Rorug05G0580200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002640
Physical Location & Seq
Forward (+)
77706899 .. 77707321
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0580200.1

Sequence Viewer

Length: 423 bp
ATGGACAACATTGATCGGATTTGCATATTCACAGGTGCTCACACATTTGGACGCGCCCAGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAACCTTCAAGTTCATAAGGGTCTACTCCAAAGCGACCAAGAGCTGTTTTCGACTAGCGGGGCTGATACCATTGACATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.47

Weight (kDa)

4.05

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 7 - 110 1.9e-23 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AccI GTMKAC 1 cut(s) 259
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 94, 245
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 2 cut(s) 280, 357
AluI AGCT 2 cut(s) 280, 357
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 2 cut(s) 206, 404
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 166
Bsa29I ATCGAT 2 cut(s) 79, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 185
BseCI ATCGAT 2 cut(s) 79, 368
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 188
BshVI ATCGAT 2 cut(s) 79, 368
BsiHKAI GWGCWC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 13, 76, 196
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 188
BspDI ATCGAT 2 cut(s) 79, 368
BspFNI CGCG 1 cut(s) 54
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 58
BssMI GATC 3 cut(s) 13, 76, 196
Bst2UI CCWGG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 16, 79, 199
BstMBI GATC 3 cut(s) 13, 76, 196
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstUI CGCG 1 cut(s) 54
Bsu15I ATCGAT 2 cut(s) 79, 368
BsuRI GGCC 1 cut(s) 188
BsuTUI ATCGAT 2 cut(s) 79, 368
BtsIMutI CAGTG 2 cut(s) 65, 72
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 56
ClaI ATCGAT 2 cut(s) 79, 368
CseI GACGC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviJI RGCY 5 cut(s) 188, 280, 299, 357, 393
CviKI_1 RGCY 5 cut(s) 188, 280, 299, 357, 393
DpnI GATC 3 cut(s) 15, 78, 198
DpnII GATC 3 cut(s) 13, 76, 196
EaeI YGGCCR 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 183
FaiI YATR 8 cut(s) 26, 85, 137, 155, 157, 252, 314, 389
FauI CCCGC 1 cut(s) 287
FauNDI CATATG 1 cut(s) 155
FblI GTMKAC 1 cut(s) 259
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 56
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 2 cut(s) 106, 365
HpaI GTTAAC 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 260, 319
Hpy188I TCNGA 2 cut(s) 18, 339
Hpy188III TCNNGA 2 cut(s) 110, 397
Hpy8I GTNNAC 2 cut(s) 260, 319
HpyAV CCTTC 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 24
HspAI GCGC 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 319
Kzo9I GATC 3 cut(s) 13, 76, 196
LpnPI CCDG 8 cut(s) 18, 71, 87, 123, 170, 197, 222, 387
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 15, 78, 198
MboI GATC 3 cut(s) 13, 76, 196
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 2 cut(s) 211, 404
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 4 cut(s) 122, 318, 333, 375
Msp20I TGGCCA 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 54
NdeI CATATG 1 cut(s) 155
NdeII GATC 3 cut(s) 13, 76, 196
NmuCI GTSAC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 167
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 407
SaqAI TTAA 4 cut(s) 122, 318, 333, 375
Sau3AI GATC 3 cut(s) 13, 76, 196
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 40
SetI ASST 8 cut(s) 37, 122, 134, 146, 211, 243, 282, 359
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 190
SsiI CCGC 1 cut(s) 294
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 183
TaqI TCGA 5 cut(s) 79, 128, 219, 287, 368
TasI AATT 1 cut(s) 190
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 4 cut(s) 122, 318, 333, 375
Tru9I TTAA 4 cut(s) 122, 318, 333, 375
TscAI CASTG 2 cut(s) 65, 79
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 2 cut(s) 65, 79
Van91I CCANNNNNTGG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.