Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Reverse (-)

61734940 .. 61737546

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGGTGAAGCACGGGCTCCACCGAAACAGAGCCGCCAGATCTCATTCCCTACTGCGGCTTTTGTGGTTCTTCATGGAGTTGAAAAACATACTTGAAGATCAAATGGCTACTCCTTTGTGGTACTTCAGATTCCCACCACCATTGATTGTGGTTCTTGCTCCATTGCTTATATTGGTGGGTTTGATACTGGGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAACAATGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTGCTTGAGAGATTAGTTGAAGAAAAAGTTGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATACTTGGTAGCGGCACAAAGTTCAACACCAGATTTGGTAGTAGAAAGTGCATGCCTTGATGACTTATCAACTAGTGAGGAGTCTGAAGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAGATTGCTCAGACGGTTCAATCTCTGACGAGAAAAGCCTCATCAAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACGAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGTTTGTCACAGAAGGCCATTTTCCAACAGCATACTTTATTTGAGTTCTTAGCTGAGATCAATAAGGAAGAAAATATGATTGAAATTGACATATCCATGGGCTCAATCAAGTGCTCAAGGTTTGAGATTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.31

Weight (kDa)

4.63

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 36, 58, 401
AclWI	GGATC	1 cut(s)	516
AcoI	YGGCCR	2 cut(s)	488, 592
AcuI	CTGAAG	2 cut(s)	112, 495
AfaI	GTAC	2 cut(s)	125, 480
AfiI	CCNNNNNNNGG	2 cut(s)	57, 601
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	8 cut(s)	85, 98, 299, 359, 414, 537, 725, 773
AhlI	ACTAGT	1 cut(s)	461
AluBI	AGCT	2 cut(s)	695, 776
AluI	AGCT	2 cut(s)	695, 776
Alw21I	GWGCWC	1 cut(s)	758
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	516
AoxI	GGCC	3 cut(s)	488, 592, 657
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AsuHPI	GGTGA	1 cut(s)	19
BalI	TGGCCA	2 cut(s)	490, 594
BanII	GRGCYC	2 cut(s)	21, 746
Bbv12I	GWGCWC	1 cut(s)	758
BccI	CCATC	2 cut(s)	218, 623
BcoDI	GTCTC	1 cut(s)	492
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	462, 482
BfrI	CTTAAG	1 cut(s)	314
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	3 cut(s)	36, 59, 402
BlsI	GCNGC	3 cut(s)	37, 60, 403
BmcAI	AGTACT	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	20, 384
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	305, 742
BsaJI	CCNNGG	1 cut(s)	738
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 601
Bse1I	ACTGG	2 cut(s)	195, 491
Bse3DI	GCAATG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	57, 601
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	540, 687
BseNI	ACTGG	2 cut(s)	195, 491
BseRI	GAGGAG	1 cut(s)	482
BshFI	GGCC	3 cut(s)	490, 594, 659
BsiHKAI	GWGCWC	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	57, 601
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	490, 594, 659
Bsp1286I	GDGCHC	3 cut(s)	21, 746, 758
Bsp143I	GATC	4 cut(s)	41, 100, 508, 699
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	4 cut(s)	5, 36, 58, 401
BspANI	GGCC	3 cut(s)	490, 594, 659
BspCNI	CTCAG	2 cut(s)	539, 688
BspLI	GGNNCC	2 cut(s)	20, 384
BspPI	GGATC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	195, 491
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	4 cut(s)	41, 100, 508, 699
BssT1I	CCWWGG	1 cut(s)	738
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	1 cut(s)	603
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	526, 691, 696
BstDSI	CCRYGG	1 cut(s)	738
BstKTI	GATC	4 cut(s)	44, 103, 511, 702
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	4 cut(s)	41, 100, 508, 699
BstNSI	RCATGY	2 cut(s)	261, 444
BstX2I	RGATCY	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	490, 594, 659
BtgI	CCRYGG	1 cut(s)	738
Cac8I	GCNNGC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	124, 479
