Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Reverse (-)

58537824 .. 58538528

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG360200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGTTGAAAAACATACTTGAAGATCAAATGGCTACTCCTTTGTGGTACTTCAGATTCCCACCACCATTGATTGTGGTTCTTGCTCCATTGCTTATATTGGTGGGTTTGATACTGGGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAACAATGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTGCTTGAGAGATTAGTTGAAGAAAAAGTTGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATACTTGGTAGCGGCACAAAGTTCAACACCAGATTTGGTAGTAGAAAGTGCATGCCTTGATGACTTATCAACTAGTGAGGAGTCTGAAGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAGATTGCTCAGACGGTTCAATCTCTGACGAGAAAAGCCTCATCGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACGAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGTTTGTCACAGAAGGCCATTTTCCAACAGCATACTTTATTTGAGTTCTTAGCTGAGATCAATAAGGAAGAAAATATGATTGAAATTGACATATCCATGGGCTCAATCAAGTGCTCAAGGTTTGAGATTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.31

Weight (kDa)

4.2

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	2 cut(s)	413, 517
AcuI	CTGAAG	2 cut(s)	37, 420
AfaI	GTAC	2 cut(s)	50, 405
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	8 cut(s)	10, 23, 224, 284, 339, 462, 650, 698
AhlI	ACTAGT	1 cut(s)	386
AluBI	AGCT	2 cut(s)	620, 701
AluI	AGCT	2 cut(s)	620, 701
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	3 cut(s)	413, 517, 582
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
BalI	TGGCCA	2 cut(s)	415, 519
BanII	GRGCYC	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	683
BccI	CCATC	2 cut(s)	143, 548
BcoDI	GTCTC	1 cut(s)	417
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	2 cut(s)	387, 407
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmcAI	AGTACT	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	125
BmuI	ACTGGG	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	230, 667
BsaJI	CCNNGG	1 cut(s)	663
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	2 cut(s)	120, 416
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	465, 612
BseNI	ACTGG	2 cut(s)	120, 416
BseRI	GAGGAG	1 cut(s)	407
BshFI	GGCC	3 cut(s)	415, 519, 584
BsiHKAI	GWGCWC	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	417
BsnI	GGCC	3 cut(s)	415, 519, 584
Bsp1286I	GDGCHC	2 cut(s)	671, 683
Bsp143I	GATC	3 cut(s)	25, 433, 624
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	3 cut(s)	415, 519, 584
BspCNI	CTCAG	2 cut(s)	464, 613
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	441
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	120, 416
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	3 cut(s)	25, 433, 624
BssT1I	CCWWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	528
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	451, 616, 621
BstDSI	CCRYGG	1 cut(s)	663
BstKTI	GATC	3 cut(s)	28, 436, 627
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	3 cut(s)	25, 433, 624
BstNSI	RCATGY	2 cut(s)	186, 369
BstXI	CCANNNNNNTGG	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	415, 519, 584
BtgI	CCRYGG	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	49, 404
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	4 cut(s)	183, 366, 521, 664
CviQI	GTAC	2 cut(s)	49, 404
DdeI	CTNAG	3 cut(s)	451, 616, 621
DpnI	GATC	3 cut(s)	27, 435, 626
DpnII	GATC	3 cut(s)	25, 433, 624
EaeI	YGGCCR	2 cut(s)	413, 517
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	37, 420
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	4 cut(s)	186, 369, 524, 667
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	4 cut(s)	182, 365, 520, 663
Fnu4HI	GCNGC	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	671
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	387, 407
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	3 cut(s)	415, 519, 584
Hin1II	CATG	4 cut(s)	186, 369, 524, 667
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	4 cut(s)	57, 395, 439, 536
Hpy188I	TCNGA	6 cut(s)	56, 247, 400, 438, 454, 469
Hpy188III	TCNNGA	2 cut(s)	284, 443
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	2 cut(s)	365, 553
HpyF3I	CTNAG	3 cut(s)	451, 616, 621
Hsp92II	CATG	4 cut(s)	186, 369, 524, 667
Kzo9I	GATC	3 cut(s)	25, 433, 624
LmnI	GCTCC	2 cut(s)	91, 313
LpnPI	CCDG	6 cut(s)	101, 213, 357, 397, 456, 552
MaeI	CTAG	2 cut(s)	387, 407
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	3 cut(s)	27, 435, 626
MboI	GATC	3 cut(s)	25, 433, 624
MboII	GAAGA	7 cut(s)	35, 130, 169, 236, 542, 545, 647
MhlI	GDGCHC	2 cut(s)	671, 683
MlsI	TGGCCA	2 cut(s)	415, 519
MluCI	AATT	1 cut(s)	651
MluNI	TGGCCA	2 cut(s)	415, 519
MlyI	GAGTC	3 cut(s)	404, 448, 545
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	5 cut(s)	298, 385, 491, 506, 520
Mox20I	TGGCCA	2 cut(s)	415, 519
MscI	TGGCCA	2 cut(s)	415, 519
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	2 cut(s)	415, 519
MspCI	CTTAAG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	3 cut(s)	25, 433, 624
NlaIII	CATG	4 cut(s)	186, 369, 524, 667
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	573
NspI	RCATGY	2 cut(s)	186, 369
PaeI	GCATGC	1 cut(s)	369
PciI	ACATGT	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	3 cut(s)	403, 447, 544
PpsI	GAGTC	3 cut(s)	403, 447, 544
PscI	ACATGT	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	309
RsaI	GTAC	2 cut(s)	50, 405
RsaNI	GTAC	2 cut(s)	49, 404
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	25, 433, 624
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	3 cut(s)	404, 448, 545
SduI	GDGCHC	2 cut(s)	671, 683
SetI	ASST	5 cut(s)	202, 571, 622, 689, 703
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	3 cut(s)	209, 239, 682
SmoI	CTYRAG	3 cut(s)	209, 239, 682
SpeI	ACTAGT	1 cut(s)	386
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	1 cut(s)	651
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	2 cut(s)	387, 407
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	486
TasI	AATT	1 cut(s)	651
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	573
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	267, 311
TspGWI	ACGGA	1 cut(s)	519
Vha464I	CTTAAG	1 cut(s)	239
XceI	RCATGY	2 cut(s)	186, 369
XspI	CTAG	2 cut(s)	387, 407
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.