Rorug04G0306800

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005151
Physical Location & Seq
Forward (+)
48295480 .. 48297813
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0306800.1

Sequence Viewer

Length: 999 bp
ATGGAGAGAAGAGGATCCCGATCCAACGGAATGTTGCCGCTGCTCGCACTCCACGCCGCCAGCGAGTATTACAGGCTCGACAGGAAGCCTCCCGTCACCGCCGCACTCATTGCCGCCAATTCCCTCGTCTACTTACGCCCCGCCTTCCTCGAACCCATTCTCCCTTCCATTCACGACGTCTGGTTCAACCCTCACCTCATCCTCAAGAATAAGGACTTGAAGCGGTTCTTGCTGTCACCGTTTTACCATGTGGGAGAGTCTCATCTGGCTTACAACATGCTCTCGCTTTTATGGAAGGGCATCAAGTTGGAGTCCTCCATGGATAGTGCTGAGTTTGCATCCATGGTTGCTGTGCTACTCGGTATGTCCCAAGGGATCACACTGCTGCTTTCGAAAGCGCTGCTGGTTTTGTTTGACTATGAGAAGGCTTATTATTCGGAATACGCTGTTGGGTTTTCTGGGGTGATATTTGCAATGAAGGTGGTTCTCAATTCGCAGTCCGGAAACTATAGTTCTGTACATGGAATTCCGATGCCGTCGCGTTATGCTGCTTGGGTGGAGTTGGTTCTTATCCAGATGTTGGTGCCTGGCGTGTCTTTCATTGGTCATTTGGGTGGGATACTTGCCGGGTTTCTGTATCTCCGATTGAGGAGTGCATATTCGGGCTCAGACCCACTTACTTTAGTTCTCAGAGGTGTTAATAATGTACTAGAATTGCCTATGCGGTTTTTAAGAAGAGTGTTTCCATTCAGACGGAGGCAGGTATCTGGTAGAGGACCGGTTGGTGGGAGTCGTAGAGGAATAGCCATGGCGGATTGGAGGTGCAGTGCTTGTACATATGAAAACTCTGGTTGGTTGGATGCATGTGAAATGTGTGGCACAAATAGGAATGACAATGGCAATGGCAATTCCATGGCGTCGCATCCTTTGCCACAATATTCAGGTGACCTTACTTTGGAAGAATTAAGGCGGCTAAGGTTGGAAAGATTTGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

332

Amino Acids

37.1

Weight (kDa)

