Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Forward (+)

14866740 .. 14867432

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTAGGACTAAATTAGTCAGTTCCTCATTGTGTTTTGCTGTCCTAATTTCTTGCCTAGGTCTCATTTTCTTAGTGAACTTTGACTTGTTCTTCGCTTTCCTTGTTACAATTTCTATCCTCTCAACTATCTTGCTCCTCACCAACACAAATAAAAAGCTGGTTATTTTGGATGAGAAACCAGTCGGAACTGTGAATCTCACCGGAGGCCAAGAAAACCTGCCGGATGCGGAGCAAGTTAGAGAGCAGCTGCTAGTTCGTAAAGATGTCAAGATTTCAAAGTCGGACCAGCAACTCACTACTAATTCTTCCAACGTCGACATGGAATTGTTGTATTCTCTAACACAAGAAGCAGAAAGTGAAAAAGATGTTGTAAAAGGGCTTCATCAACTGGTAGAGACTCTCACAGAAACTGCCCAACAAAGTGACCAAGTTGAAATTTTGGATTCTCCATCAGAAATAAGTGAGAATTTGGATAAGAAGTTTGAAGTTTCTGATGATTGTTCAGTCTCTGATGATGAAGAAGAAGATAGCCTCATTGAGATTACGCTGCAGTCAAATTTGCGACAAGATGTGAGAGAGGTGTTGGGAGATATGAGTGAGATGAATGAAGAAGAAAATCTGATTGAGATTGACATTTCAATGGGCTCCATCAAGTTTCCAAGGTTTCAGAGAGAGATTATTCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.81

Weight (kDa)

4.23

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	3 cut(s)	438, 469, 559
AgsI	TTSAA	5 cut(s)	279, 437, 488, 642, 686
AluBI	AGCT	2 cut(s)	160, 250
AluI	AGCT	2 cut(s)	160, 250
Alw26I	GTCTC	3 cut(s)	68, 392, 514
AlwNI	CAGNNNCTG	2 cut(s)	413, 512
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	247, 250, 550
ApoI	RAATTY	3 cut(s)	438, 469, 559
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspA2I	CCTAGG	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	133, 193
AvaII	GGWCC	1 cut(s)	286
AvrII	CCTAGG	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	650
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbvI	GCAGC	3 cut(s)	237, 259, 537
BccI	CCATC	2 cut(s)	460, 659
BcoDI	GTCTC	3 cut(s)	68, 392, 514
BfaI	CTAG	3 cut(s)	6, 59, 254
BfmI	CTRYAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	3 cut(s)	248, 251, 551
BlnI	CCTAGG	1 cut(s)	58
BlsI	GCNGC	3 cut(s)	249, 252, 552
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	649
BmsI	GCATC	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	58, 662
BsaWI	WCCGGW	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	182, 396
BseDI	CCNNGG	2 cut(s)	58, 662
BseGI	GGATG	2 cut(s)	178, 232
BseNI	ACTGG	2 cut(s)	182, 396
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	237, 259, 537
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	204, 224
BsmAI	GTCTC	3 cut(s)	68, 392, 514
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	650
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	649
BspMAI	CTGCAG	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	182, 396
BssECI	CCNNGG	2 cut(s)	58, 662
BssT1I	CCWWGG	2 cut(s)	58, 662
Bst4CI	ACNGT	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	178, 232
BstMAI	GTCTC	3 cut(s)	68, 392, 514
BstSFI	CTRYAG	1 cut(s)	551
BstV1I	GCAGC	3 cut(s)	237, 259, 537
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	178, 232
BveI	ACCTGC	1 cut(s)	228
CaiI	CAGNNNCTG	2 cut(s)	413, 512
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	2 cut(s)	322, 690
CviJI	RGCY	7 cut(s)	5, 160, 210, 250, 382, 534, 648
CviKI_1	RGCY	7 cut(s)	5, 160, 210, 250, 382, 534, 648
DdeI	CTNAG	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	58, 662
Eco24I	GRGCYC	1 cut(s)	650
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	58, 662
EcoT38I	GRGCYC	1 cut(s)	650
ErhI	CCWWGG	2 cut(s)	58, 662
FaeI	CATG	2 cut(s)	325, 693
FaiI	YATR	3 cut(s)	323, 596, 691
FatI	CATG	2 cut(s)	321, 689
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	248, 251, 551
FokI	GGATG	2 cut(s)	185, 239
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	3 cut(s)	248, 251, 551
FspBI	CTAG	3 cut(s)	6, 59, 254
GluI	GCNGC	3 cut(s)	248, 251, 551
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	204, 224
Hin1II	CATG	2 cut(s)	325, 693
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	196, 400, 446
HpaII	CCGG	2 cut(s)	204, 224
HphI	GGTGA	2 cut(s)	133, 193
Hpy166II	GTNNAC	2 cut(s)	79, 319
Hpy188I	TCNGA	7 cut(s)	188, 286, 457, 496, 514, 624, 672
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	79, 319
Hpy99I	CGWCG	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	553
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	325, 693
LmnI	GCTCC	3 cut(s)	141, 232, 653
LpnPI	CCDG	7 cut(s)	146, 195, 217, 233, 237, 302, 377
Lsp1109I	GCAGC	3 cut(s)	237, 259, 537
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	6, 59, 254
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	106, 425
MboII	GAAGA	7 cut(s)	85, 300, 533, 536, 539, 623, 626
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	8 cut(s)	14, 48, 111, 304, 326, 438, 469, 559
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	3 cut(s)	166, 264, 336
MnlI	CCTC	6 cut(s)	37, 131, 149, 200, 545, 574
MslI	CAYNNNNRTG	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	2 cut(s)	204, 224
NlaIII	CATG	2 cut(s)	325, 693
NlaIV	GGNNCC	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	196, 446
PkrI	GCNGC	3 cut(s)	249, 252, 552
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	555
PstNI	CAGNNNCTG	2 cut(s)	413, 512
PvuII	CAGCTG	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	641
SalI	GTCGAC	1 cut(s)	317
SatI	GCNGC	3 cut(s)	248, 251, 551
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	7 cut(s)	64, 162, 222, 252, 318, 585, 668
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	551
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	641
Sse9I	AATT	8 cut(s)	14, 48, 111, 304, 326, 438, 469, 559
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	6, 59, 254
StyI	CCWWGG	2 cut(s)	58, 662
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	318
TasI	AATT	8 cut(s)	14, 48, 111, 304, 326, 438, 469, 559
TfiI	GAWTC	2 cut(s)	196, 446
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	3 cut(s)	247, 250, 550
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	4 cut(s)	374, 534, 620, 624
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	3 cut(s)	438, 469, 559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmaJI	CCTAGG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	3 cut(s)	6, 59, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.