Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Forward (+)

10111456 .. 10113687

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1117100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGCATTATCTTTATTGAAAGTCAGCAAAAACCTCTTCATCTGGTTGAGAATAAGTTAATTGAAGAAAAACTGTTCATTCCTTGCTTGGAAGATGCAAAATATCAAAGTGCTACCCCACAAGAGAAGGATGCTGAAGAAGCACCACTGAGCTCAACGGATTTGATATCAGAAAGTGAATGCCTTGATCACTTATCAACCAGTGATGATTCTGAATTAGTTGACTGGTCGTTTGGAGACAGTGTGGCTCGGAGCCCAGATTTCTCAGACGGCTCCATTTCCGACGAGGATAGCCTCATCGAAATAGCCCTCCCGGGTGGATACTATGTCGGTCACAAGGAGCATGACTCATTGTTTAACCTGCAGCAGAAAATGCCAGGTTTGTCGCCCCAGTCCATTTTTAAGCAGCATACTATATTGGAGCTTTTGGCTGAGATCAATGAGATGAATGAGGAAGAAAATTTGTTCGAAATCGACTTATCCGTGGGATCCATCAAGTGTTCAAGGTTTGAGATTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.51

Weight (kDa)

4.18

Isoelectric Point (pI)

80.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	369
AclWI	GGATC	2 cut(s)	483, 496
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	156
AgsI	TTSAA	4 cut(s)	20, 65, 504, 518
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	3 cut(s)	153, 424, 521
AluI	AGCT	3 cut(s)	153, 424, 521
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	483, 496
Ama87I	CYCGRG	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	364, 406
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AsuC2I	CCSGG	2 cut(s)	314, 315
AsuII	TTCGAA	1 cut(s)	468
AvaI	CYCGRG	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	488
BanII	GRGCYC	2 cut(s)	155, 257
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	376, 418
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	1 cut(s)	314
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	2 cut(s)	314, 315
BcoDI	GTCTC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	2 cut(s)	365, 407
BlsI	GCNGC	2 cut(s)	366, 408
Bme1390I	CCNGG	3 cut(s)	314, 315, 378
BmeT110I	CYCGRG	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	254, 274, 490
BmrFI	CCNGG	3 cut(s)	314, 315, 378
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	85, 121
BmuI	ACTGGG	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
Bpu14I	TTCGAA	1 cut(s)	468
BpuMI	CCSGG	2 cut(s)	314, 315
BsaJI	CCNNGG	2 cut(s)	313, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	3 cut(s)	201, 230, 391
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	313, 483
BseGI	GGATG	1 cut(s)	136
BseMII	CTCAG	3 cut(s)	140, 279, 423
BseNI	ACTGG	3 cut(s)	201, 230, 391
BseXI	GCAGC	2 cut(s)	376, 418
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	468
Bsp1286I	GDGCHC	2 cut(s)	155, 257
Bsp143I	GATC	3 cut(s)	187, 435, 488
BspCNI	CTCAG	3 cut(s)	141, 278, 424
BspLI	GGNNCC	3 cut(s)	254, 274, 490
BspMAI	CTGCAG	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	483, 496
BspT104I	TTCGAA	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	201, 230, 391
BssECI	CCNNGG	2 cut(s)	313, 483
BssMI	GATC	3 cut(s)	187, 435, 488
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	75, 242
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstBI	TTCGAA	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	149, 265, 432
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	190, 438, 491
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	3 cut(s)	187, 435, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 373
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	3 cut(s)	312, 313, 376
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	376, 418
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	3 cut(s)	146, 208, 247
BveI	ACCTGC	1 cut(s)	369
Cfr9I	CCCGGG	1 cut(s)	313
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	9 cut(s)	153, 248, 255, 273, 294, 308, 424, 431, 521
CviKI_1	RGCY	9 cut(s)	153, 248, 255, 273, 294, 308, 424, 431, 521
DdeI	CTNAG	3 cut(s)	149, 265, 432
DpnI	GATC	3 cut(s)	189, 437, 490
DpnII	GATC	3 cut(s)	187, 435, 488
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	155, 257
Eco32I	GATATC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	155, 257
FaeI	CATG	1 cut(s)	347
FaiI	YATR	4 cut(s)	327, 345, 411, 416
FatI	CATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	365, 407
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	2 cut(s)	155, 257
Fsp4HI	GCNGC	2 cut(s)	365, 407
GluI	GCNGC	2 cut(s)	365, 407
HapII	CCGG	1 cut(s)	314
Hin1II	CATG	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	2 cut(s)	209, 347
HpaII	CCGG	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	5 cut(s)	172, 214, 252, 268, 283
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	75, 242
HpyCH4V	TGCA	2 cut(s)	98, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 373
HpyF3I	CTNAG	3 cut(s)	149, 265, 432
Hsp92II	CATG	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	187, 435, 488
LmnI	GCTCC	4 cut(s)	252, 278, 340, 421
LpnPI	CCDG	9 cut(s)	29, 211, 214, 270, 327, 363, 374, 390, 404
Lsp1109I	GCAGC	2 cut(s)	376, 418
LweI	GCATC	2 cut(s)	85, 121
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	189, 437, 490
MboI	GATC	3 cut(s)	187, 435, 488
MboII	GAAGA	5 cut(s)	29, 77, 104, 149, 467
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	2 cut(s)	155, 257
MluCI	AATT	3 cut(s)	60, 215, 460
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	5 cut(s)	45, 280, 305, 320, 445
MseI	TTAA	3 cut(s)	59, 357, 402
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	3 cut(s)	314, 315, 378
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	140, 373
NciI	CCSGG	2 cut(s)	314, 315
NdeII	GATC	3 cut(s)	187, 435, 488
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	3 cut(s)	254, 274, 490
NmuCI	GTSAC	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	366, 408
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	254, 274, 490
PstI	CTGCAG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	59, 357, 402
SatI	GCNGC	2 cut(s)	365, 407
Sau3AI	GATC	3 cut(s)	187, 435, 488
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	3 cut(s)	314, 315, 378
SduI	GDGCHC	2 cut(s)	155, 257
SetI	ASST	7 cut(s)	37, 155, 363, 382, 426, 509, 523
SfaNI	GCATC	2 cut(s)	85, 121
SfcI	CTRYAG	1 cut(s)	362
SfuI	TTCGAA	1 cut(s)	468
SmaI	CCCGGG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	60, 215, 460
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	312, 313, 376
TaaI	ACNGT	2 cut(s)	75, 242
TaqI	TCGA	3 cut(s)	300, 468, 474
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	60, 215, 460
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	59, 357, 402
Tru9I	TTAA	3 cut(s)	59, 357, 402
TscAI	CASTG	3 cut(s)	153, 208, 247
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	364, 406
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	29, 67, 461
TspGWI	ACGGA	2 cut(s)	173, 472
TspMI	CCCGGG	1 cut(s)	313
TspRI	CASTG	3 cut(s)	153, 208, 247
XapI	RAATTY	1 cut(s)	460
XmaI	CCCGGG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.