9.59

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 72 - 216 1.1e-21 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 580
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 500
AclWI GGATC 4 cut(s) 9, 15, 22, 383
AcsI RAATTY 1 cut(s) 525
AcyI GRCGYC 2 cut(s) 177, 917
AfaI GTAC 3 cut(s) 519, 708, 835
AfeI AGCGCT 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 580, 785, 955
AgeI ACCGGT 1 cut(s) 778
AgsI TTSAA 2 cut(s) 187, 220
AjnI CCWGG 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 4 cut(s) 9, 15, 22, 383
Aor13HI TCCGGA 1 cut(s) 500
Aor51HI AGCGCT 1 cut(s) 399
ApeKI GCWGC 4 cut(s) 40, 385, 400, 548
ApoI RAATTY 1 cut(s) 525
AsiGI ACCGGT 1 cut(s) 778
Asp700I GAANNNNTTC 2 cut(s) 156, 224
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 5 cut(s) 88, 185, 228, 475, 956
AsuII TTCGAA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 776
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 668
BbvI GCAGC 4 cut(s) 27, 372, 387, 535
BceAI ACGGC 1 cut(s) 520
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 588
BciVI GTATCC 1 cut(s) 612
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 751
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
BlsI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 972
Bme1390I CCNGG 2 cut(s) 588, 628
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 16, 585
BmrFI CCNGG 2 cut(s) 588, 628
BmsI GCATC 5 cut(s) 309, 347, 522, 850, 931
Bpu10I CCTNAGC 1 cut(s) 974
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 628
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 177, 917
BsaJI CCNNGG 5 cut(s) 318, 342, 370, 807, 912
BsaWI WCCGGW 2 cut(s) 500, 778
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 811, 841
Bsc4I CCNNNNNNNGG 3 cut(s) 580, 785, 955
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 3 cut(s) 108, 480, 907
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 5 cut(s) 318, 342, 370, 807, 912
BseGI GGATG 4 cut(s) 198, 338, 865, 922
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 580, 785, 955
BseMI GCAATG 3 cut(s) 108, 480, 907
BseMII CTCAG 3 cut(s) 321, 681, 703
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 4 cut(s) 27, 372, 387, 535
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 541
BshNI GGYRCC 1 cut(s) 583
BshTI ACCGGT 1 cut(s) 778
BsiSI CCGG 3 cut(s) 501, 627, 779
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 580, 785, 955
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 668
Bsp13I TCCGGA 1 cut(s) 500
Bsp1407I TGTACA 2 cut(s) 517, 833
Bsp143I GATC 3 cut(s) 14, 20, 375
Bsp19I CCATGG 4 cut(s) 318, 342, 807, 912
BspCNI CTCAG 3 cut(s) 322, 680, 702
BspEI TCCGGA 1 cut(s) 500
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 16, 585
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 4 cut(s) 9, 15, 22, 383
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 583
BsrDI GCAATG 3 cut(s) 108, 480, 907
BsrFI RCCGGY 1 cut(s) 778
BsrGI TGTACA 2 cut(s) 517, 833
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 5 cut(s) 318, 342, 370, 807, 912
BssMI GATC 3 cut(s) 14, 20, 375
BssNI GRCGYC 2 cut(s) 177, 917
BssT1I CCWWGG 5 cut(s) 318, 342, 370, 807, 912
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 4, 730
BstACI GRCGYC 2 cut(s) 177, 917
BstAPI GCANNNNNTGC 2 cut(s) 110, 928
BstAUI TGTACA 2 cut(s) 517, 833
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 45, 61
BstDEI CTNAG 4 cut(s) 330, 667, 689, 974
BstDSI CCRYGG 4 cut(s) 318, 342, 807, 912
BstEII GGTNACC 1 cut(s) 944
BstF5I GGATG 4 cut(s) 198, 338, 865, 922
BstFNI CGCG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 3 cut(s) 17, 23, 378
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 3 cut(s) 14, 20, 375
BstMWI GCNNNNNNNGC 5 cut(s) 53, 110, 229, 335, 928
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 2 cut(s) 280, 867
BstPI GGTNACC 1 cut(s) 944
BstSCI CCNGG 2 cut(s) 586, 626
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 27, 372, 387, 535
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuI GTATCC 1 cut(s) 612
BtgI CCRYGG 4 cut(s) 318, 342, 807, 912
BtsCI GGATG 4 cut(s) 198, 338, 865, 922
BtsI GCAGTG 2 cut(s) 380, 832
BtsIMutI CAGTG 2 cut(s) 380, 832
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 2 cut(s) 45, 61
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 776
CseI GACGC 1 cut(s) 906
Csp6I GTAC 3 cut(s) 518, 707, 834
CspAI ACCGGT 1 cut(s) 778
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 8 cut(s) 248, 277, 319, 343, 521, 808, 864, 913
CviJI RGCY 7 cut(s) 76, 88, 269, 428, 666, 806, 973
CviKI_1 RGCY 7 cut(s) 76, 88, 269, 428, 666, 806, 973
CviQI GTAC 3 cut(s) 518, 707, 834
DdeI CTNAG 4 cut(s) 330, 667, 689, 974
DpnI GATC 3 cut(s) 16, 22, 377
DpnII GATC 3 cut(s) 14, 20, 375
Eam1104I CTCTTC 2 cut(s) 4, 730
EarI CTCTTC 2 cut(s) 4, 730
EciI GGCGGA 1 cut(s) 827
Eco130I CCWWGG 5 cut(s) 318, 342, 370, 807, 912
