Rh2AG517600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002640
Physical Location & Seq
Reverse (-)
74440844 .. 74443378
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG517600.1

Sequence Viewer

Length: 705 bp
ATGGAGTTGAAAAACATACTTGAAGATCAAATGGCTACTCCTTTGTGGTTCTTCAGATTCCCACCACCATTGATTGTGGTTCTTGCTCCATTGCTTATATTGGTGGGTTTGATACTGGGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAGCATTGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTGCTTGAGAGATTAGTTGAAGAAAAAGTTGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATACTTAGTAGCGCCACAAAGTTCAACACCAGATTTGGTAGCAGAAAGTGCATGCCTTGATGACTTATCAACTAGTGAGGAGTCTGAAGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAGATTGCTCAGACGTTTCAATCTCTGACGAGGAAAGCCTCATCGAAATATCCCTCCCCGACGGATGTTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGTTTGTCACAGAAGACCATTTTCCAACAGCATACTCTATTTGAGTTCTTAGCTGAGATCAATGAGGAAGAAAATATGATTGAAATTGACATATCCATGGGCTCAATCAAGTGTTCAAGGTTTGAGATTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.26

Weight (kDa)

4.14

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 2 cut(s) 413, 517
AcuI CTGAAG 2 cut(s) 37, 420
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 526
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 9 cut(s) 10, 23, 224, 284, 339, 462, 650, 684, 698
AhlI ACTAGT 1 cut(s) 386
AluBI AGCT 2 cut(s) 620, 701
AluI AGCT 2 cut(s) 620, 701
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 441
AoxI GGCC 2 cut(s) 413, 517
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspLEI GCGC 1 cut(s) 328
BalI TGGCCA 2 cut(s) 415, 519
BanII GRGCYC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 587
BccI CCATC 2 cut(s) 143, 548
BcoDI GTCTC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 2 cut(s) 387, 407
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 239
BmcAI AGTACT 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 663
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 2 cut(s) 120, 416
Bse3DI GCAATG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 465, 612
BseNI ACTGG 2 cut(s) 120, 416
BseRI GAGGAG 1 cut(s) 407
BshFI GGCC 2 cut(s) 415, 519
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 2 cut(s) 415, 519
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 3 cut(s) 25, 433, 624
Bsp19I CCATGG 1 cut(s) 663
BspANI GGCC 2 cut(s) 415, 519
BspCNI CTCAG 2 cut(s) 464, 613
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 441
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 89
BsrI ACTGG 2 cut(s) 120, 416
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 3 cut(s) 25, 433, 624
BssT1I CCWWGG 1 cut(s) 663
Bst6I CTCTTC 1 cut(s) 528
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 4 cut(s) 319, 451, 616, 621
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 1 cut(s) 512
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 3 cut(s) 28, 436, 627
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 3 cut(s) 25, 433, 624
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 2 cut(s) 186, 369
BstSFI CTRYAG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 587
BsuRI GGCC 2 cut(s) 415, 519
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 1 cut(s) 512
Cac8I GCNNGC 1 cut(s) 367
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 404
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 4 cut(s) 183, 366, 521, 664
CviJI RGCY 9 cut(s) 35, 120, 308, 415, 480, 519, 620, 669, 701
CviKI_1 RGCY 9 cut(s) 35, 120, 308, 415, 480, 519, 620, 669, 701
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 4 cut(s) 319, 451, 616, 621
DpnI GATC 3 cut(s) 27, 435, 626
DpnII GATC 3 cut(s) 25, 433, 624
EaeI YGGCCR 2 cut(s) 413, 517
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 671
Eco57I CTGAAG 2 cut(s) 37, 420
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 671
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 4 cut(s) 186, 369, 524, 667
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 4 cut(s) 182, 365, 520, 663
FokI GGATG 1 cut(s) 519
FriOI GRGCYC 1 cut(s) 671
FspBI CTAG 2 cut(s) 387, 407
GlaI GCGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 2 cut(s) 415, 519
HhaI GCGC 1 cut(s) 328
Hin1II CATG 4 cut(s) 186, 369, 524, 667
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 4 cut(s) 57, 395, 439, 536
Hpy188I TCNGA 6 cut(s) 56, 247, 400, 438, 454, 469
Hpy188III TCNNGA 2 cut(s) 284, 443
Hpy99I CGWCG 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 2 cut(s) 365, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 4 cut(s) 319, 451, 616, 621
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 4 cut(s) 186, 369, 524, 667
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 3 cut(s) 25, 433, 624
LmnI GCTCC 2 cut(s) 91, 313
LpnPI CCDG 6 cut(s) 101, 213, 357, 397, 456, 552
MaeI CTAG 2 cut(s) 387, 407
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 573
MalI GATC 3 cut(s) 27, 435, 626
MboI GATC 3 cut(s) 25, 433, 624
MboII GAAGA 9 cut(s) 35, 43, 130, 169, 236, 542, 545, 592, 647
MhlI GDGCHC 1 cut(s) 671
MlsI TGGCCA 2 cut(s) 415, 519
MluCI AATT 1 cut(s) 651
MluNI TGGCCA 2 cut(s) 415, 519
MlyI GAGTC 3 cut(s) 404, 448, 545
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 6 cut(s) 298, 385, 466, 491, 506, 625
Mox20I TGGCCA 2 cut(s) 415, 519
MscI TGGCCA 2 cut(s) 415, 519
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 2 cut(s) 415, 519
MspCI CTTAAG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 362
NcoI CCATGG 1 cut(s) 663
NdeII GATC 3 cut(s) 25, 433, 624
NlaIII CATG 4 cut(s) 186, 369, 524, 667
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 573
NspI RCATGY 2 cut(s) 186, 369
PaeI GCATGC 1 cut(s) 369
PciI ACATGT 1 cut(s) 182
PfeI GAWTC 1 cut(s) 57
PleI GAGTC 3 cut(s) 403, 447, 544
PpsI GAGTC 3 cut(s) 403, 447, 544
PscI ACATGT 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 309
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 3 cut(s) 25, 433, 624
ScaI AGTACT 1 cut(s) 405
SchI GAGTC 3 cut(s) 404, 448, 545
SduI GDGCHC 1 cut(s) 671
SetI ASST 6 cut(s) 202, 459, 571, 622, 689, 703
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 209, 239
SmoI CTYRAG 2 cut(s) 209, 239
SpeI ACTAGT 1 cut(s) 386
SphI GCATGC 1 cut(s) 369
Sse9I AATT 1 cut(s) 651
SspMI CTAG 2 cut(s) 387, 407
StyI CCWWGG 1 cut(s) 663
TaiI ACGT 1 cut(s) 459
TaqI TCGA 1 cut(s) 486
TasI AATT 1 cut(s) 651
TatI WGTACW 1 cut(s) 403
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 1 cut(s) 573
Tsp45I GTSAC 1 cut(s) 573
TspDTI ATGAA 2 cut(s) 267, 311
TspGWI ACGGA 1 cut(s) 519
Vha464I CTTAAG 1 cut(s) 239
XceI RCATGY 2 cut(s) 186, 369
XspI CTAG 2 cut(s) 387, 407
ZrmI AGTACT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.