Rh7DG051000

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005151
Physical Location & Seq
Reverse (-)
3941698 .. 3943014
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG051000.1

Sequence Viewer

Length: 684 bp
ATGGTTGGGGATTTGAAGGAAAAGTGGGTAGCAGCCATCATGATCGGAGGTGCTCGTGTTCGGCTGAACCGGTGGCAGCATGCGGCTGTGGTAGTTGGGTCGGCGGTGGGGGCATTGTTGGACCCAAGAAGAGCTGACCTGATAGCAGCTTTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAGTTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAGCCATACTGTCGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATAATCCACCACCAGTGCGTTTCATGGAAATAGATGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTCTTTAACCTTCCAACAAACTTGATGGGTGAGTCAGCACTTAAAGTAATAGAGTTTCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGTTATAGGGGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTAGAGTTGGTATGCTGTCAACCGATCTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

227

Amino Acids

25.84

Weight (kDa)

8.91

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coq4 PF05019 19 - 226 7.3e-78 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 83, 104, 284
AclWI GGATC 2 cut(s) 285, 331
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 1 cut(s) 528
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 16, 547
AluBI AGCT 2 cut(s) 134, 149
AluI AGCT 2 cut(s) 134, 149
Alw21I GWGCWC 2 cut(s) 55, 417
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 413
AlwI GGATC 2 cut(s) 285, 331
AoxI GGCC 1 cut(s) 591
ApaLI GTGCAC 1 cut(s) 413
ApeKI GCWGC 4 cut(s) 32, 76, 146, 302
AsiGI ACCGGT 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 121, 591
AsuHPI GGTGA 1 cut(s) 473
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 417
BanII GRGCYC 2 cut(s) 406, 536
BauI CACGAG 2 cut(s) 54, 405
Bbv12I GWGCWC 2 cut(s) 55, 417
BbvI GCAGC 4 cut(s) 44, 88, 158, 289
BccI CCATC 2 cut(s) 44, 451
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 327
BglI GCCNNNNNGGC 2 cut(s) 216, 401
BisI GCNGC 5 cut(s) 33, 77, 84, 147, 303
BlsI GCNGC 5 cut(s) 34, 78, 85, 148, 304
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 591
BmiI GGNNCC 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 587
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse118I RCCGGY 2 cut(s) 69, 172
Bse1I ACTGG 2 cut(s) 169, 356
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 1 cut(s) 528
BseNI ACTGG 2 cut(s) 169, 356
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 4 cut(s) 44, 88, 158, 289
BshFI GGCC 1 cut(s) 593
BshTI ACCGGT 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 55, 417
BsiSI CCGG 2 cut(s) 70, 173
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 593
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 4 cut(s) 55, 406, 417, 536
Bsp143I GATC 4 cut(s) 42, 277, 323, 619
BspACI CCGC 3 cut(s) 83, 104, 284
BspANI GGCC 1 cut(s) 593
BspHI TCATGA 2 cut(s) 39, 652
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 2 cut(s) 285, 331
BspQI GCTCTTC 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 69, 172
BsrI ACTGG 2 cut(s) 169, 356
BssAI RCCGGY 2 cut(s) 69, 172
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 4 cut(s) 42, 277, 323, 619
BssSI CACGAG 2 cut(s) 54, 405
BssT1I CCWWGG 1 cut(s) 587
Bst2BI CACGAG 2 cut(s) 54, 405
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 2 cut(s) 124, 197
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 81, 174
BstF5I GGATG 1 cut(s) 673
BstKTI GATC 4 cut(s) 45, 280, 326, 622
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 42, 277, 323, 619
BstMWI GCNNNNNNNGC 5 cut(s) 110, 216, 308, 392, 401
BstNSI RCATGY 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 417
BstV1I GCAGC 4 cut(s) 44, 88, 158, 289
BstX2I RGATCY 2 cut(s) 277, 323
BstYI RGATCY 2 cut(s) 277, 323
