Rh7CG276300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002640
Physical Location & Seq
Forward (+)
27701989 .. 27712614
10626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG276300.1

Sequence Viewer

Length: 771 bp
ATGGCTACTCCTTTGTGGTTCTTCAGATTCCCACCACCATTGATTGTGGTTCTTGCTCCATTGCTTATATTGGTGGGTTTGATACTTGGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAACATTGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTGCTTGAGAGATTAGTTGAAGAAAAAGTTGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATACTTGGTAGCGGCACAAAGTTCAACACCAGATTTGGTAGTAGAAAGTGCATGCCTTGATGACTTATCAACTAGTGAGGAGTCTGAAGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAGATTGCTTAGACGGTTCAATCTCTGACGAGAAAAGCCTCATCAAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGTCCTCAATGCGTGTTTTCTTGTGTGAACGAGCATAGGTCGCTGCCTAAACAAAAGTTTACTTGCTGCCTAGCATTGGATGGTGTCAATGTACTTGCCTCTGGTTTTGAGGCAGATGAAAAGGTTAAGATAAAGAACTTAGTAACATCAATGGGGGGAGTTTTACATACTAAAACATCTTTGGATGTTAGCTTTGTCATTGCGAAGAATGTCTTGGCTGCAAAATACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.2

Weight (kDa)

