RchiOBHm_Chr6g0253001

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009097
Physical Location & Seq
Forward (+)
8211674 .. 8214467
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22686

Sequence Viewer

Length: 960 bp
ATGTACTTTTTACATAACAAACTCCCCCAAACTTGCCAACAAAAACCCAAAACCTCATATTCCTATATTATATATAAAAGAACAAGACACATTTCACATTGCAAAAACCCCTTTCTGTACCTAAACCCCGACACATCACACGGCCTCAGAGCGACGTTGACACCCAACCAAACCACCATGTCCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCACCGCACACCTCCGCCGGGCCTCAAGGCCCAGCTCCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTCTTCCGTAAAGCCAAAGACTACGACCTCTCTCCCCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCCACCGCCTCCACGGGGCTCGTTGGCTGGTACCTGGGCCTCGTCAAGAACCGGCCCATTCTCACCAAGAGCGTCACCGCCGCCCTCATCTACACCGCCGCCGATCTGTCCTCCCAGACTATAGCGAAATCGGATACTTATGATCCTGTGAGGACATTGCGGATGGCTGGATATGGGATGCTGCTTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTTTTCGACATTGAAGAAAATGGCTCTGGGGCAGGGACTTTATGGACCTACTATGACTGTTGTGTTCTTTTCTGTGAATGCATTTTTACAAGGTGAAAATGGTGGAGAAGTTTTTGATCGTTTAAAGCGAGACTTGGTCCCGACATTGTTAAGTGGTGTTATGTACTGGCCAGTGTGTGATTTTATCACATACAGATTCATTCCTGTCCATTTGCAGACATTAGTGAGCAATGGATTTTCATATCTATGGACCATTTATTTGACATACATGGCAAGCCTGGAGAAAGCAAGTGCAATGGCTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

319

Amino Acids

35.8

Weight (kDa)

