AT2G14860

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009097
Physical Location & Seq
Reverse (-)
6387581 .. 6389668
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14860.1

Sequence Viewer

Length: 759 bp
ATGAGCAGAGCATTGTTCAGGAACGTAGCCGTCGACACCGCTCGGCTCATACGGCGGAACGCGGCGGCGTCAACAGACCAATATGGTAAGACCGGAGTTGCTCAATCGAGACCTTATTTCCGGTCACGTCAGCTTCTCGAAAGAGCAAAAGAAACAGGAGTCTCACCTTCTCCTTCTTTGGGTTTCTCTTCTTCTTCATCTCCGTCGAGGATTGGGTTCGTTGGATGGTATCTTGGTATGGTTAAATCACACCCAGTTGTGACCAAAAGTGTCACTTCCTCTCTTATTTACATTGCCGCCGACTTGTCTTCTCAGACGATTGCGAAAACTTCTTCTGAGTCTTATGACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCAACACTTCACTACTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACAACGTTTAAGAAAATGGCTATGGGACAGACGATCTACGGGCCTATTATGACTGTTATTTTCTTCTCATTGAATGCATCCCTACAAGGGGAACGCGGTTCAGTTATACTTGCCAGATTGAAAAGGGACTTACTCCCCGCGCTCTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTTATCACATTCAGATTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCATTTTCGTATGTATGGACTATCTACATGACTTACATGGCAAACCGTGAAAAACCAGTCGCAATTTCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

252

Amino Acids

28.28

Weight (kDa)

