Prupe.1G288800_v2.0.a1

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
28815248 .. 28817482
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G288800.3

Sequence Viewer

Length: 693 bp
ATGATAGGAAGTGCTCGTGTTCGGCTGAACCGGTGGCAGCAGGCAGCCGTTGCGGTTGGCTCGGCTGTGGGCGCATTGCTGGACCCAAGAAGAGCTGACCTCATAGCAGCTCTTGGAGAGACAACTGGGAAGCCTGCATTTGAAAGAGTTCTTGAAAGAATGAAGAAGAGCCCTGAAGGCAGGGCTGTACTATTGGAGCAACCCCGTGTAATATCTGTAAAAGTGGGTCATGCTTGGGATCTACCAGAAAACACATTTGGTGCGGCCTATGCAAAGTTCATGGGGTCCAGGAACTTCTCCCCAGATGATCGACCGCCAGTGCGGTTCATGGAAACGGACGAGCTTGCATACGTGGCCATGAGGGCTCGCGAGGTGCACGACTTCTGGCACACCCTTTTTGGCCTTCCAACGAACTTGATGGGTGAATCGGCACTCAAGGTAATAGAGTTTGAGCAAATGTACCTTCCCATGTGCCTGATGTCCGTTATAGGGGGGTCGGCCAGATTCAGTGAGAAGCAAAGAAAATTGTTCTTTCAACACTACTTTCCTTGGGCCATCCAAGCCGGAATGCAGTGCACAGATCTCATGTGTATATATTATGAGCAGCACTTTCATGAGGACTTGGAGGATGTTCGGAGAAAATGGGGCATAATTCCTGCTCCTGCTGTTCCTAAACAAACCCGAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

231

Amino Acids

26.12

Weight (kDa)

