Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002072.1

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Reverse (-)

103923 .. 106749

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002072.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgaacaatgaggctcccaaatacttggtagtggcacaaagttcaacaccagatttggtagtagaaagtgcatgccttgatgacttatcaactagtgaggagtctgaagtactagactggccatttggagacaatgtggatcggagtccagattgctcatacggttcaatctccgacgagaaaagcctcatcgaaatatccctccccgacggatattatgttggccatgacaaggaagaagagtccatctttagtctgcaacagaaaatgtcagatgatcgttaccagattagaatctacactgtacgtaagattcaatacggtgaagagatcacattggactacaactctattaaggagagtaaggaagaatatgaagcatcagattgtttttgcggcagtcaagtttgccggggaggttacctgaatttgataagcgaaggatcattcttggaggatcgaacatatgctgcatatgctgcacaagatggaaattggattgctcgtattgcaacattgcttgtgggtaattttgagtctaaaaaggcaggcaaggaggaaatggcgcagaaatgccaagaaatggagaaacgaagttttcccaatcctattaggagaaggaatcccagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.82

Weight (kDa)

4.5

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	583
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	3 cut(s)	147, 451, 465
AcoI	YGGCCR	2 cut(s)	119, 223
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	111, 306
AfiI	CCNNNNNNNGG	2 cut(s)	232, 583
AgsI	TTSAA	3 cut(s)	45, 168, 317
AhlI	ACTAGT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	147, 451, 465
AoxI	GGCC	2 cut(s)	119, 223
ApeKI	GCWGC	2 cut(s)	470, 479
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	1 cut(s)	568
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	335
BalI	TGGCCA	2 cut(s)	121, 225
BbvI	GCAGC	2 cut(s)	457, 466
BccI	CCATC	2 cut(s)	254, 482
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	93, 113
BisI	GCNGC	3 cut(s)	397, 471, 480
BlsI	GCNGC	3 cut(s)	398, 472, 481
BmcAI	AGTACT	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	413
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 583
Bse1I	ACTGG	2 cut(s)	122, 627
Bse3DI	GCAATG	1 cut(s)	515
Bse8I	GATNNNNATC	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	412
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	2 cut(s)	232, 583
BseMI	GCAATG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	122, 627
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	457, 466
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	121, 225
BsiSI	CCGG	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	232, 583
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	121, 225
Bsp143I	GATC	5 cut(s)	139, 277, 330, 443, 457
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	121, 225
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	147, 451, 465
BsrDI	GCAATG	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	122, 627
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	5 cut(s)	139, 277, 330, 443, 457
Bst4CI	ACNGT	3 cut(s)	164, 304, 323
Bst6I	CTCTTC	2 cut(s)	234, 321
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	73, 550
BstEII	GGTNACC	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	5 cut(s)	142, 280, 333, 446, 460
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	5 cut(s)	139, 277, 330, 443, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 479, 509
BstNSI	RCATGY	1 cut(s)	75
BstPI	GGTNACC	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	411
BstSNI	TACGTA	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	457, 466
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	121, 225
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	73, 550
CfoI	GCGC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	110, 305
CviAII	CATG	2 cut(s)	72, 227
CviJI	RGCY	4 cut(s)	14, 121, 186, 225
CviKI_1	RGCY	4 cut(s)	14, 121, 186, 225
CviQI	GTAC	2 cut(s)	110, 305
DpnI	GATC	5 cut(s)	141, 279, 332, 445, 459
DpnII	GATC	5 cut(s)	139, 277, 330, 443, 457
EaeI	YGGCCR	2 cut(s)	119, 223
Eam1104I	CTCTTC	2 cut(s)	234, 321
EarI	CTCTTC	2 cut(s)	234, 321
Eco105I	TACGTA	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	126
Eco91I	GGTNACC	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	419
FaeI	CATG	2 cut(s)	75, 230
FaiI	YATR	9 cut(s)	73, 160, 219, 228, 375, 466, 468, 475, 477
FatI	CATG	2 cut(s)	71, 226
FauNDI	CATATG	2 cut(s)	466, 475
Fnu4HI	GCNGC	3 cut(s)	397, 471, 480
Fsp4HI	GCNGC	3 cut(s)	397, 471, 480
FspBI	CTAG	2 cut(s)	93, 113
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	3 cut(s)	397, 471, 480
HaeIII	GGCC	2 cut(s)	121, 225
HapII	CCGG	1 cut(s)	412
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	2 cut(s)	75, 230
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HinfI	GANTC	7 cut(s)	101, 145, 242, 294, 313, 536, 622
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	5 cut(s)	106, 144, 175, 274, 385
Hpy188III	TCNNGA	1 cut(s)	149
Hpy99I	CGWCG	2 cut(s)	179, 212
HpyAV	CCTTC	2 cut(s)	434, 612
HpyCH4III	ACNGT	3 cut(s)	164, 304, 323
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	5 cut(s)	71, 259, 473, 482, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 479, 509
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	75, 230
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	5 cut(s)	139, 277, 330, 443, 457
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	63, 103, 162, 299, 425, 437, 534
Lsp1109I	GCAGC	2 cut(s)	457, 466
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	93, 113
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	281, 419
MalI	GATC	5 cut(s)	141, 279, 332, 445, 459
MboI	GATC	5 cut(s)	139, 277, 330, 443, 457
MboII	GAAGA	4 cut(s)	248, 251, 338, 380
MlsI	TGGCCA	2 cut(s)	121, 225
MluCI	AATT	3 cut(s)	427, 493, 529
MluNI	TGGCCA	2 cut(s)	121, 225
MlyI	GAGTC	4 cut(s)	110, 154, 251, 545
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	7 cut(s)	4, 91, 197, 212, 410, 448, 550
Mox20I	TGGCCA	2 cut(s)	121, 225
MscI	TGGCCA	2 cut(s)	121, 225
MseI	TTAA	1 cut(s)	354
Msp20I	TGGCCA	2 cut(s)	121, 225
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	476, 479, 509
NciI	CCSGG	1 cut(s)	413
NdeI	CATATG	2 cut(s)	466, 475
NdeII	GATC	5 cut(s)	139, 277, 330, 443, 457
NlaIII	CATG	2 cut(s)	75, 230
NlaIV	GGNNCC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	294, 313, 622
PflMI	CCANNNNNTGG	1 cut(s)	583
PkrI	GCNGC	3 cut(s)	398, 472, 481
PleI	GAGTC	4 cut(s)	109, 153, 250, 544
PpsI	GAGTC	4 cut(s)	109, 153, 250, 544
Ppu21I	YACGTR	1 cut(s)	308
PspEI	GGTNACC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	15
RsaI	GTAC	2 cut(s)	111, 306
RsaNI	GTAC	2 cut(s)	110, 305
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	397, 471, 480
Sau3AI	GATC	5 cut(s)	139, 277, 330, 443, 457
ScaI	AGTACT	1 cut(s)	111
SchI	GAGTC	4 cut(s)	110, 154, 251, 545
ScrFI	CCNGG	1 cut(s)	413
SetI	ASST	3 cut(s)	310, 421, 426
SfaNI	GCATC	1 cut(s)	389
SnaBI	TACGTA	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	92
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	3 cut(s)	427, 493, 529
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	2 cut(s)	93, 113
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	164, 304, 323
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	192, 460
TasI	AATT	3 cut(s)	427, 493, 529
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	294, 313, 622
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	470, 479
TspDTI	ATGAA	2 cut(s)	17, 390
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	583
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	75
XspI	CTAG	2 cut(s)	93, 113
ZrmI	AGTACT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.