Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Reverse (-)

20773226 .. 20775704

Gene Structure 2479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAAGTCAGGCTTCAGAAATTCATGGAGTTGAAAAACATACTTGAGGATCAAATGGCTACTGCTTTGTGGTTCTTCAGGTTCCCACCACCATGGATGGCAGTTGTTGCTCCATTTCTTATATTGATGGGATTAATGGGCTTTGGGTTCTTCTCCATCTTCCTAACATCAATGGTATTGATTCTGTCAACTGTTTTCTTCACATTTTGTAAGCAAAAACCTGTTCTGCTTGAGAAGTTAGTTGAAGAAAAGGTTCTCATCAGGTGTGACCAATCATTCTCTCCTTGCTTGGAAGATGCATCAAGAACACAACATGATGAGGAAGAAACTGCGGCCTTACAAAAGAAGGAAGCTCAAGAAGAAGGTATGAACCCTGTTCATAATTACTTAGGAGCATCACCATGTTCACCAGATTTGATATCAGAAAGAGAATGCCTTGATCACTTGTCAACTAGTGATGAATCTGAAGTAGACTGGTCATTTGGAGACAACGCGGTTCAGAGTCCGGATTGCTCAGACGGTTCTATCTCCGATGAGGATAGCCTCATCGAAATAGCCCTGCCGGGAGGATACTATGTTGGTCATAAGGAACAAGAGTCAATCTTTAATCTGCAGCAGAAAAGGCCAGGTTTGTCACACCAGTCCATTTTCCAACAGCATACTCTATTGGAGCTCTTAGCTGAGATCAATGAGATGAATGAGGAAGAAAACTTGATCGAAATCGACTTGTCCATGGGCTCTATCAAGTGTTCAAGGTTTGAGATTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.19

Weight (kDa)

4.47

Isoelectric Point (pI)

