AT5G35870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002640
Physical Location & Seq
Forward (+)
14020779 .. 14021700
922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35870.1

Sequence Viewer

Length: 591 bp
ATGGTTGAAATCTTATTTCTTCTATCTTTTTTGGTGGAACTACAAAGTAATTGCTTTCATATGAATCTTGAGAGCATAAAAATGAACGAAGGGGTCATGAGTTTTATTTTATTGCGTTTTAAGAGACCAGTGTCATGGTTGTCTTTTCTTGCCCCACCACTTCTTCACATCATAGGACTTGGGTTCTCGCAAATCATCCTAACCTCAGCTGCATTGTTCTTCTCATCTTTCTTCTTCCCTCTCTCAATCCAAAAACCAAACTCCAAGGTTCAAGATCTTAGTCAACAAGACTACTTAGGAGAGACTGAACTATCATCTACGACCACTAATGATATTGTCAAAAATAATGACGAAGATGACGGGACAATCCCTGATGAGGAAAGTCTCATAGAGCTCTCCTTACCAAGCGGCCATTACATTGGCCACCACTATAGTACTATGATTGGTAAACAAGATCAAAAGATCATGTACAACAACATCCCAGATTTCAGGCTTATCCAATTATCAGCCGAGTATGAAGACGATAATCTCATCGAAATCGACATTTCCATCGGATCGATCAAGTGTTCAAGGTTCCAGATCAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.29

Weight (kDa)

4.67

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 408
AclWI GGATC 1 cut(s) 562
AcoI YGGCCR 2 cut(s) 409, 421
AfaI GTAC 2 cut(s) 436, 470
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 3 cut(s) 8, 272, 570
AluBI AGCT 2 cut(s) 209, 394
AluI AGCT 2 cut(s) 209, 394
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 3 cut(s) 118, 296, 389
AlwI GGATC 1 cut(s) 562
AoxI GGCC 2 cut(s) 409, 421
ApeKI GCWGC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 423
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 557
BcoDI GTCTC 3 cut(s) 118, 296, 389
BfmI CTRYAG 1 cut(s) 430
BglII AGATCT 1 cut(s) 274
BisI GCNGC 2 cut(s) 210, 409
BlsI GCNGC 2 cut(s) 211, 410
BmcAI AGTACT 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 575
BoxI GACNNNNGTC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 557
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 195, 477
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 2 cut(s) 411, 423
BshVI ATCGAT 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 396
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 3 cut(s) 118, 296, 389
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 2 cut(s) 411, 423
Bso31I GGTCTC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 396
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 6 cut(s) 274, 454, 462, 554, 558, 579
BspACI CCGC 1 cut(s) 408
BspANI GGCC 2 cut(s) 411, 423
BspCNI CTCAG 1 cut(s) 218
BspDI ATCGAT 1 cut(s) 557
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 575
BspPI GGATC 1 cut(s) 562
BspTNI GGTCTC 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 6 cut(s) 274, 454, 462, 554, 558, 579
BssT1I CCWWGG 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 468
BstDEI CTNAG 3 cut(s) 205, 278, 295
BstF5I GGATG 2 cut(s) 195, 477
BstKTI GATC 6 cut(s) 277, 457, 465, 557, 561, 582
BstMAI GTCTC 3 cut(s) 118, 296, 389
BstMBI GATC 6 cut(s) 274, 454, 462, 554, 558, 579
BstPAI GACNNNNGTC 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 2 cut(s) 135, 419
BstYI RGATCY 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 557
BsuRI GGCC 2 cut(s) 411, 423
BsuTUI ATCGAT 1 cut(s) 557
BtsCI GGATG 2 cut(s) 195, 477
BtsIMutI CAGTG 1 cut(s) 135
CciI TCATGA 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 557
Csp6I GTAC 2 cut(s) 435, 469
CviAII CATG 3 cut(s) 97, 135, 466
CviJI RGCY 7 cut(s) 209, 394, 411, 423, 493, 509, 587
CviKI_1 RGCY 7 cut(s) 209, 394, 411, 423, 493, 509, 587
CviQI GTAC 2 cut(s) 435, 469
DdeI CTNAG 3 cut(s) 205, 278, 295
DpnI GATC 6 cut(s) 276, 456, 464, 556, 560, 581
DpnII GATC 6 cut(s) 274, 454, 462, 554, 558, 579
EaeI YGGCCR 2 cut(s) 409, 421
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 100, 138, 469
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 96, 134, 465
FauNDI CATATG 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 210, 409
FokI GGATG 2 cut(s) 182, 464
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 210, 409
GluI GCNGC 2 cut(s) 210, 409
HaeIII GGCC 2 cut(s) 411, 423
Hin1II CATG 3 cut(s) 100, 138, 469
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HinfI GANTC 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 284, 449
Hpy188I TCNGA 1 cut(s) 554
Hpy188III TCNNGA 4 cut(s) 68, 97, 272, 577
Hpy8I GTNNAC 2 cut(s) 284, 449
HpyAV CCTTC 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 212
HpyF3I CTNAG 3 cut(s) 205, 278, 295
Hsp92II CATG 3 cut(s) 100, 138, 469
Kzo9I GATC 6 cut(s) 274, 454, 462, 554, 558, 579
LpnPI CCDG 4 cut(s) 141, 384, 475, 495
Lsp1109I GCAGC 1 cut(s) 196
MalI GATC 6 cut(s) 276, 456, 464, 556, 560, 581
MboI GATC 6 cut(s) 274, 454, 462, 554, 558, 579
MboII GAAGA 7 cut(s) 11, 155, 211, 223, 226, 365, 530
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 2 cut(s) 49, 500
MluNI TGGCCA 1 cut(s) 423
MnlI CCTC 3 cut(s) 214, 249, 370
Mox20I TGGCCA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 423
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 209
NdeI CATATG 1 cut(s) 60
NdeII GATC 6 cut(s) 274, 454, 462, 554, 558, 579
NlaIII CATG 3 cut(s) 100, 138, 469
NlaIV GGNNCC 1 cut(s) 575
NmeAIII GCCGAG 1 cut(s) 535
PagI TCATGA 1 cut(s) 96
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 211, 410
PshAI GACNNNNGTC 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 575
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 436, 470
RsaNI GTAC 2 cut(s) 435, 469
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 210, 409
Sau3AI GATC 6 cut(s) 274, 454, 462, 554, 558, 579
ScaI AGTACT 1 cut(s) 436
SduI GDGCHC 1 cut(s) 396
SetI ASST 5 cut(s) 206, 211, 270, 396, 575
SfcI CTRYAG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 49, 500
SsiI CCGC 1 cut(s) 408
SstI GAGCTC 1 cut(s) 396
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 3 cut(s) 534, 540, 557
TasI AATT 2 cut(s) 49, 500
TatI WGTACW 2 cut(s) 434, 468
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 135
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 47, 77, 98, 531
TspRI CASTG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.