Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Reverse (-)

1554083 .. 1555514

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTGGCACATGGCTTACCAACTCTCTATGCCTTGGAGAGTGTACAAAGTTCAAAGCTCAAGGGTTTTGTGACTTTGAAGTCTCCAAGAGAATCAGTTTCAGATGCTCAAGTTGGAGCTGTTGTTGCACCTCAAATCTCGAAGCAAAACAAACAATGTACTGGTTTCTGGGTTTCATATTATTTGAGAGTTGAAATGAATCCTGAGAATAACATAGAAGAAGAATACGTTTTGATGAGTTTGGCTTCAATTTTGTTGAAGAGACCTTTTTCATGGGTCTCTCTCCTCGCCCCTCCACTTCTTCACATCCTTGGCATTCGCTTCTTACATCTCCTCCTTACTTGTACTGCTTTGTTCTTCTCCTCTTTCTTCTTCCCAATCTCACTTCCTCATTCTTCAATACAATCATCAAAACAAGATCAAGATCAAGAAGGACACTATATTGCCACCAAAGATATTACCGGGAAATCGGAGGAAAACCTGGAGAAGACCAATGAAGAGGATGACGATGGCGCAATCCCGGATGATGAGAGCCTCATAGAGCTGTCTTTACCGAGTGGTCACTACCTTGGTCACCACTACAATAGTAACAAGAACCATCTCTATATCCACAACAAAGTACAAGATTTCAGGCTCTTTGATCTATTGAATGAAATTAACGATTTTACCGAAGAAGATAATCTCATTGAAATCGATATCTCCATCGGATCCATTAAGTATTCAAGGTTTGAGATCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

28.02

Weight (kDa)

5.07

Isoelectric Point (pI)

