDa)

9.27

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coq4	PF05019	32 - 255	3.5e-80	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03690
fragaria_vesca	FvH4_4g29830
malus_domestica	MD13G1060600.v1.1 MD16G1059800.v1.1
prunus_persica	Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1
pyrus_communis	pycom13g05400
rosa_chinensis	RchiOBHm_Chr4g0438081
rosa_laevigata	RLG00000001446 RLG00000001447 RLG00000006389
rosa_multiflora	Rmu_sc0004728.1_g000006 Rmu_sc0006047.1_g000002 Rmu_sc0027297.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271190 Rroxscaffold_5G00379220
rosa_rugosa	Rorug04G0306500 Rorug04G0306600 Rorug04G0306700 Rorug04G0306800
rosa_samantha	Rh4AG358300 Rh4BG369200 Rh4CG383300 Rh7BG050900 Rh7CG053000 Rh7DG051000
rosa_wichuraiana	Rw0G016230 Rw7G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	122, 125, 143, 347
AclWI	GGATC	2 cut(s)	348, 394
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	563
AfeI	AGCGCT	1 cut(s)	534
AgeI	ACCGGT	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	45, 55, 610
AluBI	AGCT	5 cut(s)	26, 173, 185, 665, 787
AluI	AGCT	5 cut(s)	26, 173, 185, 665, 787
Alw21I	GWGCWC	2 cut(s)	94, 480
Alw26I	GTCTC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	348, 394
Aor51HI	AGCGCT	1 cut(s)	534
AoxI	GGCC	2 cut(s)	285, 654
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	7 cut(s)	71, 115, 185, 365, 778, 781, 784
AsiGI	ACCGGT	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	160, 654
AsuHPI	GGTGA	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	469
BauI	CACGAG	2 cut(s)	93, 468
Bbv12I	GWGCWC	2 cut(s)	94, 480
BbvI	GCAGC	7 cut(s)	83, 127, 172, 352, 790, 793, 796
BccI	CCATC	1 cut(s)	514
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	390, 799
BfoI	RGCGCY	1 cut(s)	536
BglI	GCCNNNNNGGC	2 cut(s)	255, 464
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	8 cut(s)	72, 116, 123, 186, 366, 779, 782, 785
BlsI	GCNGC	8 cut(s)	73, 117, 124, 187, 367, 780, 783, 786
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 654
BmiI	GGNNCC	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	650
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	4 cut(s)	585, 615, 745, 775
Bse118I	RCCGGY	2 cut(s)	108, 211
Bse1I	ACTGG	2 cut(s)	208, 419
Bse3DI	GCAATG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	650
BseGI	GGATG	2 cut(s)	271, 736
BseMI	GCAATG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	208, 419
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	7 cut(s)	83, 127, 172, 352, 790, 793, 796
BshFI	GGCC	2 cut(s)	287, 656
BshTI	ACCGGT	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	94, 480
BsiSI	CCGG	2 cut(s)	109, 212
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	287, 656
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	3 cut(s)	94, 469, 480
Bsp143I	GATC	5 cut(s)	81, 340, 386, 409, 682
BspACI	CCGC	4 cut(s)	122, 125, 143, 347
BspANI	GGCC	2 cut(s)	287, 656
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	348, 394
BspQI	GCTCTTC	1 cut(s)	163
BspT104I	TTCGAA	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	108, 211
BsrI	ACTGG	2 cut(s)	208, 419
BssAI	RCCGGY	2 cut(s)	108, 211
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	5 cut(s)	81, 340, 386, 409, 682
BssSI	CACGAG	2 cut(s)	93, 468
BssT1I	CCWWGG	1 cut(s)	650
Bst2BI	CACGAG	2 cut(s)	93, 468
Bst6I	CTCTTC	2 cut(s)	163, 236
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	120, 213
BstF5I	GGATG	2 cut(s)	271, 736
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	5 cut(s)	84, 343, 389, 412, 685
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	5 cut(s)	81, 340, 386, 409, 682
BstMWI	GCNNNNNNNGC	8 cut(s)	128, 149, 255, 371, 455, 464, 662, 784
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	7 cut(s)	83, 127, 172, 352, 790, 793, 796
BstX2I	RGATCY	3 cut(s)	340, 386, 682
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	3 cut(s)	340, 386, 682
BsuRI	GGCC	2 cut(s)	287, 656
BtsCI	GGATG	2 cut(s)	271, 736
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	120, 213
