Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005151

Physical Location & Seq

Genomic Coordinates Forward (+)

52742950 .. 52747971

Gene Structure 5022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG369200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATCGGAGGCGCTCGTGTTCGGCTGAACCGGTGGCAGCAGGCGGCGGTGGCGGTTGGTTCGGCGGTGGGAGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCAGCTCTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAGTTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAGCCATACTGTTGGAGCAACCCCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAACTTCTCTCCAGATGATCGACCACCAGTGCGTTTCATGGAAACAGATGAACTTGCATATGTAGCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTGTTTGACCTTCCAACAAACTTGATGGGTGAGTCAGCACTCAAAGTAATAGAGTTTCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGTTATAGGAGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCCAGCACTACTTTCCTTGGGCCATTCGAGCTGGTATGCAGTCAACAGATCTCATGTGTATTTATTATGAGAAACACTTTCATGAGGATTTGGAGGATGTTCGGAGAAAGTGGGGTATAACTCCTGCTCCTGCTGCACCTAAACAAACCCAAGCAGCAGCAGCTTCACCTGGTCTAGTGGAGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coq4

Protein Analysis

240

Amino Acids

26.98

Weight (kDa)

9.12

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coq4	PF05019	6 - 221	2.5e-84	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03690
fragaria_vesca	FvH4_4g29830
malus_domestica	MD13G1060600.v1.1 MD16G1059800.v1.1
prunus_persica	Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1 Prupe.1G288800_v2.0.a1
pyrus_communis	pycom13g05400
rosa_chinensis	RchiOBHm_Chr4g0438081
rosa_laevigata	RLG00000001446 RLG00000001447 RLG00000006389
rosa_multiflora	Rmu_sc0004728.1_g000006 Rmu_sc0006047.1_g000002 Rmu_sc0027297.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271190 Rroxscaffold_5G00379220
rosa_rugosa	Rorug04G0306500 Rorug04G0306600 Rorug04G0306700 Rorug04G0306800
rosa_samantha	Rh4AG358300 Rh4BG369200 Rh4CG383300 Rh7BG050900 Rh7CG053000 Rh7DG051000
rosa_wichuraiana	Rw0G016230 Rw7G004200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	44, 47, 53, 65, 245
AclWI	GGATC	2 cut(s)	246, 292
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	461
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	4 cut(s)	95, 110, 563, 695
AluI	AGCT	4 cut(s)	95, 110, 563, 695
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	246, 292
AoxI	GGCC	1 cut(s)	552
ApaLI	GTGCAC	1 cut(s)	374
ApeKI	GCWGC	7 cut(s)	37, 107, 263, 665, 686, 689, 692
AsiGI	ACCGGT	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	82, 552
AsuHPI	GGTGA	2 cut(s)	434, 690
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	2 cut(s)	15, 366
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	7 cut(s)	49, 119, 250, 652, 698, 701, 704
BccI	CCATC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	288, 707
BfoI	RGCGCY	1 cut(s)	15
BglI	GCCNNNNNGGC	2 cut(s)	177, 362
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	8 cut(s)	38, 45, 108, 264, 666, 687, 690, 693
BlsI	GCNGC	8 cut(s)	39, 46, 109, 265, 667, 688, 691, 694
Bme1390I	CCNGG	1 cut(s)	702
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 552
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	702
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	4 cut(s)	483, 513, 643, 673
Bse118I	RCCGGY	2 cut(s)	30, 133
Bse1I	ACTGG	2 cut(s)	130, 317
Bse3DI	GCAATG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	1 cut(s)	634
BseMI	GCAATG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	130, 317
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	7 cut(s)	49, 119, 250, 652, 698, 701, 704
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	1 cut(s)	554
BshTI	ACCGGT	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	31, 134
BsmAI	GTCTC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	367, 378
Bsp143I	GATC	5 cut(s)	3, 238, 284, 307, 580
BspACI	CCGC	5 cut(s)	44, 47, 53, 65, 245
BspANI	GGCC	1 cut(s)	554
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	246, 292
BspQI	GCTCTTC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	30, 133
BsrI	ACTGG	2 cut(s)	130, 317
BssAI	RCCGGY	2 cut(s)	30, 133
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	5 cut(s)	3, 238, 284, 307, 580
BssSI	CACGAG	2 cut(s)	15, 366
BssT1I	CCWWGG	1 cut(s)	548
Bst2BI	CACGAG	2 cut(s)	15, 366
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	85, 158
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	42, 135
BstF5I	GGATG	1 cut(s)	634
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	5 cut(s)	6, 241, 287, 310, 583