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	5 cut(s)	76, 258, 441, 596, 739
CviQI	GTAC	2 cut(s)	124, 479
DdeI	CTNAG	3 cut(s)	526, 691, 696
DpnI	GATC	4 cut(s)	43, 102, 510, 701
DpnII	GATC	4 cut(s)	41, 100, 508, 699
EaeI	YGGCCR	2 cut(s)	488, 592
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	2 cut(s)	21, 746
Eco57I	CTGAAG	2 cut(s)	112, 495
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	2 cut(s)	21, 746
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	5 cut(s)	79, 261, 444, 599, 742
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	5 cut(s)	75, 257, 440, 595, 738
Fnu4HI	GCNGC	3 cut(s)	36, 59, 402
FriOI	GRGCYC	2 cut(s)	21, 746
Fsp4HI	GCNGC	3 cut(s)	36, 59, 402
FspBI	CTAG	2 cut(s)	462, 482
GluI	GCNGC	3 cut(s)	36, 59, 402
HaeIII	GGCC	3 cut(s)	490, 594, 659
Hin1II	CATG	5 cut(s)	79, 261, 444, 599, 742
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	4 cut(s)	132, 470, 514, 611
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	6 cut(s)	131, 322, 475, 513, 529, 544
Hpy188III	TCNNGA	2 cut(s)	359, 518
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	649
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4V	TGCA	2 cut(s)	440, 628
HpyF3I	CTNAG	3 cut(s)	526, 691, 696
Hsp92II	CATG	5 cut(s)	79, 261, 444, 599, 742
Kzo9I	GATC	4 cut(s)	41, 100, 508, 699
LmnI	GCTCC	3 cut(s)	24, 166, 388
LpnPI	CCDG	7 cut(s)	52, 176, 288, 432, 472, 531, 627
MaeI	CTAG	2 cut(s)	462, 482
MaeIII	GTNAC	1 cut(s)	648
MalI	GATC	4 cut(s)	43, 102, 510, 701
MboI	GATC	4 cut(s)	41, 100, 508, 699
MboII	GAAGA	8 cut(s)	64, 110, 205, 244, 311, 617, 620, 722
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	3 cut(s)	21, 746, 758
MlsI	TGGCCA	2 cut(s)	490, 594
MluCI	AATT	1 cut(s)	726
MluNI	TGGCCA	2 cut(s)	490, 594
MlyI	GAGTC	3 cut(s)	479, 523, 620
MmeI	TCCRAC	1 cut(s)	691
MnlI	CCTC	5 cut(s)	373, 460, 566, 581, 595
Mox20I	TGGCCA	2 cut(s)	490, 594
MscI	TGGCCA	2 cut(s)	490, 594
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	737
Msp20I	TGGCCA	2 cut(s)	490, 594
MspCI	CTTAAG	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	4 cut(s)	41, 100, 508, 699
NlaIII	CATG	5 cut(s)	79, 261, 444, 599, 742
NlaIV	GGNNCC	2 cut(s)	20, 384
NmuCI	GTSAC	1 cut(s)	648
NspI	RCATGY	2 cut(s)	261, 444
PaeI	GCATGC	1 cut(s)	444
PciI	ACATGT	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	37, 60, 403
PleI	GAGTC	3 cut(s)	478, 522, 619
PpsI	GAGTC	3 cut(s)	478, 522, 619
PscI	ACATGT	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	20, 384
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	2 cut(s)	125, 480
RsaNI	GTAC	2 cut(s)	124, 479
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	36, 59, 402
Sau3AI	GATC	4 cut(s)	41, 100, 508, 699
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	3 cut(s)	479, 523, 620
SduI	GDGCHC	3 cut(s)	21, 746, 758
SetI	ASST	5 cut(s)	277, 646, 697, 764, 778
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	3 cut(s)	284, 314, 757
SmoI	CTYRAG	3 cut(s)	284, 314, 757
SpeI	ACTAGT	1 cut(s)	461
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	1 cut(s)	726
SsiI	CCGC	4 cut(s)	5, 36, 58, 401
SspMI	CTAG	2 cut(s)	462, 482
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	1 cut(s)	533
TasI	AATT	1 cut(s)	726
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	3 cut(s)	38, 61, 404
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	648
Tsp45I	GTSAC	1 cut(s)	648
TspDTI	ATGAA	3 cut(s)	64, 342, 386
TspGWI	ACGGA	1 cut(s)	594
Vha464I	CTTAAG	1 cut(s)	314
XceI	RCATGY	2 cut(s)	261, 444
XspI	CTAG	2 cut(s)	462, 482
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.