8.77

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 369
AciI CCGC 4 cut(s) 53, 263, 314, 322
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 2 cut(s) 354, 498
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 2 cut(s) 189, 461
AfiI CCNNNNNNNGG 1 cut(s) 489
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 3 cut(s) 143, 155, 536
AjnI CCWGG 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 4 cut(s) 95, 110, 343, 689
AluI AGCT 4 cut(s) 95, 110, 343, 689
Alw21I GWGCWC 3 cut(s) 16, 378, 578
Alw26I GTCTC 1 cut(s) 113
Alw44I GTGCAC 2 cut(s) 374, 574
AlwI GGATC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 5 cut(s) 264, 354, 400, 498, 552
ApaLI GTGCAC 2 cut(s) 374, 574
ApeKI GCWGC 5 cut(s) 37, 44, 107, 604, 686
AsiGI ACCGGT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 82, 285, 552
AsuHPI GGTGA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 681
AvaII GGWCC 2 cut(s) 82, 285
BaeGI GKGCMC 2 cut(s) 378, 578
BalI TGGCCA 1 cut(s) 356
BanII GRGCYC 2 cut(s) 173, 367
BauI CACGAG 1 cut(s) 15
Bbv12I GWGCWC 3 cut(s) 16, 378, 578
BbvI GCAGC 4 cut(s) 49, 56, 119, 616
BccI CCATC 2 cut(s) 412, 563
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 113
BglI GCCNNNNNGGC 2 cut(s) 177, 362
BglII AGATCT 1 cut(s) 580
BisI GCNGC 6 cut(s) 38, 45, 108, 264, 605, 687
BlsI GCNGC 6 cut(s) 39, 46, 109, 265, 606, 688
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 2 cut(s) 82, 285
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 3 cut(s) 82, 285, 552
BmiI GGNNCC 2 cut(s) 84, 286
BmrFI CCNGG 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpuEI CTTGAG 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 130, 317
Bse3DI GCAATG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 2 cut(s) 555, 634
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMI GCAATG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 130, 317
BseSI GKGCMC 2 cut(s) 378, 578
BseXI GCAGC 4 cut(s) 49, 56, 119, 616
Bsh1236I CGCG 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 5 cut(s) 266, 356, 402, 500, 554
BshTI ACCGGT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 314
BsiHKAI GWGCWC 3 cut(s) 16, 378, 578
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 2 cut(s) 31, 564
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 5 cut(s) 266, 356, 402, 500, 554
BsoBI CYCGRG 1 cut(s) 681
Bsp1286I GDGCHC 5 cut(s) 16, 173, 367, 378, 578
Bsp143I GATC 3 cut(s) 238, 307, 580
Bsp68I TCGCGA 1 cut(s) 369
BspACI CCGC 4 cut(s) 53, 263, 314, 322
BspANI GGCC 5 cut(s) 266, 356, 402, 500, 554
BspFNI CGCG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 2 cut(s) 84, 286
BspPI GGATC 1 cut(s) 246
BspQI GCTCTTC 2 cut(s) 85, 161
BsrDI GCAATG 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 2 cut(s) 130, 317
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 3 cut(s) 238, 307, 580
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 85, 161
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 4 cut(s) 42, 135, 345, 367
BstF5I GGATG 2 cut(s) 555, 634
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 3 cut(s) 241, 310, 583
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 238, 307, 580
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 7 cut(s) 50, 71, 177, 269, 353, 362, 560
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSLI GKGCMC 2 cut(s) 378, 578
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 49, 56, 119, 616
BstX2I RGATCY 2 cut(s) 238, 580
BstYI RGATCY 2 cut(s) 238, 580
BsuRI GGCC 5 cut(s) 266, 356, 402, 500, 554
BtsCI GGATG 2 cut(s) 555, 634
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 3 cut(s) 324, 514, 578
BtuMI TCGCGA 1 cut(s) 369
Cac8I GCNNGC 4 cut(s) 42, 135, 345, 367
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 3 cut(s) 82, 285, 552
Csp6I GTAC 2 cut(s) 188, 460
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 7 cut(s) 230, 280, 328, 358, 469, 586, 614
CviQI GTAC 2 cut(s) 188, 460
DpnI GATC 3 cut(s) 240, 309, 582
DpnII GATC 3 cut(s) 238, 307, 580
EaeI YGGCCR 2 cut(s) 354, 498
Eam1104I CTCTTC 2 cut(s) 85, 161
EarI CTCTTC 2 cut(s) 85, 161
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 2 cut(s) 173, 367
Eco47I GGWCC 2 cut(s) 82, 285
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 548
EcoT38I GRGCYC 2 cut(s) 173, 367
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 7 cut(s) 233, 283, 331, 361, 472, 589, 617
FatI CATG 7 cut(s) 229, 279, 327, 357, 468, 585, 613
Fnu4HI GCNGC 6 cut(s) 38, 45, 108, 264, 605, 687
FokI GGATG 2 cut(s) 542, 641
FriOI GRGCYC 2 cut(s) 173, 367
Fsp4HI GCNGC 6 cut(s) 38, 45, 108, 264, 605, 687
GlaI GCGC 1 cut(s) 73
GluI GCNGC 6 cut(s) 38, 45, 108, 264, 605, 687
HaeIII GGCC 5 cut(s) 266, 356, 402, 500, 554
HapII CCGG 2 cut(s) 31, 564
HhaI GCGC 1 cut(s) 74
Hin1II CATG 7 cut(s) 233, 283, 331, 361, 472, 589, 617
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 425, 504
HpaII CCGG 2 cut(s) 31, 564
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 376, 576
Hpy188I TCNGA 1 cut(s) 636
Hpy188III TCNNGA 3 cut(s) 152, 368, 614
Hpy8I GTNNAC 2 cut(s) 376, 576
HpyAV CCTTC 3 cut(s) 170, 413, 473
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 6 cut(s) 137, 272, 347, 376, 571, 576
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 71, 177, 269, 353, 362, 560
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 7 cut(s) 233, 283, 331, 361, 472, 589, 617
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 3 cut(s) 238, 307, 580
LguI GCTCTTC 2 cut(s) 85, 161
LmnI GCTCC 2 cut(s) 196, 664
Lsp1109I GCAGC 4 cut(s) 49, 56, 119, 616
MaeII ACGT 1 cut(s) 351
MalI GATC 3 cut(s) 240, 309, 582
MboI GATC 3 cut(s) 238, 307, 580
MboII GAAGA 3 cut(s) 102, 175, 178
MflI RGATCY 2 cut(s) 238, 580
MhlI GDGCHC 5 cut(s) 16, 173, 367, 378, 578
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 2 cut(s) 524, 651
MluNI TGGCCA 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 5 cut(s) 110, 354, 364, 610, 619
Mox20I TGGCCA 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 147
MscI TGGCCA 1 cut(s) 356
MseI TTAA 1 cut(s) 691
MslI CAYNNNNRTG 1 cut(s) 612
Msp20I TGGCCA 1 cut(s) 356
MspI CCGG 2 cut(s) 31, 564
MspR9I CCNGG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 7 cut(s) 50, 71, 177, 269, 353, 362, 560
NdeII GATC 3 cut(s) 238, 307, 580
NlaIII CATG 7 cut(s) 233, 283, 331, 361, 472, 589, 617
NlaIV GGNNCC 2 cut(s) 84, 286
NmeAIII GCCGAG 1 cut(s) 41
NruI TCGCGA 1 cut(s) 369
PagI TCATGA 1 cut(s) 613
PciSI GCTCTTC 2 cut(s) 85, 161
PctI GAATGC 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 425, 504
PfoI TCCNGGA 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 6 cut(s) 39, 46, 109, 265, 606, 688
Ppu21I YACGTR 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 84, 286
PspPI GGNCC 3 cut(s) 82, 285, 552
PsuI RGATCY 2 cut(s) 238, 580
RruI TCGCGA 1 cut(s) 369
RsaI GTAC 2 cut(s) 189, 461
RsaNI GTAC 2 cut(s) 188, 460
RseI CAYNNNNRTG 1 cut(s) 612
SapI GCTCTTC 2 cut(s) 85, 161
SaqAI TTAA 1 cut(s) 691
SatI GCNGC 6 cut(s) 38, 45, 108, 264, 605, 687
Sau3AI GATC 3 cut(s) 238, 307, 580
Sau96I GGNCC 3 cut(s) 82, 285, 552
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 5 cut(s) 16, 173, 367, 378, 578
SetI ASST 9 cut(s) 97, 102, 112, 345, 354, 375, 441, 465, 691
SinI GGWCC 2 cut(s) 82, 285
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 2 cut(s) 524, 651
SsiI CCGC 4 cut(s) 53, 263, 314, 322
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 548
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 310
TasI AATT 2 cut(s) 524, 651
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 2 cut(s) 425, 504
Tru1I TTAA 1 cut(s) 691
Tru9I TTAA 1 cut(s) 691
TscAI CASTG 3 cut(s) 324, 514, 578
TseI GCWGC 5 cut(s) 37, 44, 107, 604, 686
TspDTI ATGAA 4 cut(s) 176, 268, 316, 602
TspGWI ACGGA 2 cut(s) 350, 472
TspRI CASTG 3 cut(s) 324, 514, 578
VneI GTGCAC 2 cut(s) 374, 574
VpaK11BI GGWCC 2 cut(s) 82, 285
XmnI GAANNNNTTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.