RLG00000013745

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002640
Physical Location & Seq
Reverse (-)
39886704 .. 39888190
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013745

Sequence Viewer

Length: 633 bp
ATGGCTACTCCTTTGTGGTTCTTCATATTCCCACCACCATTGATTGTGGTTCTTGCTCCATTGCTTATATTGGTGGGTTTGATATTGAGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAACATTGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTACTTGAGAGAATAGTTGAAGAAAAAGTAGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATCCTTGGTAGCGGCACAAAGTTCAACACCAGATTTGGTAGTAGAAAGTGCATGCCTTGATGACTTATCAACTAGTGAGGAGTCTGAGGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAATTGCTCAGATGGGTGATGCTAATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTCGTGCCGACCTAATTATAAAGCAAAGGTTACTGCTGTAGATGGTCGTTACCAAATTGGAATGTACACTATACGTAAGATTCAATACGATGAAGAGATCACATTGGACTACAACTCTATTAAGGAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.43

Weight (kDa)

4.59

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 90 - 205 5.7e-11 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AciI CCGC 1 cut(s) 296
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 492
AfaI GTAC 2 cut(s) 375, 566
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 4 cut(s) 194, 254, 309, 584
AhlI ACTAGT 1 cut(s) 356
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 411
AoxI GGCC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 492
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AsuHPI GGTGA 1 cut(s) 440
BalI TGGCCA 1 cut(s) 385
BauI CACGAG 1 cut(s) 502
BccI CCATC 3 cut(s) 113, 418, 536
BcoDI GTCTC 1 cut(s) 387
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 2 cut(s) 357, 377
BfmI CTRYAG 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 2 cut(s) 421, 451
BpuEI CTTGAG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 360, 434
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 377
BshFI GGCC 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 387
BsnI GGCC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 2 cut(s) 403, 597
BspACI CCGC 1 cut(s) 296
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 2 cut(s) 361, 433
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 403, 597
BssSI CACGAG 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 502
Bst6I CTCTTC 1 cut(s) 588
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 369, 420
BstKTI GATC 2 cut(s) 406, 600
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 403, 597
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNSI RCATGY 2 cut(s) 156, 339
BstSFI CTRYAG 1 cut(s) 537
BstSNI TACGTA 1 cut(s) 575
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 337
Csp6I GTAC 2 cut(s) 374, 565
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 3 cut(s) 153, 336, 466
CviJI RGCY 4 cut(s) 5, 90, 278, 385
CviKI_1 RGCY 4 cut(s) 5, 90, 278, 385
CviQI GTAC 2 cut(s) 374, 565
DdeI CTNAG 2 cut(s) 369, 420
DpnI GATC 2 cut(s) 405, 599
DpnII GATC 2 cut(s) 403, 597
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco105I TACGTA 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 156, 339, 469
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 3 cut(s) 152, 335, 465
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 2 cut(s) 357, 377
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 385
Hin1II CATG 3 cut(s) 156, 339, 469
HinfI GANTC 3 cut(s) 365, 409, 580
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 5 cut(s) 217, 370, 408, 423, 632
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 567
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 3 cut(s) 335, 469, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 369, 420
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 3 cut(s) 156, 339, 469
Kzo9I GATC 2 cut(s) 403, 597
LmnI GCTCC 2 cut(s) 61, 283
LpnPI CCDG 3 cut(s) 183, 327, 367
LweI GCATC 2 cut(s) 421, 451
MaeI CTAG 2 cut(s) 357, 377
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 3 cut(s) 497, 529, 548
MalI GATC 2 cut(s) 405, 599
MboI GATC 2 cut(s) 403, 597
MboII GAAGA 5 cut(s) 13, 100, 139, 206, 605
MfeI CAATTG 1 cut(s) 414
MlsI TGGCCA 1 cut(s) 385
MluCI AATT 4 cut(s) 414, 492, 514, 555
MluNI TGGCCA 1 cut(s) 385
MlyI GAGTC 2 cut(s) 374, 418
MnlI CCTC 4 cut(s) 268, 355, 364, 619
Mox20I TGGCCA 1 cut(s) 385
Mph1103I ATGCAT 1 cut(s) 471
MscI TGGCCA 1 cut(s) 385
MseI TTAA 2 cut(s) 210, 621
Msp20I TGGCCA 1 cut(s) 385
MspCI CTTAAG 1 cut(s) 209
MunI CAATTG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeII GATC 2 cut(s) 403, 597
NlaIII CATG 3 cut(s) 156, 339, 469
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 497
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 2 cut(s) 156, 339
PaeI GCATGC 1 cut(s) 339
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 580
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 2 cut(s) 373, 417
PpsI GAGTC 2 cut(s) 373, 417
Ppu21I YACGTR 1 cut(s) 575
PscI ACATGT 1 cut(s) 152
PsiI TTATAA 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 279
RsaI GTAC 2 cut(s) 375, 566
RsaNI GTAC 2 cut(s) 374, 565
SaqAI TTAA 2 cut(s) 210, 621
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 403, 597
SchI GAGTC 2 cut(s) 374, 418
SetI ASST 8 cut(s) 92, 172, 375, 482, 514, 531, 577, 630
SfaNI GCATC 2 cut(s) 421, 451
SfcI CTRYAG 1 cut(s) 537
SmlI CTYRAG 2 cut(s) 179, 209
SmoI CTYRAG 2 cut(s) 179, 209
SnaBI TACGTA 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 356
SphI GCATGC 1 cut(s) 339
Sse9I AATT 4 cut(s) 414, 492, 514, 555
SsiI CCGC 1 cut(s) 296
SspMI CTAG 2 cut(s) 357, 377
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 1 cut(s) 577
TasI AATT 4 cut(s) 414, 492, 514, 555
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 2 cut(s) 210, 621
Tru9I TTAA 2 cut(s) 210, 621
TseFI GTSAC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 4 cut(s) 13, 237, 281, 606
Vha464I CTTAAG 1 cut(s) 209
XapI RAATTY 1 cut(s) 492
XceI RCATGY 2 cut(s) 156, 339
XspI CTAG 2 cut(s) 357, 377
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.