Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Forward (+)

16002495 .. 16004094

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G242400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGAGACAGAGGACTTTGCTTTTCTCAAGAGAATCAACTTCTTCAGGTGATTTTGGATGAGAAACCAGTTGGGAATCCTCTCTGTGGCCAAGAAAACCTTCTGCATGATGGAGAGGGAGTTAGAGAGCAACTAGTTCAAGAAGTAGAAGATCAAAATGAGATAGGGCATGAACTGCTTCCAACTGTGGAAACTGTCACACAAACTGCCCAGCAAAGTGAAAATGTTACAAATTATGACGACCAAGTTGAACATCCTGATGTTCAATCAGAGAGTGATGAACAATCAGTTCCAAGTGAGAATTTTGAGCTCAGTTGGATGTGTTCTAACAATTTGGGTCCAAAAGTTGAGATATCTGATGGTTGTTCAGTCTCTGATGATGATGATGATAGCCTCATTGAGATCAATCTTCCAGCAAGTGAGCCAAAGGAAAAGCTGCAGTCAAATTTGCCAGACTCCATTTTCAGGCAACAAGGTCTAAGAGAGCAATTAGCAGATATCAATGAGGTGAATGAGGAAGACAACCTGATTGAGATTGACATTTCCATGGGCTCTATCAAGTGTCCAAGGTTTGAGATTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.8

Weight (kDa)

4.05

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	301, 445
AcuI	CTGAAG	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	86, 465
AgsI	TTSAA	4 cut(s)	140, 251, 266, 581
AhlI	ACTAGT	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	2 cut(s)	310, 436
AluI	AGCT	2 cut(s)	310, 436
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	376
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	301, 445
Asp700I	GAANNNNTTC	2 cut(s)	99, 177
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	61, 520
AvaII	GGWCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	90
BanII	GRGCYC	2 cut(s)	312, 554
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	2 cut(s)	104, 353
BcoDI	GTCTC	1 cut(s)	376
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	437
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	546, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 465
Bse1I	ACTGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	546, 566
BseGI	GGATG	3 cut(s)	64, 253, 324
BseLI	CCNNNNNNNGG	2 cut(s)	86, 465
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	86, 465
BsmAI	GTCTC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	312, 554
Bsp143I	GATC	2 cut(s)	151, 402
Bsp19I	CCATGG	1 cut(s)	546
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	546, 566
BssMI	GATC	2 cut(s)	151, 402
BssT1I	CCWWGG	2 cut(s)	546, 566
Bst4CI	ACNGT	2 cut(s)	187, 196
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	311, 479
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	64, 253, 324
BstKTI	GATC	2 cut(s)	154, 405
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	2 cut(s)	151, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	64, 253, 324
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	338
CviAII	CATG	4 cut(s)	107, 170, 547, 585
CviJI	RGCY	6 cut(s)	90, 310, 393, 424, 436, 552
CviKI_1	RGCY	6 cut(s)	90, 310, 393, 424, 436, 552
DdeI	CTNAG	2 cut(s)	311, 479
DpnI	GATC	2 cut(s)	153, 404
DpnII	GATC	2 cut(s)	151, 402
EaeI	YGGCCR	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	546, 566
Eco24I	GRGCYC	2 cut(s)	312, 554
Eco32I	GATATC	2 cut(s)	354, 499
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	310
EcoRV	GATATC	2 cut(s)	354, 499
EcoT14I	CCWWGG	2 cut(s)	546, 566
EcoT38I	GRGCYC	2 cut(s)	312, 554
ErhI	CCWWGG	2 cut(s)	546, 566
FaeI	CATG	4 cut(s)	110, 173, 550, 588
FaiI	YATR	5 cut(s)	108, 171, 237, 548, 586
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	4 cut(s)	106, 169, 546, 584
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	3 cut(s)	71, 240, 331
FriOI	GRGCYC	2 cut(s)	312, 554
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	1 cut(s)	437
GsaI	CCCAGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	110, 173, 550, 588
HinfI	GANTC	3 cut(s)	34, 76, 455
HphI	GGTGA	2 cut(s)	61, 520
Hpy188I	TCNGA	3 cut(s)	271, 358, 376
Hpy188III	TCNNGA	3 cut(s)	29, 140, 257
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	187, 196
HpyCH4V	TGCA	2 cut(s)	106, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	311, 479
Hsp92II	CATG	4 cut(s)	110, 173, 550, 588
Kzo9I	GATC	2 cut(s)	151, 402
LpnPI	CCDG	8 cut(s)	32, 81, 224, 270, 426, 451, 465, 539
Lsp1109I	GCAGC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	196, 226
MalI	GATC	2 cut(s)	153, 404
MboI	GATC	2 cut(s)	151, 402
MboII	GAAGA	4 cut(s)	35, 161, 401, 530
MhlI	GDGCHC	2 cut(s)	312, 554
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	5 cut(s)	232, 301, 331, 445, 488
MluNI	TGGCCA	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	206, 296
MnlI	CCTC	6 cut(s)	5, 90, 109, 404, 499, 508
Mox20I	TGGCCA	1 cut(s)	90
MroXI	GAANNNNTTC	2 cut(s)	99, 177
MscI	TGGCCA	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	258, 545
Msp20I	TGGCCA	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	2 cut(s)	151, 402
NlaIII	CATG	4 cut(s)	110, 173, 550, 588
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	196
PdmI	GAANNNNTTC	2 cut(s)	99, 177
PfeI	GAWTC	2 cut(s)	34, 76
PkrI	GCNGC	1 cut(s)	438
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	374
RseI	CAYNNNNRTG	2 cut(s)	258, 545
SacI	GAGCTC	1 cut(s)	312
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	151, 402
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	2 cut(s)	312, 554
SetI	ASST	8 cut(s)	51, 102, 312, 438, 478, 510, 528, 572
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	258, 545
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	5 cut(s)	232, 301, 331, 445, 488
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	546, 566
TaaI	ACNGT	2 cut(s)	187, 196
TasI	AATT	5 cut(s)	232, 301, 331, 445, 488
TfiI	GAWTC	2 cut(s)	34, 76
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	186, 294
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	301, 445
XmnI	GAANNNNTTC	2 cut(s)	99, 177
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.