70.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	1 cut(s)	494
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	2 cut(s)	332, 494
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	61, 486
AgsI	TTSAA	4 cut(s)	34, 245, 753, 767
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	4 cut(s)	353, 673, 680, 770
AluI	AGCT	4 cut(s)	353, 673, 680, 770
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	333, 623
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	1 cut(s)	20
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	390, 399
BanII	GRGCYC	2 cut(s)	675, 740
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	3 cut(s)	91, 121, 164
BciT130I	CCWGG	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	480
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	611
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	2 cut(s)	333, 614
BlsI	GCNGC	2 cut(s)	334, 615
Bme1390I	CCNGG	2 cut(s)	564, 627
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	564, 627
BmsI	GCATC	3 cut(s)	286, 308, 404
BpuEI	CTTGAG	3 cut(s)	65, 251, 339
BpuMI	CCSGG	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	92, 732
BsaWI	WCCGGW	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	479, 640
Bse8I	GATNNNNATC	1 cut(s)	719
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	92, 732
BseGI	GGATG	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	719
BseMII	CTCAG	2 cut(s)	528, 672
BseNI	ACTGG	2 cut(s)	479, 640
BseXI	GCAGC	1 cut(s)	625
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	335, 625
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	506, 563
BsmAI	GTCTC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	335, 625
Bsp1286I	GDGCHC	2 cut(s)	675, 740
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	4 cut(s)	49, 439, 684, 714
Bsp19I	CCATGG	2 cut(s)	92, 732
BspACI	CCGC	2 cut(s)	332, 494
BspANI	GGCC	2 cut(s)	335, 625
BspCNI	CTCAG	2 cut(s)	527, 673
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	479, 640
BssECI	CCNNGG	2 cut(s)	92, 732
BssMI	GATC	4 cut(s)	49, 439, 684, 714
BssT1I	CCWWGG	2 cut(s)	92, 732
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	2 cut(s)	193, 521
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstDEI	CTNAG	4 cut(s)	388, 514, 676, 681
BstDSI	CCRYGG	2 cut(s)	92, 732
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	494
BstKTI	GATC	4 cut(s)	52, 442, 687, 717
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	4 cut(s)	49, 439, 684, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 622
BstNI	CCWGG	1 cut(s)	627
BstSCI	CCNGG	2 cut(s)	562, 625
BstSFI	CTRYAG	1 cut(s)	611
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	625
BstXI	CCANNNNNNTGG	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	335, 625
BtgI	CCRYGG	2 cut(s)	92, 732
BtsCI	GGATG	1 cut(s)	102
CviAII	CATG	5 cut(s)	25, 93, 314, 402, 733
DdeI	CTNAG	4 cut(s)	388, 514, 676, 681
DpnI	GATC	4 cut(s)	51, 441, 686, 716
DpnII	GATC	4 cut(s)	49, 439, 684, 714
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	2 cut(s)	92, 732
Eco24I	GRGCYC	2 cut(s)	675, 740
Eco32I	GATATC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	673
Eco57I	CTGAAG	2 cut(s)	61, 486
EcoICRI	GAGCTC	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	625
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	92, 732
EcoT22I	ATGCAT	1 cut(s)	301
EcoT38I	GRGCYC	2 cut(s)	675, 740
ErhI	CCWWGG	2 cut(s)	92, 732
FaeI	CATG	5 cut(s)	28, 96, 317, 405, 736
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	5 cut(s)	24, 92, 313, 401, 732
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	333, 614
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	2 cut(s)	675, 740
Fsp4HI	GCNGC	2 cut(s)	333, 614
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	2 cut(s)	333, 614
HaeIII	GGCC	2 cut(s)	335, 625
HapII	CCGG	2 cut(s)	506, 563
Hin1II	CATG	5 cut(s)	28, 96, 317, 405, 736
HincII	GTYRAC	2 cut(s)	189, 450
HindII	GTYRAC	2 cut(s)	189, 450
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	4 cut(s)	181, 461, 502, 596
HpaII	CCGG	2 cut(s)	506, 563
HphI	GGTGA	2 cut(s)	390, 399
Hpy166II	GTNNAC	4 cut(s)	189, 407, 450, 472
Hpy188I	TCNGA	6 cut(s)	18, 424, 466, 501, 517, 532
Hpy188III	TCNNGA	3 cut(s)	303, 356, 506
Hpy8I	GTNNAC	4 cut(s)	189, 407, 450, 472
HpyAV	CCTTC	2 cut(s)	340, 356
HpyCH4III	ACNGT	2 cut(s)	193, 521
HpyCH4V	TGCA	2 cut(s)	299, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 622
HpyF3I	CTNAG	4 cut(s)	388, 514, 676, 681
Hsp92II	CATG	5 cut(s)	28, 96, 317, 405, 736
Kpn2I	TCCGGA	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	49, 439, 684, 714
LmnI	GCTCC	3 cut(s)	115, 392, 670
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	3 cut(s)	286, 308, 404
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	266, 633
MalI	GATC	4 cut(s)	51, 441, 686, 716
MboI	GATC	4 cut(s)	49, 439, 684, 714
MboII	GAAGA	9 cut(s)	67, 142, 151, 190, 257, 305, 335, 371, 716
MhlI	GDGCHC	2 cut(s)	675, 740
MluCI	AATT	2 cut(s)	20, 382
MlyI	GAGTC	2 cut(s)	511, 605
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	6 cut(s)	40, 313, 529, 554, 560, 694
Mph1103I	ATGCAT	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	134, 606
MslI	CAYNNNNRTG	2 cut(s)	91, 400
MspI	CCGG	2 cut(s)	506, 563
MspR9I	CCNGG	2 cut(s)	564, 627
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	107, 622
NciI	CCSGG	1 cut(s)	564
NcoI	CCATGG	2 cut(s)	92, 732
NdeII	GATC	4 cut(s)	49, 439, 684, 714
NlaIII	CATG	5 cut(s)	28, 96, 317, 405, 736
NlaIV	GGNNCC	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	266, 633
NsiI	ATGCAT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	181, 461
PkrI	GCNGC	2 cut(s)	334, 615
PleI	GAGTC	2 cut(s)	510, 604
PpsI	GAGTC	2 cut(s)	510, 604
PshBI	ATTAAT	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	615
RseI	CAYNNNNRTG	2 cut(s)	91, 400
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	134, 606
SatI	GCNGC	2 cut(s)	333, 614
Sau3AI	GATC	4 cut(s)	49, 439, 684, 714
SchI	GAGTC	2 cut(s)	511, 605
ScrFI	CCNGG	2 cut(s)	564, 627
SduI	GDGCHC	2 cut(s)	675, 740
SfaNI	GCATC	3 cut(s)	286, 308, 404
SfcI	CTRYAG	1 cut(s)	611
SmiMI	CAYNNNNRTG	2 cut(s)	91, 400
SmlI	CTYRAG	3 cut(s)	44, 230, 354
SmoI	CTYRAG	3 cut(s)	44, 230, 354
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	2 cut(s)	20, 382
SsiI	CCGC	2 cut(s)	332, 494
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	2 cut(s)	562, 625
StyI	CCWWGG	2 cut(s)	92, 732
TaaI	ACNGT	2 cut(s)	193, 521
TaqI	TCGA	3 cut(s)	549, 717, 723
TasI	AATT	2 cut(s)	20, 382
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	181, 461
Tru1I	TTAA	2 cut(s)	134, 606
Tru9I	TTAA	2 cut(s)	134, 606
TseFI	GTSAC	2 cut(s)	266, 633
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	2 cut(s)	266, 633
TspDTI	ATGAA	6 cut(s)	13, 17, 368, 383, 474, 710
VspI	ATTAAT	1 cut(s)	134
XapI	RAATTY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.