Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Reverse (-)

22696337 .. 22705678

Gene Structure 9342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG145600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGGAGGATTTTAGCGATGAGTTTGAGAAGTTGGAGAAGCCGGAGATGACGAAGTTCATTGGGGCGATAAAGAGGCTTTTGTGGTTCTTCATGGAGTTGAAAAGCATACTTGAAGATCAAATGGCTACTCCTTTGTGGTTCTTCAGATTCCCACCACCATTGATTGTGGTTCTTGCTCCATTGCTTATATTTGTGGGTTTGATACTGGGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAACCTTGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTGCTTGAGAGATTAGTTGAAGAAAAAGTTGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATACTTGGTAGCGGCACAAAGTTCAACACTAGTTTTGGTAGTAGAAAGTGCATGCCTTGATGACTTATCAACTAGTAAGGAGTCTGAAGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAGATTGCTCAGATGGTTCAATCTCCGACGAGAAAAGCCTCATCGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGGAAGAAGAATCCATCTTTACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.33

Weight (kDa)

4.32

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	534
AcoI	YGGCCR	2 cut(s)	506, 610
AcuI	CTGAAG	2 cut(s)	130, 513
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	103, 116, 317, 377, 432, 555
AhlI	ACTAGT	2 cut(s)	436, 479
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	534
AoxI	GGCC	2 cut(s)	506, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
BalI	TGGCCA	2 cut(s)	508, 612
BccI	CCATC	3 cut(s)	236, 542, 641
BcoDI	GTCTC	1 cut(s)	510
BcuI	ACTAGT	2 cut(s)	436, 479
BfaI	CTAG	3 cut(s)	437, 480, 500
BfrI	CTTAAG	1 cut(s)	332
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmcAI	AGTACT	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	402
BmrI	ACTGGG	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	213, 509
Bse3DI	GCAATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	213, 509
BshFI	GGCC	2 cut(s)	508, 612
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	508, 612
Bsp143I	GATC	2 cut(s)	118, 526
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	2 cut(s)	508, 612
BspCNI	CTCAG	1 cut(s)	557
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	534
BspTI	CTTAAG	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	213, 509
BssMI	GATC	2 cut(s)	118, 526
BstAFI	CTTAAG	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	544
BstKTI	GATC	2 cut(s)	121, 529
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	2 cut(s)	118, 526
BstNSI	RCATGY	2 cut(s)	279, 462
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	508, 612
BtgZI	GCGATG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	497
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	4 cut(s)	94, 276, 459, 614
CviJI	RGCY	8 cut(s)	43, 79, 128, 213, 401, 508, 573, 612
CviKI_1	RGCY	8 cut(s)	43, 79, 128, 213, 401, 508, 573, 612
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	1 cut(s)	544
DpnI	GATC	2 cut(s)	120, 528
DpnII	GATC	2 cut(s)	118, 526
EaeI	YGGCCR	2 cut(s)	506, 610
Eco57I	CTGAAG	2 cut(s)	130, 513
FaeI	CATG	4 cut(s)	97, 279, 462, 617
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	4 cut(s)	93, 275, 458, 613
Fnu4HI	GCNGC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	3 cut(s)	437, 480, 500
GluI	GCNGC	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	508, 612
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	4 cut(s)	97, 279, 462, 617
HinfI	GANTC	4 cut(s)	150, 488, 532, 629
HpaII	CCGG	1 cut(s)	44
Hpy188I	TCNGA	6 cut(s)	149, 340, 493, 531, 547, 562
Hpy188III	TCNNGA	2 cut(s)	377, 536
Hpy99I	CGWCG	2 cut(s)	566, 599
HpyCH4V	TGCA	1 cut(s)	458
HpyF3I	CTNAG	1 cut(s)	544
Hsp92II	CATG	4 cut(s)	97, 279, 462, 617
Kzo9I	GATC	2 cut(s)	118, 526
LmnI	GCTCC	2 cut(s)	184, 406
LpnPI	CCDG	5 cut(s)	57, 194, 306, 490, 549
MaeI	CTAG	3 cut(s)	437, 480, 500
MalI	GATC	2 cut(s)	120, 528
MboI	GATC	2 cut(s)	118, 526
MboII	GAAGA	8 cut(s)	82, 128, 136, 223, 262, 329, 635, 638
MlsI	TGGCCA	2 cut(s)	508, 612
MluNI	TGGCCA	2 cut(s)	508, 612
MlyI	GAGTC	2 cut(s)	497, 541
MmeI	TCCRAC	2 cut(s)	15, 585
MnlI	CCTC	4 cut(s)	69, 391, 584, 599
Mox20I	TGGCCA	2 cut(s)	508, 612
MscI	TGGCCA	2 cut(s)	508, 612
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	2 cut(s)	508, 612
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	118, 526
NlaIII	CATG	4 cut(s)	97, 279, 462, 617
NlaIV	GGNNCC	1 cut(s)	402
NspI	RCATGY	2 cut(s)	279, 462
PaeI	GCATGC	1 cut(s)	462
PciI	ACATGT	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	150, 629
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	2 cut(s)	496, 540
PpsI	GAGTC	2 cut(s)	496, 540
PscI	ACATGT	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	402
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	118, 526
ScaI	AGTACT	1 cut(s)	498
SchI	GAGTC	2 cut(s)	497, 541
SetI	ASST	2 cut(s)	251, 295
SmlI	CTYRAG	2 cut(s)	302, 332
SmoI	CTYRAG	2 cut(s)	302, 332
SpeI	ACTAGT	2 cut(s)	436, 479
SphI	GCATGC	1 cut(s)	462
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	3 cut(s)	437, 480, 500
TaqI	TCGA	1 cut(s)	579
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	150, 629
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TspDTI	ATGAA	4 cut(s)	49, 82, 360, 404
TspGWI	ACGGA	1 cut(s)	612
Vha464I	CTTAAG	1 cut(s)	332
XceI	RCATGY	2 cut(s)	279, 462
XspI	CTAG	3 cut(s)	437, 480, 500
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.