9.94

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 244 - 304 5.1e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 432
AccII CGCG 1 cut(s) 300
AclI AACGTT 1 cut(s) 632
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 2 cut(s) 624, 818
AfaI GTAC 4 cut(s) 5, 119, 434, 815
AfiI CCNNNNNNNGG 2 cut(s) 260, 417
AgsI TTSAA 2 cut(s) 616, 664
AjnI CCWGG 2 cut(s) 435, 927
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 774
AlwI GGATC 1 cut(s) 539
AoxI GGCC 8 cut(s) 142, 262, 270, 439, 455, 593, 624, 818
ApeKI GCWGC 2 cut(s) 583, 601
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
Asp718I GGTACC 1 cut(s) 432
AspLEI GCGC 2 cut(s) 188, 302
AspS9I GGNCC 8 cut(s) 262, 271, 439, 456, 593, 695, 787, 900
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 5 cut(s) 202, 229, 457, 469, 755
AvaII GGWCC 3 cut(s) 695, 787, 900
BalI TGGCCA 2 cut(s) 626, 820
BanI GGYRCC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 423
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 570, 588
BccI CCATC 2 cut(s) 242, 559
BceAI ACGGC 2 cut(s) 157, 580
BciT130I CCWGG 2 cut(s) 437, 929
BciVI GTATCC 1 cut(s) 529
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 774
BfaI CTAG 2 cut(s) 590, 951
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 1 cut(s) 529
BisI GCNGC 6 cut(s) 399, 402, 483, 501, 584, 602
BlsI GCNGC 6 cut(s) 400, 403, 484, 502, 585, 603
Bme1390I CCNGG 3 cut(s) 261, 437, 929
Bme18I GGWCC 3 cut(s) 695, 787, 900
BmgT120I GGNCC 8 cut(s) 262, 271, 439, 456, 593, 695, 787, 900
BmiI GGNNCC 2 cut(s) 434, 789
BmrFI CCNGG 3 cut(s) 261, 437, 929
BmsI GCATC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 263, 950
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 414, 436
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 417
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 280, 821, 821
Bse3DI GCAATG 4 cut(s) 97, 557, 886, 951
BseBI CCWGG 2 cut(s) 437, 929
BseDI CCNNGG 2 cut(s) 414, 436
BseGI GGATG 2 cut(s) 570, 585
BseLI CCNNNNNNNGG 2 cut(s) 260, 417
BseMI GCAATG 4 cut(s) 97, 557, 886, 951
BseMII CTCAG 2 cut(s) 160, 182
BseNI ACTGG 3 cut(s) 280, 821, 821
BseRI GAGGAG 2 cut(s) 349, 376
BseXI GCAGC 2 cut(s) 570, 588
BseYI CCCAGC 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 8 cut(s) 144, 264, 272, 441, 457, 595, 626, 820
BshNI GGYRCC 1 cut(s) 432
BsiSI CCGG 3 cut(s) 183, 260, 454
BslFI GGGAC 2 cut(s) 699, 773
BslI CCNNNNNNNGG 2 cut(s) 260, 417
BsmAI GTCTC 1 cut(s) 774
BsmFI GGGAC 2 cut(s) 699, 773
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 8 cut(s) 144, 264, 272, 441, 457, 595, 626, 820
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 505, 544, 766
BspANI GGCC 8 cut(s) 144, 264, 272, 441, 457, 595, 626, 820
BspCNI CTCAG 2 cut(s) 159, 183
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 434, 789
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 432
BsrDI GCAATG 4 cut(s) 97, 557, 886, 951
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 3 cut(s) 280, 821, 821
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 414, 436
BssMI GATC 3 cut(s) 505, 544, 766
Bst2UI CCWGG 2 cut(s) 437, 929
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 2 cut(s) 359, 394
BstC8I GCNNGC 1 cut(s) 925
BstDEI CTNAG 2 cut(s) 146, 191
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 570, 585
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 188, 302
BstKTI GATC 3 cut(s) 508, 547, 769
BstMAI GTCTC 1 cut(s) 774
BstMBI GATC 3 cut(s) 505, 544, 766
BstMWI GCNNNNNNNGC 3 cut(s) 407, 592, 601
BstNI CCWGG 2 cut(s) 437, 929
BstSCI CCNGG 3 cut(s) 259, 435, 927
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 570, 588
BstV2I GAAGAC 1 cut(s) 304
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 8 cut(s) 144, 264, 272, 441, 457, 595, 626, 820
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 570, 585
BtsIMutI CAGTG 1 cut(s) 828
Cac8I GCNNGC 1 cut(s) 925
CfoI GCGC 2 cut(s) 188, 302
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 8 cut(s) 262, 271, 439, 456, 593, 695, 787, 900
CseI GACGC 1 cut(s) 463
Csp6I GTAC 4 cut(s) 4, 118, 433, 814
CviAII CATG 3 cut(s) 178, 622, 919
CviQI GTAC 4 cut(s) 4, 118, 433, 814
DdeI CTNAG 2 cut(s) 146, 191
DpnI GATC 3 cut(s) 507, 546, 768
DpnII GATC 3 cut(s) 505, 544, 766
DraI TTTAAA 1 cut(s) 774
EaeI YGGCCR 2 cut(s) 624, 818
