Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Forward (+)

3800095 .. 3800754

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCTACGCCTTTGTGGTTCTTCAGATTCCCACCGCCATTGTTGCTTGTTCTTGCTCCATTCCTTGTATTGGTTGGATTAATGGGGTTTGGATTCCTCTCCATCTTCCTAACATCTATGGTGCTGATTTTCTCGACTGTTGTTTTCACATATTCCAAGAAAAAACCACTTCATCGGGTTGAGAATAAGTTAGCTGAAGAAAAAATGTTCATTCCTTGCTTGGAAGAAGTATCAAAACATCAAAGTGCTTCCCCACAAGAGAAGGATGCTCAAGAAGCACCACTGAGCTCACCAGATTTGATATCAGAAAGTGAATGCGTTGATCACCTATCAACCAGTGATGATTCTGAATTAGTAGACTGGTCGTTTGGAGAAAATGTGGCTCGGAGCCCCGATTTCTCAGACGGCTCAATTTCCGACGAGGATAGCCTCATCGAAATAGCCCTCCCGGGCGGATACTATGTCGATCACCAGGAGCATGACTCAGTGTTTAACCTGCAGCAGAAAATGCCAGGTTTGTCACACCAGTCCATTTTTAAGCAGCATACTCTATTGGAGCTCTTGGCTGAGATCGATCAGATGAATGAGGAAGAAAATTTGTTCGAAATCGACTTATCCATGGGATCCATCAAGTGTTCAAGGTTTGAGATAGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.7

Weight (kDa)

