Rw2G024070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002640
Physical Location & Seq
Forward (+)
35440257 .. 35443335
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024070.1

Sequence Viewer

Length: 678 bp
ATGATTATGTGGAATTTAGGTTTGCATATCTCAATTCGGTTTTACTTTGGCTTTGCAAAAATATATAATATATCTTCTTCTGCTCACTTTGCTTCCTCTTTATTTCCACCACCATTGATTGTGGTTCTTGCTCCATTAATTATTTTGGTGGGTTTGATACTGGGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAACATTGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTGCTTGAGAGATTAGTTGAAGAAAAAGTTGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATACTTGGTAGCGGCAAAAAGTTTAACACCAGATTTGGTAGTAGAAAGTGCATGCCTTGATGACTTATCAACTAGTGAGGAGTCTGAAGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAGATTGCTCAGACGGTTCAATCTCCGACGAGAAAAGCCTCATCGAAATATCCCTCCCCAACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTACTGAGATCAATGAGGACGAAAATATGATTGAAATTGACATATCCATGGGCTCAATCAAGTGCTCAAGGTTTGAGATTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.07

Weight (kDa)

4.3

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 486
AcoI YGGCCR 2 cut(s) 458, 562
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 571
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 227
AgsI TTSAA 5 cut(s) 269, 329, 507, 623, 671
AhlI ACTAGT 1 cut(s) 431
AluBI AGCT 1 cut(s) 674
AluI AGCT 1 cut(s) 674
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 1 cut(s) 462
AlwI GGATC 1 cut(s) 486
AoxI GGCC 2 cut(s) 458, 562
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
AseI ATTAAT 1 cut(s) 137
BalI TGGCCA 2 cut(s) 460, 564
BanII GRGCYC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 656
BccI CCATC 2 cut(s) 188, 593
BcoDI GTCTC 1 cut(s) 462
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 432, 452
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmcAI AGTACT 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 275, 640
BsaJI CCNNGG 1 cut(s) 636
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 2 cut(s) 165, 461
BseDI CCNNGG 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 510, 585
BseNI ACTGG 2 cut(s) 165, 461
BseRI GAGGAG 1 cut(s) 452
BshFI GGCC 2 cut(s) 460, 564
BsiHKAI GWGCWC 1 cut(s) 656
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 462
BsnI GGCC 2 cut(s) 460, 564
Bsp1286I GDGCHC 2 cut(s) 644, 656
Bsp143I GATC 2 cut(s) 478, 597
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 460, 564
BspCNI CTCAG 2 cut(s) 509, 586
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 1 cut(s) 486
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 2 cut(s) 165, 461
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 2 cut(s) 478, 597
BssT1I CCWWGG 1 cut(s) 636
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 573
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 496, 594
BstDSI CCRYGG 1 cut(s) 636
BstKTI GATC 2 cut(s) 481, 600
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 2 cut(s) 478, 597
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 2 cut(s) 231, 414
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 2 cut(s) 460, 564
BtgI CCRYGG 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 4 cut(s) 228, 411, 566, 637
CviJI RGCY 8 cut(s) 51, 165, 353, 460, 525, 564, 642, 674
CviKI_1 RGCY 8 cut(s) 51, 165, 353, 460, 525, 564, 642, 674
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 496, 594
DpnI GATC 2 cut(s) 480, 599
DpnII GATC 2 cut(s) 478, 597
EaeI YGGCCR 2 cut(s) 458, 562
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 4 cut(s) 231, 414, 569, 640
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 4 cut(s) 227, 410, 565, 636
Fnu4HI GCNGC 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 2 cut(s) 432, 452
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 2 cut(s) 460, 564
Hin1II CATG 4 cut(s) 231, 414, 569, 640
HindIII AAGCTT 1 cut(s) 672
HinfI GANTC 3 cut(s) 440, 484, 581
Hpy188I TCNGA 5 cut(s) 292, 445, 483, 499, 514
Hpy188III TCNNGA 2 cut(s) 329, 488
Hpy99I CGWCG 1 cut(s) 518
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4V TGCA 3 cut(s) 25, 56, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 496, 594
Hsp92II CATG 4 cut(s) 231, 414, 569, 640
Kzo9I GATC 2 cut(s) 478, 597
LmnI GCTCC 2 cut(s) 136, 358
LpnPI CCDG 5 cut(s) 146, 258, 402, 442, 501
MaeI CTAG 2 cut(s) 432, 452
MalI GATC 2 cut(s) 480, 599
MboI GATC 2 cut(s) 478, 597
MboII GAAGA 7 cut(s) 66, 69, 175, 214, 281, 587, 590
MhlI GDGCHC 2 cut(s) 644, 656
MlsI TGGCCA 2 cut(s) 460, 564
MluCI AATT 4 cut(s) 13, 33, 138, 624
MluNI TGGCCA 2 cut(s) 460, 564
MlyI GAGTC 3 cut(s) 449, 493, 590
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 6 cut(s) 106, 343, 430, 536, 551, 598
Mox20I TGGCCA 2 cut(s) 460, 564
MscI TGGCCA 2 cut(s) 460, 564
MseI TTAA 3 cut(s) 137, 285, 383
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 2 cut(s) 460, 564
MspCI CTTAAG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 89
NcoI CCATGG 1 cut(s) 636
NdeII GATC 2 cut(s) 478, 597
NlaIII CATG 4 cut(s) 231, 414, 569, 640
NlaIV GGNNCC 1 cut(s) 354
NspI RCATGY 2 cut(s) 231, 414
PaeI GCATGC 1 cut(s) 414
PciI ACATGT 1 cut(s) 227
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 3 cut(s) 448, 492, 589
PpsI GAGTC 3 cut(s) 448, 492, 589
PscI ACATGT 1 cut(s) 227
PshBI ATTAAT 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 354
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 3 cut(s) 137, 285, 383
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 2 cut(s) 478, 597
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 3 cut(s) 449, 493, 590
SduI GDGCHC 2 cut(s) 644, 656
SetI ASST 4 cut(s) 22, 247, 662, 676
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 3 cut(s) 254, 284, 655
SmoI CTYRAG 3 cut(s) 254, 284, 655
SpeI ACTAGT 1 cut(s) 431
SphI GCATGC 1 cut(s) 414
Sse9I AATT 4 cut(s) 13, 33, 138, 624
SsiI CCGC 1 cut(s) 371
SspMI CTAG 2 cut(s) 432, 452
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 503
TaqI TCGA 1 cut(s) 531
TasI AATT 4 cut(s) 13, 33, 138, 624
TatI WGTACW 1 cut(s) 448
TauI GCSGC 1 cut(s) 374
Tru1I TTAA 3 cut(s) 137, 285, 383
Tru9I TTAA 3 cut(s) 137, 285, 383
TspDTI ATGAA 2 cut(s) 312, 356
TspGWI ACGGA 1 cut(s) 564
Vha464I CTTAAG 1 cut(s) 284
VspI ATTAAT 1 cut(s) 137
XapI RAATTY 1 cut(s) 13
XceI RCATGY 2 cut(s) 231, 414
XspI CTAG 2 cut(s) 432, 452
ZrmI AGTACT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.