Eam1104I CTCTTC 2 cut(s) 359, 394
EarI CTCTTC 2 cut(s) 359, 394
EciI GGCGGA 4 cut(s) 246, 352, 364, 385
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 695, 787, 900
EcoRII CCWGG 2 cut(s) 435, 927
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 3 cut(s) 181, 625, 922
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 2 cut(s) 699, 773
FatI CATG 3 cut(s) 177, 621, 918
FauI CCCGC 2 cut(s) 221, 636
Fnu4HI GCNGC 6 cut(s) 399, 402, 483, 501, 584, 602
FokI GGATG 2 cut(s) 577, 592
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 6 cut(s) 399, 402, 483, 501, 584, 602
FspBI CTAG 2 cut(s) 590, 951
GlaI GCGC 2 cut(s) 187, 301
GluI GCNGC 6 cut(s) 399, 402, 483, 501, 584, 602
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 2 cut(s) 263, 950
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 8 cut(s) 144, 264, 272, 441, 457, 595, 626, 820
HapII CCGG 3 cut(s) 183, 260, 454
HgaI GACGC 1 cut(s) 463
HhaI GCGC 2 cut(s) 188, 302
Hin1II CATG 3 cut(s) 181, 625, 922
Hin6I GCGC 2 cut(s) 186, 300
HinP1I GCGC 2 cut(s) 186, 300
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 846
HpaII CCGG 3 cut(s) 183, 260, 454
HphI GGTGA 5 cut(s) 202, 229, 457, 469, 755
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 4 cut(s) 149, 192, 535, 639
Hpy188III TCNNGA 2 cut(s) 448, 790
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 2 cut(s) 157, 601
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 2 cut(s) 155, 632
HpyCH4V TGCA 5 cut(s) 102, 604, 731, 865, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 592, 601
HpyF3I CTNAG 2 cut(s) 146, 191
HpySE526I ACGT 2 cut(s) 155, 632
Hsp92II CATG 3 cut(s) 181, 625, 922
HspAI GCGC 2 cut(s) 186, 300
KpnI GGTACC 1 cut(s) 436
Kzo9I GATC 3 cut(s) 505, 544, 766
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 2 cut(s) 570, 588
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 590, 951
MaeII ACGT 2 cut(s) 155, 632
MaeIII GTNAC 1 cut(s) 475
MalI GATC 3 cut(s) 507, 546, 768
MboI GATC 3 cut(s) 505, 544, 766
MboII GAAGA 6 cut(s) 207, 304, 346, 361, 381, 676
MhlI GDGCHC 1 cut(s) 423
MlsI TGGCCA 2 cut(s) 626, 820
MluCI AATT 1 cut(s) 616
MluNI TGGCCA 2 cut(s) 626, 820
Mox20I TGGCCA 2 cut(s) 626, 820
Mph1103I ATGCAT 1 cut(s) 733
MscI TGGCCA 2 cut(s) 626, 820
MseI TTAA 2 cut(s) 773, 800
MslI CAYNNNNRTG 1 cut(s) 895
Msp20I TGGCCA 2 cut(s) 626, 820
MspI CCGG 3 cut(s) 183, 260, 454
MspR9I CCNGG 3 cut(s) 261, 437, 929
Mva1269I GAATGC 1 cut(s) 733
MvaI CCWGG 2 cut(s) 437, 929
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 3 cut(s) 407, 592, 601
NciI CCSGG 1 cut(s) 261
NdeII GATC 3 cut(s) 505, 544, 766
NlaIII CATG 3 cut(s) 181, 625, 922
NlaIV GGNNCC 2 cut(s) 434, 789
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 775
PctI GAATGC 1 cut(s) 733
PfeI GAWTC 1 cut(s) 846
PflFI GACNNNGTC 1 cut(s) 785
PkrI GCNGC 6 cut(s) 400, 403, 484, 502, 585, 603
Psp1406I AACGTT 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 435, 927
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 2 cut(s) 435, 927
PspN4I GGNNCC 2 cut(s) 434, 789
PspPI GGNCC 8 cut(s) 262, 271, 439, 456, 593, 695, 787, 900
PsyI GACNNNGTC 1 cut(s) 785
RsaI GTAC 4 cut(s) 5, 119, 434, 815
RsaNI GTAC 4 cut(s) 4, 118, 433, 814
RseI CAYNNNNRTG 1 cut(s) 895
SaqAI TTAA 2 cut(s) 773, 800
SatI GCNGC 6 cut(s) 399, 402, 483, 501, 584, 602
Sau3AI GATC 3 cut(s) 505, 544, 766
Sau96I GGNCC 8 cut(s) 262, 271, 439, 456, 593, 695, 787, 900
ScrFI CCNGG 3 cut(s) 261, 437, 929
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 522
SinI GGWCC 3 cut(s) 695, 787, 900
SmiMI CAYNNNNRTG 1 cut(s) 895
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 616
SspMI CTAG 2 cut(s) 590, 951
StyD4I CCNGG 3 cut(s) 259, 435, 927
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 2 cut(s) 158, 635
TaqI TCGA 1 cut(s) 656
TasI AATT 1 cut(s) 616
TatI WGTACW 2 cut(s) 3, 813
TauI GCSGC 4 cut(s) 401, 404, 485, 503
TfiI GAWTC 1 cut(s) 846
Tru1I TTAA 2 cut(s) 773, 800
Tru9I TTAA 2 cut(s) 773, 800
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 583, 601
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 3 cut(s) 610, 838, 879
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 828
Tth111I GACNNNGTC 1 cut(s) 785
VpaK11BI GGWCC 3 cut(s) 695, 787, 900
XspI CTAG 2 cut(s) 590, 951
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.