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	2 cut(s)	108, 211
Cfr13I	GGNCC	2 cut(s)	160, 654
Csp6I	GTAC	1 cut(s)	562
CspAI	ACCGGT	1 cut(s)	108
CviAII	CATG	9 cut(s)	79, 332, 336, 382, 430, 460, 571, 688, 716
CviQI	GTAC	1 cut(s)	562
DpnI	GATC	5 cut(s)	83, 342, 388, 411, 684
DpnII	GATC	5 cut(s)	81, 340, 386, 409, 682
Eam1104I	CTCTTC	2 cut(s)	163, 236
EarI	CTCTTC	2 cut(s)	163, 236
EciI	GGCGGA	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	160
Eco47III	AGCGCT	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	650
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	9 cut(s)	82, 335, 339, 385, 433, 463, 574, 691, 719
FatI	CATG	9 cut(s)	78, 331, 335, 381, 429, 459, 570, 687, 715
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	8 cut(s)	72, 116, 123, 186, 366, 779, 782, 785
FokI	GGATG	2 cut(s)	258, 743
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	8 cut(s)	72, 116, 123, 186, 366, 779, 782, 785
FspBI	CTAG	2 cut(s)	390, 799
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	8 cut(s)	72, 116, 123, 186, 366, 779, 782, 785
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	287, 656
HapII	CCGG	2 cut(s)	109, 212
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	9 cut(s)	82, 335, 339, 385, 433, 463, 574, 691, 719
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HinfI	GANTC	2 cut(s)	8, 527
HpaII	CCGG	2 cut(s)	109, 212
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	2 cut(s)	478, 678
Hpy188I	TCNGA	3 cut(s)	86, 234, 738
Hpy188III	TCNNGA	3 cut(s)	404, 470, 716
Hpy8I	GTNNAC	2 cut(s)	478, 678
HpyAV	CCTTC	5 cut(s)	49, 248, 285, 515, 575
HpyCH4V	TGCA	5 cut(s)	320, 335, 449, 478, 673
HpyF10VI	GCNNNNNNNGC	8 cut(s)	128, 149, 255, 371, 455, 464, 662, 784
Hsp92II	CATG	9 cut(s)	82, 335, 339, 385, 433, 463, 574, 691, 719
HspAI	GCGC	1 cut(s)	533
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	81, 340, 386, 409, 682
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	298, 766
Lsp1109I	GCAGC	7 cut(s)	83, 127, 172, 352, 790, 793, 796
MaeI	CTAG	2 cut(s)	390, 799
MalI	GATC	5 cut(s)	83, 342, 388, 411, 684
MboI	GATC	5 cut(s)	81, 340, 386, 409, 682
MboII	GAAGA	4 cut(s)	180, 253, 335, 625
MflI	RGATCY	3 cut(s)	340, 386, 682
MhlI	GDGCHC	3 cut(s)	94, 469, 480
MluCI	AATT	2 cut(s)	225, 626
MlyI	GAGTC	2 cut(s)	17, 536
MmeI	TCCRAC	2 cut(s)	276, 533
MnlI	CCTC	8 cut(s)	57, 80, 456, 466, 587, 597, 712, 721
Mph1103I	ATGCAT	1 cut(s)	337
MroNI	GCCGGC	1 cut(s)	211
MslI	CAYNNNNRTG	1 cut(s)	714
MspI	CCGG	2 cut(s)	109, 212
Mva1269I	GAATGC	1 cut(s)	215
MwoI	GCNNNNNNNGC	8 cut(s)	128, 149, 255, 371, 455, 464, 662, 784
NaeI	GCCGGC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	5 cut(s)	81, 340, 386, 409, 682
NgoMIV	GCCGGC	1 cut(s)	211
NlaIII	CATG	9 cut(s)	82, 335, 339, 385, 433, 463, 574, 691, 719
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	219
PagI	TCATGA	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	8 cut(s)	73, 117, 124, 187, 367, 780, 783, 786
PleI	GAGTC	2 cut(s)	16, 535
PpsI	GAGTC	2 cut(s)	16, 535
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	160, 654
PsuI	RGATCY	3 cut(s)	340, 386, 682
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	1 cut(s)	714
SapI	GCTCTTC	1 cut(s)	163
SatI	GCNGC	8 cut(s)	72, 116, 123, 186, 366, 779, 782, 785
Sau3AI	GATC	5 cut(s)	81, 340, 386, 409, 682
Sau96I	GGNCC	2 cut(s)	160, 654
SchI	GAGTC	2 cut(s)	17, 536
SduI	GDGCHC	3 cut(s)	94, 469, 480
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	714
Sse9I	AATT	2 cut(s)	225, 626
SsiI	CCGC	4 cut(s)	122, 125, 143, 347
SspMI	CTAG	2 cut(s)	390, 799
StyI	CCWWGG	1 cut(s)	650
TaqI	TCGA	4 cut(s)	6, 219, 412, 661
TasI	AATT	2 cut(s)	225, 626
TauI	GCSGC	1 cut(s)	125
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	7 cut(s)	71, 115, 185, 365, 778, 781, 784
TspDTI	ATGAA	6 cut(s)	254, 370, 418, 456, 704, 779
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	1 cut(s)	426
VneI	GTGCAC	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	160
XspI	CTAG	2 cut(s)	390, 799
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.