10.22

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 180 - 238 8.8e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 33
AccII CGCG 3 cut(s) 62, 552, 596
AciI CCGC 7 cut(s) 39, 55, 62, 65, 297, 552, 594
AclI AACGTT 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 179, 543, 544
AgsI TTSAA 4 cut(s) 418, 529, 577, 753
AjiI CACGTC 1 cut(s) 128
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 103, 166
AoxI GGCC 2 cut(s) 497, 620
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 395, 497
AsuHPI GGTGA 2 cut(s) 156, 364
AvaII GGWCC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 300
BccI CCATC 2 cut(s) 219, 361
BceAI ACGGC 2 cut(s) 14, 68
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 103, 166
BisI GCNGC 3 cut(s) 63, 66, 297
BlsI GCNGC 3 cut(s) 64, 67, 298
Bme18I GGWCC 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 395, 497
BmiI GGNNCC 1 cut(s) 396
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 542
BmuI ACTGGG 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 103
BsaWI WCCGGW 2 cut(s) 92, 120
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 543, 544
Bse1I ACTGG 3 cut(s) 254, 416, 740
Bse3DI GCAATG 1 cut(s) 291
BseGI GGATG 3 cut(s) 230, 372, 533
BseLI CCNNNNNNNGG 3 cut(s) 179, 543, 544
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 326, 327
BseNI ACTGG 3 cut(s) 254, 416, 740
Bsh1236I CGCG 3 cut(s) 62, 552, 596
BshFI GGCC 2 cut(s) 499, 622
BsiSI CCGG 2 cut(s) 93, 121
BslFI GGGAC 2 cut(s) 495, 596
BslI CCNNNNNNNGG 3 cut(s) 179, 543, 544
BsmAI GTCTC 2 cut(s) 103, 166
BsmFI GGGAC 2 cut(s) 495, 596
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 2 cut(s) 499, 622
Bso31I GGTCTC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 453, 489
BspACI CCGC 7 cut(s) 39, 55, 62, 65, 297, 552, 594
BspANI GGCC 2 cut(s) 499, 622
BspCNI CTCAG 2 cut(s) 325, 328
BspFNI CGCG 3 cut(s) 62, 552, 596
BspLI GGNNCC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 3 cut(s) 254, 416, 740
BssMI GATC 2 cut(s) 453, 489
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 3 cut(s) 511, 608, 731
Bst6I CTCTTC 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 312, 336
BstF5I GGATG 3 cut(s) 230, 372, 533
BstFNI CGCG 3 cut(s) 62, 552, 596
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 2 cut(s) 456, 492
BstMAI GTCTC 2 cut(s) 103, 166
BstMBI GATC 2 cut(s) 453, 489
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstUI CGCG 3 cut(s) 62, 552, 596
BstV2I GAAGAC 1 cut(s) 300
BsuRI GGCC 2 cut(s) 499, 622
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 230, 372, 533
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 395, 497
CseI GACGC 1 cut(s) 57
CviAII CATG 4 cut(s) 424, 613, 712, 721
CviJI RGCY 7 cut(s) 29, 46, 133, 476, 499, 622, 670
CviKI_1 RGCY 7 cut(s) 29, 46, 133, 476, 499, 622, 670
DdeI CTNAG 2 cut(s) 312, 336
DpnI GATC 2 cut(s) 455, 491
DpnII GATC 2 cut(s) 453, 489
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 395
EcoT22I ATGCAT 1 cut(s) 535
FaeI CATG 4 cut(s) 427, 616, 715, 724
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 2 cut(s) 495, 596
FatI CATG 4 cut(s) 423, 612, 711, 720
FauI CCCGC 1 cut(s) 601
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 63, 66, 297
FokI GGATG 3 cut(s) 237, 379, 520
Fsp4HI GCNGC 3 cut(s) 63, 66, 297
GlaI GCGC 1 cut(s) 597
GluI GCNGC 3 cut(s) 63, 66, 297
HaeIII GGCC 2 cut(s) 499, 622
HapII CCGG 2 cut(s) 93, 121
HgaI GACGC 1 cut(s) 57
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 4 cut(s) 427, 616, 715, 724
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 2 cut(s) 34, 72
HindII GTYRAC 2 cut(s) 34, 72
HinfI GANTC 4 cut(s) 159, 338, 432, 648
HpaII CCGG 2 cut(s) 93, 121
HphI GGTGA 2 cut(s) 156, 364
Hpy166II GTNNAC 2 cut(s) 34, 72
Hpy188I TCNGA 3 cut(s) 315, 337, 647
Hpy188III TCNNGA 4 cut(s) 19, 108, 137, 429
Hpy8I GTNNAC 2 cut(s) 34, 72
Hpy99I CGWCG 2 cut(s) 35, 208
HpyAV CCTTC 2 cut(s) 177, 183
HpyCH4III ACNGT 3 cut(s) 511, 608, 731
HpyCH4IV ACGT 3 cut(s) 24, 127, 461
HpyCH4V TGCA 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 312, 336
HpySE526I ACGT 3 cut(s) 24, 127, 461
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 4 cut(s) 427, 616, 715, 724
HspAI GCGC 1 cut(s) 596
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 2 cut(s) 453, 489
LpnPI CCDG 9 cut(s) 4, 106, 134, 141, 267, 397, 583, 669, 753
LweI GCATC 1 cut(s) 542
MaeII ACGT 3 cut(s) 24, 127, 461
MaeIII GTNAC 3 cut(s) 123, 259, 271
MalI GATC 2 cut(s) 455, 491
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 453, 489
MboII GAAGA 7 cut(s) 180, 183, 186, 300, 324, 511, 643
MluCI AATT 2 cut(s) 418, 747
MlyI GAGTC 3 cut(s) 168, 347, 426
MmeI TCCRAC 2 cut(s) 202, 422
MnlI CCTC 5 cut(s) 201, 289, 365, 633, 681
Mph1103I ATGCAT 1 cut(s) 535
MseI TTAA 3 cut(s) 243, 465, 603
MspI CCGG 2 cut(s) 93, 121
Mva1269I GAATGC 1 cut(s) 535
MvnI CGCG 3 cut(s) 62, 552, 596
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 2 cut(s) 453, 489
NlaIII CATG 4 cut(s) 427, 616, 715, 724
NlaIV GGNNCC 1 cut(s) 396
NmeAIII GCCGAG 1 cut(s) 22
NmuCI GTSAC 3 cut(s) 123, 259, 271
NsiI ATGCAT 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 648
PkrI GCNGC 3 cut(s) 64, 67, 298
PleI GAGTC 3 cut(s) 167, 346, 426
PpsI GAGTC 3 cut(s) 167, 346, 426
Psp1406I AACGTT 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 2 cut(s) 395, 497
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 243, 465, 603
SatI GCNGC 3 cut(s) 63, 66, 297
Sau3AI GATC 2 cut(s) 453, 489
Sau96I GGNCC 2 cut(s) 395, 497
SchI GAGTC 3 cut(s) 168, 347, 426
SetI ASST 7 cut(s) 27, 115, 130, 135, 169, 464, 758
SfaNI GCATC 1 cut(s) 542
SinI GGWCC 1 cut(s) 395
Sse9I AATT 2 cut(s) 418, 747
SsiI CCGC 7 cut(s) 39, 55, 62, 65, 297, 552, 594
TaaI ACNGT 3 cut(s) 511, 608, 731
TaiI ACGT 3 cut(s) 27, 130, 464
TaqI TCGA 4 cut(s) 33, 107, 138, 206
TasI AATT 2 cut(s) 418, 747
TauI GCSGC 3 cut(s) 65, 68, 299
TfiI GAWTC 1 cut(s) 648
Tru1I TTAA 3 cut(s) 243, 465, 603
Tru9I TTAA 3 cut(s) 243, 465, 603
TseFI GTSAC 3 cut(s) 123, 259, 271
Tsp45I GTSAC 3 cut(s) 123, 259, 271
TspDTI ATGAA 3 cut(s) 186, 412, 650
TspGWI ACGGA 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.