Eco24I GRGCYC 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 776
Eco47III AGCGCT 1 cut(s) 399
Eco91I GGTNACC 1 cut(s) 944
EcoO65I GGTNACC 1 cut(s) 944
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 5 cut(s) 318, 342, 370, 807, 912
EcoT22I ATGCAT 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 668
ErhI CCWWGG 5 cut(s) 318, 342, 370, 807, 912
FaeI CATG 8 cut(s) 251, 280, 322, 346, 524, 811, 867, 916
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 352
FatI CATG 8 cut(s) 247, 276, 318, 342, 520, 807, 863, 912
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 838
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
FokI GGATG 4 cut(s) 185, 325, 872, 909
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 399
GluI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
HaeII RGCGCY 1 cut(s) 401
HapII CCGG 3 cut(s) 501, 627, 779
HgaI GACGC 1 cut(s) 906
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 2 cut(s) 177, 917
Hin1II CATG 8 cut(s) 251, 280, 322, 346, 524, 811, 867, 916
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 3 cut(s) 257, 311, 790
HpaII CCGG 3 cut(s) 501, 627, 779
HphI GGTGA 5 cut(s) 88, 185, 228, 475, 956
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 6 cut(s) 439, 531, 644, 670, 692, 752
Hpy188III TCNNGA 5 cut(s) 18, 173, 205, 501, 574
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 3 cut(s) 179, 541, 922
HpyAV CCTTC 5 cut(s) 154, 174, 289, 418, 472
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 338, 473, 656, 825, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 110, 229, 335, 928
HpyF3I CTNAG 4 cut(s) 330, 667, 689, 974
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 2 cut(s) 177, 917
Hsp92II CATG 8 cut(s) 251, 280, 322, 346, 524, 811, 867, 916
HspAI GCGC 1 cut(s) 398
Kpn2I TCCGGA 1 cut(s) 500
Kzo9I GATC 3 cut(s) 14, 20, 375
Lsp1109I GCAGC 4 cut(s) 27, 372, 387, 535
LweI GCATC 5 cut(s) 309, 347, 522, 850, 931
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 3 cut(s) 94, 234, 944
MalI GATC 3 cut(s) 16, 22, 377
MboI GATC 3 cut(s) 14, 20, 375
MboII GAAGA 3 cut(s) 21, 747, 971
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 6 cut(s) 118, 490, 525, 713, 907, 962
MlyI GAGTC 3 cut(s) 266, 320, 799
MmeI TCCRAC 4 cut(s) 48, 288, 837, 960
Mph1103I ATGCAT 1 cut(s) 865
MroI TCCGGA 1 cut(s) 500
MroXI GAANNNNTTC 2 cut(s) 156, 224
MseI TTAA 3 cut(s) 699, 731, 965
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 3 cut(s) 501, 627, 779
MspR9I CCNGG 2 cut(s) 588, 628
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 5 cut(s) 53, 110, 229, 335, 928
NciI CCSGG 1 cut(s) 628
NcoI CCATGG 4 cut(s) 318, 342, 807, 912
NdeI CATATG 1 cut(s) 838
NdeII GATC 3 cut(s) 14, 20, 375
NlaIII CATG 8 cut(s) 251, 280, 322, 346, 524, 811, 867, 916
NlaIV GGNNCC 2 cut(s) 16, 585
NmuCI GTSAC 3 cut(s) 94, 234, 944
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 2 cut(s) 280, 867
NspV TTCGAA 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 156, 224
PflMI CCANNNNNTGG 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 778
PkrI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 972
PleI GAGTC 3 cut(s) 265, 319, 798
PpsI GAGTC 3 cut(s) 265, 319, 798
Psp6I CCWGG 1 cut(s) 586
PspEI GGTNACC 1 cut(s) 944
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 16, 585
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 3 cut(s) 519, 708, 835
RsaNI GTAC 3 cut(s) 518, 707, 834
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 3 cut(s) 699, 731, 965
SatI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
Sau3AI GATC 3 cut(s) 14, 20, 375
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 3 cut(s) 266, 320, 799
ScrFI CCNGG 2 cut(s) 588, 628
SduI GDGCHC 1 cut(s) 668
SetI ASST 9 cut(s) 180, 198, 483, 697, 765, 824, 946, 951, 980
SfaNI GCATC 5 cut(s) 309, 347, 522, 850, 931
SfcI CTRYAG 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 392
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 6 cut(s) 118, 490, 525, 713, 907, 962
SspI AATATT 1 cut(s) 938
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 586, 626
StyI CCWWGG 5 cut(s) 318, 342, 370, 807, 912
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 78, 150, 392
TasI AATT 6 cut(s) 118, 490, 525, 713, 907, 962
TatI WGTACW 3 cut(s) 517, 706, 833
TauI GCSGC 5 cut(s) 40, 59, 104, 116, 973
Tru1I TTAA 3 cut(s) 699, 731, 965
Tru9I TTAA 3 cut(s) 699, 731, 965
TscAI CASTG 2 cut(s) 387, 832
TseFI GTSAC 3 cut(s) 94, 234, 944
TseI GCWGC 4 cut(s) 40, 385, 400, 548
Tsp45I GTSAC 3 cut(s) 94, 234, 944
TspDTI ATGAA 3 cut(s) 491, 589, 855
TspGWI ACGGA 2 cut(s) 42, 769
TspRI CASTG 2 cut(s) 387, 832
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 1 cut(s) 525
XceI RCATGY 2 cut(s) 280, 867
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 156, 224
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.