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	3, 238, 284, 307, 580
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 71, 177, 269, 353, 362, 560, 665, 692
BstNI	CCWGG	1 cut(s)	702
BstSCI	CCNGG	1 cut(s)	700
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	7 cut(s)	49, 119, 250, 652, 698, 701, 704
BstX2I	RGATCY	3 cut(s)	238, 284, 580
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	3 cut(s)	238, 284, 580
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	42, 135
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	2 cut(s)	30, 133
Cfr13I	GGNCC	2 cut(s)	82, 552
CsiI	ACCWGGT	1 cut(s)	700
Csp6I	GTAC	1 cut(s)	460
CspAI	ACCGGT	1 cut(s)	30
CviAII	CATG	8 cut(s)	230, 234, 280, 328, 358, 469, 586, 614
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	5 cut(s)	5, 240, 286, 309, 582
DpnII	GATC	5 cut(s)	3, 238, 284, 307, 580
Eam1104I	CTCTTC	2 cut(s)	85, 158
EarI	CTCTTC	2 cut(s)	85, 158
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	548
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	8 cut(s)	233, 237, 283, 331, 361, 472, 589, 617
FatI	CATG	8 cut(s)	229, 233, 279, 327, 357, 468, 585, 613
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	8 cut(s)	38, 45, 108, 264, 666, 687, 690, 693
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	8 cut(s)	38, 45, 108, 264, 666, 687, 690, 693
FspBI	CTAG	2 cut(s)	288, 707
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	8 cut(s)	38, 45, 108, 264, 666, 687, 690, 693
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	2 cut(s)	31, 134
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	8 cut(s)	233, 237, 283, 331, 361, 472, 589, 617
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	2 cut(s)	31, 134
HphI	GGTGA	2 cut(s)	434, 690
Hpy166II	GTNNAC	2 cut(s)	376, 576
Hpy188I	TCNGA	3 cut(s)	8, 156, 636
Hpy188III	TCNNGA	3 cut(s)	302, 368, 614
Hpy8I	GTNNAC	2 cut(s)	376, 576
HpyAV	CCTTC	3 cut(s)	170, 413, 473
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	6 cut(s)	218, 233, 347, 376, 571, 668
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 71, 177, 269, 353, 362, 560, 665, 692
Hsp92II	CATG	8 cut(s)	233, 237, 283, 331, 361, 472, 589, 617
HspAI	GCGC	1 cut(s)	12
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	3, 238, 284, 307, 580
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	3 cut(s)	71, 196, 664
Lsp1109I	GCAGC	7 cut(s)	49, 119, 250, 652, 698, 701, 704
MabI	ACCWGGT	1 cut(s)	700
MaeI	CTAG	2 cut(s)	288, 707
MalI	GATC	5 cut(s)	5, 240, 286, 309, 582
MboI	GATC	5 cut(s)	3, 238, 284, 307, 580
MboII	GAAGA	4 cut(s)	102, 175, 233, 523
MflI	RGATCY	3 cut(s)	238, 284, 580
MhlI	GDGCHC	2 cut(s)	367, 378
MluCI	AATT	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	2 cut(s)	174, 431
MnlI	CCTC	6 cut(s)	354, 364, 485, 495, 610, 619
Mph1103I	ATGCAT	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	133
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	2 cut(s)	31, 134
MspR9I	CCNGG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	9 cut(s)	50, 71, 177, 269, 353, 362, 560, 665, 692
NaeI	GCCGGC	1 cut(s)	135
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	3, 238, 284, 307, 580
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	8 cut(s)	233, 237, 283, 331, 361, 472, 589, 617
NlaIV	GGNNCC	1 cut(s)	84
NsiI	ATGCAT	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	141
PagI	TCATGA	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	85
PctI	GAATGC	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	135
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	8 cut(s)	39, 46, 109, 265, 667, 688, 691, 694
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	82, 552
PsuI	RGATCY	3 cut(s)	238, 284, 580
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	85
SatI	GCNGC	8 cut(s)	38, 45, 108, 264, 666, 687, 690, 693
Sau3AI	GATC	5 cut(s)	3, 238, 284, 307, 580
Sau96I	GGNCC	2 cut(s)	82, 552
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	702
SduI	GDGCHC	2 cut(s)	367, 378
SexAI	ACCWGGT	1 cut(s)	700
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	5 cut(s)	44, 47, 53, 65, 245
SspMI	CTAG	2 cut(s)	288, 707
StyD4I	CCNGG	1 cut(s)	700
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	141, 310, 559
TasI	AATT	1 cut(s)	524
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	7 cut(s)	37, 107, 263, 665, 686, 689, 692
TspDTI	ATGAA	5 cut(s)	176, 268, 316, 354, 602
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	324
VneI	GTGCAC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	2 cut(s)	288, 707
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.