4.44

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	2 cut(s)	35, 453
AclWI	GGATC	2 cut(s)	618, 631
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	2 cut(s)	7, 216
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	639
AjnI	CCWGG	2 cut(s)	471, 511
AluBI	AGCT	4 cut(s)	194, 288, 559, 656
AluI	AGCT	4 cut(s)	194, 288, 559, 656
Alw21I	GWGCWC	2 cut(s)	290, 561
AlwI	GGATC	2 cut(s)	618, 631
Ama87I	CYCGRG	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	499, 541
ApoI	RAATTY	1 cut(s)	595
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AseI	ATTAAT	1 cut(s)	80
AsuC2I	CCSGG	2 cut(s)	449, 450
AsuHPI	GGTGA	3 cut(s)	282, 317, 461
AsuII	TTCGAA	1 cut(s)	603
AvaI	CYCGRG	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	623
BanII	GRGCYC	3 cut(s)	290, 392, 561
Bbv12I	GWGCWC	2 cut(s)	290, 561
BbvI	GCAGC	2 cut(s)	511, 553
BccI	CCATC	2 cut(s)	110, 635
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	2 cut(s)	473, 513
BciVI	GTATCC	1 cut(s)	449
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	449, 450
BfmI	CTRYAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	2 cut(s)	500, 542
BlsI	GCNGC	2 cut(s)	501, 543
Bme1390I	CCNGG	4 cut(s)	449, 450, 473, 513
BmeT110I	CYCGRG	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	389, 625
BmrFI	CCNGG	4 cut(s)	449, 450, 473, 513
BmsI	GCATC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu14I	TTCGAA	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	255
BpuMI	CCSGG	2 cut(s)	449, 450
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	448, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	336, 365, 526
BseBI	CCWGG	2 cut(s)	473, 513
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	448, 618
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	4 cut(s)	275, 414, 498, 558
BseNI	ACTGG	3 cut(s)	336, 365, 526
BseXI	GCAGC	2 cut(s)	511, 553
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	290, 561
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	603
Bsp1286I	GDGCHC	3 cut(s)	290, 392, 561
Bsp143I	GATC	5 cut(s)	322, 466, 570, 574, 623
Bsp19I	CCATGG	1 cut(s)	618
BspACI	CCGC	2 cut(s)	35, 453
BspCNI	CTCAG	4 cut(s)	276, 413, 497, 559
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	389, 625
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	618, 631
BspT104I	TTCGAA	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	336, 365, 526
BssECI	CCNNGG	2 cut(s)	448, 618
BssMI	GATC	5 cut(s)	322, 466, 570, 574, 623
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	2 cut(s)	473, 513
Bst4CI	ACNGT	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	603
BstDEI	CTNAG	4 cut(s)	284, 400, 484, 567
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	325, 469, 573, 577, 626
BstMBI	GATC	5 cut(s)	322, 466, 570, 574, 623
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 275, 508
BstNI	CCWGG	2 cut(s)	473, 513
BstSCI	CCNGG	4 cut(s)	447, 448, 471, 511
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	511, 553
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	3 cut(s)	281, 343, 492
BveI	ACCTGC	1 cut(s)	504
Cfr9I	CCCGGG	1 cut(s)	448
ClaI	ATCGAT	1 cut(s)	573
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	2 cut(s)	479, 619
DdeI	CTNAG	4 cut(s)	284, 400, 484, 567
DpnI	GATC	5 cut(s)	324, 468, 572, 576, 625
DpnII	GATC	5 cut(s)	322, 466, 570, 574, 623
EciI	GGCGGA	1 cut(s)	468
Ecl136II	GAGCTC	2 cut(s)	288, 559
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	3 cut(s)	290, 392, 561
Eco32I	GATATC	1 cut(s)	303
Eco53kI	GAGCTC	2 cut(s)	288, 559
Eco57I	CTGAAG	2 cut(s)	7, 216
Eco88I	CYCGRG	1 cut(s)	448
EcoICRI	GAGCTC	2 cut(s)	288, 559
EcoRII	CCWGG	2 cut(s)	471, 511
EcoRV	GATATC	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	3 cut(s)	290, 392, 561
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	2 cut(s)	482, 622
FaiI	YATR	6 cut(s)	119, 151, 462, 480, 546, 620
FatI	CATG	2 cut(s)	478, 618
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	500, 542
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	3 cut(s)	290, 392, 561
Fsp4HI	GCNGC	2 cut(s)	500, 542
GluI	GCNGC	2 cut(s)	500, 542
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	2 cut(s)	482, 622
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	4 cut(s)	27, 93, 344, 482
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	3 cut(s)	282, 317, 461
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	7 cut(s)	26, 307, 349, 387, 403, 418, 579
Hpy188III	TCNNGA	2 cut(s)	133, 272
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 275, 508
HpyF3I	CTNAG	4 cut(s)	284, 400, 484, 567
Hsp92II	CATG	2 cut(s)	482, 622
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	322, 466, 570, 574, 623
LmnI	GCTCC	4 cut(s)	61, 387, 475, 556
Lsp1109I	GCAGC	2 cut(s)	511, 553
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	5 cut(s)	324, 468, 572, 576, 625
MboI	GATC	5 cut(s)	322, 466, 570, 574, 623
MboII	GAAGA	5 cut(s)	13, 97, 209, 236, 602
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	3 cut(s)	290, 392, 561
MluCI	AATT	3 cut(s)	350, 411, 595
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	2 cut(s)	55, 441
MnlI	CCTC	5 cut(s)	107, 415, 440, 455, 580
MseI	TTAA	3 cut(s)	80, 492, 537
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	4 cut(s)	449, 450, 473, 513
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	473, 513
MwoI	GCNNNNNNNGC	3 cut(s)	43, 275, 508
NciI	CCSGG	2 cut(s)	449, 450
NcoI	CCATGG	1 cut(s)	618
NdeII	GATC	5 cut(s)	322, 466, 570, 574, 623
NlaIII	CATG	2 cut(s)	482, 622
NlaIV	GGNNCC	2 cut(s)	389, 625
NmuCI	GTSAC	1 cut(s)	519
NspV	TTCGAA	1 cut(s)	603
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	27, 93, 344
PkrI	GCNGC	2 cut(s)	501, 543
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	80
Psp124BI	GAGCTC	2 cut(s)	290, 561
Psp6I	CCWGG	2 cut(s)	471, 511
PspGI	CCWGG	2 cut(s)	471, 511
PspN4I	GGNNCC	2 cut(s)	389, 625
PstI	CTGCAG	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	623
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	2 cut(s)	290, 561
SaqAI	TTAA	3 cut(s)	80, 492, 537
SatI	GCNGC	2 cut(s)	500, 542
Sau3AI	GATC	5 cut(s)	322, 466, 570, 574, 623
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	4 cut(s)	449, 450, 473, 513
SduI	GDGCHC	3 cut(s)	290, 392, 561
SetI	ASST	8 cut(s)	196, 290, 330, 498, 517, 561, 644, 658
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	603
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	350, 411, 595
SsiI	CCGC	2 cut(s)	35, 453
SstI	GAGCTC	2 cut(s)	290, 561
StyD4I	CCNGG	4 cut(s)	447, 448, 471, 511
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	6 cut(s)	134, 435, 465, 573, 603, 609
TasI	AATT	3 cut(s)	350, 411, 595
TfiI	GAWTC	3 cut(s)	27, 93, 344
Tru1I	TTAA	3 cut(s)	80, 492, 537
Tru9I	TTAA	3 cut(s)	80, 492, 537
TscAI	CASTG	3 cut(s)	288, 343, 492
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	2 cut(s)	499, 541
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	3 cut(s)	161, 199, 596
TspMI	CCCGGG	1 cut(s)	448
TspRI	CASTG	3 cut(s)	288, 343, 492
VspI	ATTAAT	1 cut(s)	80
XapI	RAATTY	1 cut(s)	595
XmaI	CCCGGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.