BsuRI GGCC 1 cut(s) 593
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 2 cut(s) 81, 174
CciI TCATGA 2 cut(s) 39, 652
Cfr10I RCCGGY 2 cut(s) 69, 172
Cfr13I GGNCC 2 cut(s) 121, 591
Csp6I GTAC 1 cut(s) 499
CspAI ACCGGT 1 cut(s) 69
CviQI GTAC 1 cut(s) 499
DpnI GATC 4 cut(s) 44, 279, 325, 621
DpnII GATC 4 cut(s) 42, 277, 323, 619
Eam1104I CTCTTC 2 cut(s) 124, 197
EarI CTCTTC 2 cut(s) 124, 197
EciI GGCGGA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 587
Eco24I GRGCYC 2 cut(s) 406, 536
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 406, 536
ErhI CCWWGG 1 cut(s) 587
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 5 cut(s) 33, 77, 84, 147, 303
FokI GGATG 1 cut(s) 680
FriOI GRGCYC 2 cut(s) 406, 536
Fsp4HI GCNGC 5 cut(s) 33, 77, 84, 147, 303
FspBI CTAG 1 cut(s) 327
GluI GCNGC 5 cut(s) 33, 77, 84, 147, 303
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 593
HapII CCGG 2 cut(s) 70, 173
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 1 cut(s) 464
HpaII CCGG 2 cut(s) 70, 173
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 2 cut(s) 415, 615
Hpy188I TCNGA 4 cut(s) 47, 195, 235, 675
Hpy188III TCNNGA 4 cut(s) 40, 341, 407, 653
Hpy8I GTNNAC 2 cut(s) 415, 615
HpyAV CCTTC 4 cut(s) 10, 209, 452, 512
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 257, 272, 386, 415
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 216, 308, 392, 401
KroI GCCGGC 1 cut(s) 172
KroNI GCCGGC 1 cut(s) 174
Kzo9I GATC 4 cut(s) 42, 277, 323, 619
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 9 cut(s) 83, 150, 152, 186, 225, 354, 369, 409, 587
Lsp1109I GCAGC 4 cut(s) 44, 88, 158, 289
MaeI CTAG 1 cut(s) 327
MalI GATC 4 cut(s) 44, 279, 325, 621
MboI GATC 4 cut(s) 42, 277, 323, 619
MboII GAAGA 4 cut(s) 141, 214, 272, 562
MflI RGATCY 2 cut(s) 277, 323
MhlI GDGCHC 4 cut(s) 55, 406, 417, 536
MluCI AATT 2 cut(s) 563, 679
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 3 cut(s) 99, 213, 470
MnlI CCTC 7 cut(s) 41, 393, 403, 443, 534, 649, 658
Mph1103I ATGCAT 1 cut(s) 274
MroNI GCCGGC 1 cut(s) 172
MseI TTAA 2 cut(s) 438, 474
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 2 cut(s) 70, 173
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 5 cut(s) 110, 216, 308, 392, 401
NaeI GCCGGC 1 cut(s) 174
NdeI CATATG 1 cut(s) 388
NdeII GATC 4 cut(s) 42, 277, 323, 619
NgoMIV GCCGGC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 123
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 83
NspV TTCGAA 1 cut(s) 180
PaeI GCATGC 1 cut(s) 83
PagI TCATGA 2 cut(s) 39, 652
PciSI GCTCTTC 1 cut(s) 124
PctI GAATGC 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 174
PinAI ACCGGT 1 cut(s) 69
PkrI GCNGC 5 cut(s) 34, 78, 85, 148, 304
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 121, 591
PsuI RGATCY 2 cut(s) 277, 323
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 438, 474
SatI GCNGC 5 cut(s) 33, 77, 84, 147, 303
Sau3AI GATC 4 cut(s) 42, 277, 323, 619
Sau96I GGNCC 2 cut(s) 121, 591
SchI GAGTC 1 cut(s) 473
SduI GDGCHC 4 cut(s) 55, 406, 417, 536
SetI ASST 8 cut(s) 52, 136, 141, 151, 414, 444, 504, 545
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 651
SphI GCATGC 1 cut(s) 83
Sse9I AATT 2 cut(s) 563, 679
SsiI CCGC 3 cut(s) 83, 104, 284
SspMI CTAG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 563, 679
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 438, 474
Tru9I TTAA 2 cut(s) 438, 474
TscAI CASTG 1 cut(s) 363
TseI GCWGC 4 cut(s) 32, 76, 146, 302
TspDTI ATGAA 5 cut(s) 215, 307, 355, 393, 641
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 1 cut(s) 363
VneI GTGCAC 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 121
XceI RCATGY 1 cut(s) 83
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.