4.79

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 296
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 2 cut(s) 383, 487
AcuI CTGAAG 2 cut(s) 7, 390
AfaI GTAC 2 cut(s) 375, 630
AfiI CCNNNNNNNGG 2 cut(s) 496, 613
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 4 cut(s) 194, 254, 309, 432
AhlI ACTAGT 1 cut(s) 356
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 1 cut(s) 729
AluI AGCT 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 411
AoxI GGCC 2 cut(s) 383, 487
ApeKI GCWGC 3 cut(s) 580, 603, 755
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspS9I GGNCC 1 cut(s) 539
AvaII GGWCC 1 cut(s) 539
BalI TGGCCA 2 cut(s) 385, 489
BbvI GCAGC 3 cut(s) 567, 590, 742
BccI CCATC 3 cut(s) 113, 518, 611
BcoDI GTCTC 1 cut(s) 387
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 3 cut(s) 357, 377, 608
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 4 cut(s) 297, 581, 604, 756
BlsI GCNGC 4 cut(s) 298, 582, 605, 757
BmcAI AGTACT 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 613
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 2 cut(s) 59, 735
BseGI GGATG 2 cut(s) 622, 727
BseLI CCNNNNNNNGG 2 cut(s) 496, 613
BseMI GCAATG 2 cut(s) 59, 735
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 3 cut(s) 567, 590, 742
BshFI GGCC 2 cut(s) 385, 489
BslI CCNNNNNNNGG 2 cut(s) 496, 613
BsmAI GTCTC 1 cut(s) 387
BsnI GGCC 2 cut(s) 385, 489
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 1 cut(s) 296
BspANI GGCC 2 cut(s) 385, 489
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 59, 735
BsrI ACTGG 1 cut(s) 386
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 498
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 421, 676
BstF5I GGATG 2 cut(s) 622, 727
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 577
BstNSI RCATGY 2 cut(s) 156, 339
BstV1I GCAGC 3 cut(s) 567, 590, 742
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 2 cut(s) 385, 489
BtsCI GGATG 2 cut(s) 622, 727
Cac8I GCNNGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 539
Csp6I GTAC 2 cut(s) 374, 629
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 3 cut(s) 153, 336, 491
CviJI RGCY 8 cut(s) 5, 90, 278, 385, 450, 489, 729, 755
CviKI_1 RGCY 8 cut(s) 5, 90, 278, 385, 450, 489, 729, 755
CviQI GTAC 2 cut(s) 374, 629
DdeI CTNAG 2 cut(s) 421, 676
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 383, 487
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 539
Eco57I CTGAAG 2 cut(s) 7, 390
EcoO109I RGGNCCY 1 cut(s) 539
FaeI CATG 3 cut(s) 156, 339, 494
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 734, 766
FatI CATG 3 cut(s) 152, 335, 490
Fnu4HI GCNGC 4 cut(s) 297, 581, 604, 756
FokI GGATG 2 cut(s) 629, 734
Fsp4HI GCNGC 4 cut(s) 297, 581, 604, 756
FspBI CTAG 3 cut(s) 357, 377, 608
GluI GCNGC 4 cut(s) 297, 581, 604, 756
HaeIII GGCC 2 cut(s) 385, 489
Hin1II CATG 3 cut(s) 156, 339, 494
HinfI GANTC 4 cut(s) 27, 365, 409, 506
Hpy166II GTNNAC 2 cut(s) 565, 597
Hpy188I TCNGA 5 cut(s) 26, 217, 370, 408, 439
Hpy188III TCNNGA 2 cut(s) 254, 413
Hpy8I GTNNAC 2 cut(s) 565, 597
Hpy99I CGWCG 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 335, 523, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 577
HpyF3I CTNAG 2 cut(s) 421, 676
Hsp92II CATG 3 cut(s) 156, 339, 494
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 61, 283
LpnPI CCDG 6 cut(s) 183, 327, 367, 426, 522, 624
Lsp1109I GCAGC 3 cut(s) 567, 590, 742
MaeI CTAG 3 cut(s) 357, 377, 608
MaeIII GTNAC 1 cut(s) 679
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 7 cut(s) 13, 100, 139, 206, 512, 515, 754
MlsI TGGCCA 2 cut(s) 385, 489
MluNI TGGCCA 2 cut(s) 385, 489
MlyI GAGTC 3 cut(s) 374, 418, 515
MnlI CCTC 7 cut(s) 268, 355, 461, 476, 552, 640, 646
Mox20I TGGCCA 2 cut(s) 385, 489
MscI TGGCCA 2 cut(s) 385, 489
MseI TTAA 2 cut(s) 210, 663
Msp20I TGGCCA 2 cut(s) 385, 489
MspCI CTTAAG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 577
NdeII GATC 1 cut(s) 403
NlaIII CATG 3 cut(s) 156, 339, 494
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 2 cut(s) 156, 339
PaeI GCATGC 1 cut(s) 339
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 4 cut(s) 298, 582, 605, 757
PleI GAGTC 3 cut(s) 373, 417, 514
PpsI GAGTC 3 cut(s) 373, 417, 514
PpuMI RGGWCCY 1 cut(s) 539
PscI ACATGT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 539
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 539
PspPPI RGGWCCY 1 cut(s) 539
RsaI GTAC 2 cut(s) 375, 630
RsaNI GTAC 2 cut(s) 374, 629
SaqAI TTAA 2 cut(s) 210, 663
SatI GCNGC 4 cut(s) 297, 581, 604, 756
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 539
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 3 cut(s) 374, 418, 515
SetI ASST 5 cut(s) 172, 541, 578, 663, 731
SinI GGWCC 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 179, 209
SmoI CTYRAG 2 cut(s) 179, 209
SpeI ACTAGT 1 cut(s) 356
SphI GCATGC 1 cut(s) 339
SsiI CCGC 1 cut(s) 296
SspMI CTAG 3 cut(s) 357, 377, 608
TaaI ACNGT 1 cut(s) 428
TatI WGTACW 2 cut(s) 373, 628
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 210, 663
Tru9I TTAA 2 cut(s) 210, 663
TseI GCWGC 3 cut(s) 580, 603, 755
TspDTI ATGAA 3 cut(s) 237, 281, 669
TspGWI ACGGA 1 cut(s) 489
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 539
XceI RCATGY 2 cut(s) 156, 339
XspI CTAG 3 cut(s) 357, 377, 608
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.