67.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	79
AclWI	GGATC	2 cut(s)	702, 715
AfaI	GTAC	4 cut(s)	45, 160, 346, 621
AgsI	TTSAA	9 cut(s)	54, 79, 194, 249, 259, 399, 649, 689, 723
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	4 cut(s)	58, 119, 544, 740
AluI	AGCT	4 cut(s)	58, 119, 544, 740
Alw26I	GTCTC	3 cut(s)	87, 256, 283
AlwI	GGATC	2 cut(s)	702, 715
AspLEI	GCGC	1 cut(s)	515
AsuC2I	CCSGG	2 cut(s)	463, 521
AsuHPI	GGTGA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	494
BccI	CCATC	3 cut(s)	503, 606, 710
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	2 cut(s)	463, 521
BcoDI	GTCTC	3 cut(s)	87, 256, 283
Bme1390I	CCNGG	3 cut(s)	463, 482, 521
BmiI	GGNNCC	1 cut(s)	709
BmrFI	CCNGG	3 cut(s)	463, 482, 521
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	503
BpuEI	CTTGAG	2 cut(s)	44, 93
BpuMI	CCSGG	2 cut(s)	463, 521
Bsa29I	ATCGAT	1 cut(s)	693
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	2 cut(s)	256, 283
BsaJI	CCNNGG	3 cut(s)	33, 310, 568
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 318, 348
Bse1I	ACTGG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	482
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	33, 310, 568
BseGI	GGATG	3 cut(s)	306, 508, 529
BseJI	GATNNNNATC	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	3 cut(s)	275, 323, 352
BshVI	ATCGAT	1 cut(s)	693
BsiSI	CCGG	2 cut(s)	462, 521
BsmAI	GTCTC	3 cut(s)	87, 256, 283
BsmI	GAATGC	1 cut(s)	315
Bso31I	GGTCTC	2 cut(s)	256, 283
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	418, 424, 640, 707, 732
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	709
BspPI	GGATC	2 cut(s)	702, 715
BspTNI	GGTCTC	2 cut(s)	256, 283
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	33, 310, 568
BssMI	GATC	5 cut(s)	418, 424, 640, 707, 732
BssT1I	CCWWGG	3 cut(s)	33, 310, 568
Bst2UI	CCWGG	1 cut(s)	482
Bst6I	CTCTTC	2 cut(s)	254, 492
BstAUI	TGTACA	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	204
BstEII	GGTNACC	1 cut(s)	572
BstF5I	GGATG	3 cut(s)	306, 508, 529
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	5 cut(s)	421, 427, 643, 710, 735
BstMAI	GTCTC	3 cut(s)	87, 256, 283
BstMBI	GATC	5 cut(s)	418, 424, 640, 707, 732
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	461, 480, 519
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
Bsu15I	ATCGAT	1 cut(s)	693
BsuTUI	ATCGAT	1 cut(s)	693
BtsCI	GGATG	3 cut(s)	306, 508, 529
CfoI	GCGC	1 cut(s)	515
ClaI	ATCGAT	1 cut(s)	693
Csp6I	GTAC	4 cut(s)	44, 159, 345, 620
CviAII	CATG	2 cut(s)	11, 273
CviJI	RGCY	8 cut(s)	15, 58, 119, 245, 534, 544, 634, 740
CviKI_1	RGCY	8 cut(s)	15, 58, 119, 245, 534, 544, 634, 740
CviQI	GTAC	4 cut(s)	44, 159, 345, 620
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	5 cut(s)	420, 426, 642, 709, 734
DpnII	GATC	5 cut(s)	418, 424, 640, 707, 732
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	254, 492
EarI	CTCTTC	2 cut(s)	254, 492
Eco130I	CCWWGG	3 cut(s)	33, 310, 568
Eco31I	GGTCTC	2 cut(s)	256, 283
Eco32I	GATATC	1 cut(s)	697
Eco91I	GGTNACC	1 cut(s)	572
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	697
EcoT14I	CCWWGG	3 cut(s)	33, 310, 568
ErhI	CCWWGG	3 cut(s)	33, 310, 568
FaeI	CATG	2 cut(s)	14, 276
FaiI	YATR	8 cut(s)	12, 30, 178, 215, 274, 441, 539, 606
FatI	CATG	2 cut(s)	10, 272
FokI	GGATG	3 cut(s)	293, 515, 536
GlaI	GCGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	503
HapII	CCGG	2 cut(s)	462, 521
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	14, 276
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	2 cut(s)	92, 199
HpaII	CCGG	2 cut(s)	462, 521
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	103, 472, 707
Hpy188III	TCNNGA	4 cut(s)	139, 203, 422, 428
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	14, 276
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	418, 424, 640, 707, 732
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	8 cut(s)	147, 154, 216, 467, 475, 494, 534, 616
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	4 cut(s)	70, 560, 572, 587
MalI	GATC	5 cut(s)	420, 426, 642, 709, 734
MboI	GATC	5 cut(s)	418, 424, 640, 707, 732
MflI	RGATCY	1 cut(s)	707
MluCI	AATT	2 cut(s)	249, 654
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	9 cut(s)	141, 296, 303, 344, 373, 399, 466, 493, 545
MseI	TTAA	2 cut(s)	657, 714
MspI	CCGG	2 cut(s)	462, 521
MspR9I	CCNGG	3 cut(s)	463, 482, 521
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	463, 521
NdeII	GATC	5 cut(s)	418, 424, 640, 707, 732
NlaIII	CATG	2 cut(s)	14, 276
NlaIV	GGNNCC	1 cut(s)	709
NmuCI	GTSAC	3 cut(s)	70, 560, 572
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	92, 199
PfoI	TCCNGGA	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	480
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	707
RsaI	GTAC	4 cut(s)	45, 160, 346, 621
RsaNI	GTAC	4 cut(s)	44, 159, 345, 620
SaqAI	TTAA	2 cut(s)	657, 714
Sau3AI	GATC	5 cut(s)	418, 424, 640, 707, 732
ScrFI	CCNGG	3 cut(s)	463, 482, 521
SfaNI	GCATC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	59, 108
SmoI	CTYRAG	2 cut(s)	59, 108
Sse9I	AATT	2 cut(s)	249, 654
StyD4I	CCNGG	3 cut(s)	461, 480, 519
StyI	CCWWGG	3 cut(s)	33, 310, 568
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	140, 693
TasI	AATT	2 cut(s)	249, 654
TatI	WGTACW	4 cut(s)	43, 158, 344, 619
TfiI	GAWTC	2 cut(s)	92, 199
Tru1I	TTAA	2 cut(s)	657, 714
Tru9I	TTAA	2 cut(s)	657, 714
TseFI	GTSAC	3 cut(s)	70, 560, 572
Tsp45I	GTSAC	3 cut(s)	70, 560, 572
TspDTI	ATGAA	5 cut(s)	165, 212, 261, 510, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.