MD05G1096500.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0009097
Physical Location & Seq
Forward (+)
20281464 .. 20283654
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1096500.v1.1.491

Sequence Viewer

Length: 786 bp
ATGACGGCCGCTTTACGCCGGAGCACCAACCTCACCCGCCTGTTACAGAAGAACTCCATCACCGACCCGATCGGAGACCCGAAGCTGCTCCAAACCCAAACGCAAACCCACTCCAAAGGCTACCTCCGCTTCCCTCATGTCTTCCGCAAAGCCAGAGACTACGACCTGTCCCCCTCTGTCTTCTCCTCCGCCTTCTCCTCCGCCAAGTCCTCCGTCGAAGCGCCGTCGGTCTCCAAGCTTGGGTTCGTGGGATGGTACCTGGGTATGATCCAGTCCCGCCCCGTTTTGACCAAGAGTGTCACCGCGGCGCTTATTTACACCGCCGCCGATTTGTCCTCCCAGACATTAGCAAAATCATCCCTTTCAGAATCTTATGATCTTGTAAGGACTGCGCGCATGGCTGGATATGGGATGCTGGTTTTGGGTCCGTCGCTGCATTTCTGGTTCAATTTCATGTCGAAATCTTACCCAAAACGGGATATGTTTTCGACATTGAAGAAAATGGCAATGGGGCAGGTGCTTTTTGGACCTACAATGACGTTTGCTTTCTTCTCCTTGAATGCTTGTCTACAAGGTGAAAATGGTGGAGAAATTGTTGCCCGCCTACAGCGAGACTTGTTCCCTACATTGTTAAATGGCGTTATGTACTGGCCAATATGTGATTTTATCACATTCAGATTCATTCCTGTCCATTTACAGCCATTAGTGAGCAATGGATTTTCGTATCTGTGGACCATTTACATCACGTACATGGCAGGCCTGGAGAAAGCAGGCACAACGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

262

Amino Acids

29.12

Weight (kDa)

9.79

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 189 - 248 4.5e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
Acc36I ACCTGC 1 cut(s) 505
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 568
AccII CGCG 2 cut(s) 305, 394
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 2 cut(s) 6, 650
AfaI GTAC 3 cut(s) 257, 647, 749
AfiI CCNNNNNNNGG 2 cut(s) 240, 475
AgsI TTSAA 3 cut(s) 448, 496, 559
AjnI CCWGG 2 cut(s) 258, 759
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 2 cut(s) 85, 238
AluI AGCT 2 cut(s) 85, 238
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 4 cut(s) 69, 150, 235, 606
AlwI GGATC 1 cut(s) 262
AoxI GGCC 3 cut(s) 6, 650, 757
ApeKI GCWGC 2 cut(s) 85, 433
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 4 cut(s) 223, 310, 394, 396
AspS9I GGNCC 3 cut(s) 425, 527, 732
AsuHPI GGTGA 4 cut(s) 25, 52, 292, 587
AvaII GGWCC 3 cut(s) 425, 527, 732
BaeI ACNNNNGTAYC 2 cut(s) 247, 280
BalI TGGCCA 1 cut(s) 652
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 133, 172
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 72, 420
BccI CCATC 2 cut(s) 65, 246
BceAI ACGGC 2 cut(s) 21, 208
BciT130I CCWGG 2 cut(s) 260, 761
BcoDI GTCTC 4 cut(s) 69, 150, 235, 606
BfaI CTAG 1 cut(s) 784
BfmI CTRYAG 1 cut(s) 605
BfoI RGCGCY 2 cut(s) 224, 311
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 5 cut(s) 9, 86, 306, 324, 434
BlsI GCNGC 5 cut(s) 10, 87, 307, 325, 435
Bme1390I CCNGG 2 cut(s) 260, 761
Bme18I GGWCC 3 cut(s) 425, 527, 732
BmgT120I GGNCC 3 cut(s) 425, 527, 732
BmiI GGNNCC 2 cut(s) 257, 426
BmrFI CCNGG 2 cut(s) 260, 761
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 133, 172
BpmI CTGGAG 1 cut(s) 782
BsaAI YACGTR 1 cut(s) 747
BsaI GGTCTC 2 cut(s) 69, 235
BsaJI CCNNGG 2 cut(s) 259, 303
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 475
Bse1I ACTGG 2 cut(s) 271, 653
Bse3DI GCAATG 2 cut(s) 513, 718
BseBI CCWGG 2 cut(s) 260, 761
BseDI CCNNGG 2 cut(s) 259, 303
BseGI GGATG 3 cut(s) 257, 356, 417
BseLI CCNNNNNNNGG 2 cut(s) 240, 475
BseMI GCAATG 2 cut(s) 513, 718
BseNI ACTGG 2 cut(s) 271, 653
BsePI GCGCGC 1 cut(s) 392
BseRI GAGGAG 2 cut(s) 175, 187
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 72, 420
Bsh1236I CGCG 2 cut(s) 305, 394
Bsh1285I CGRYCG 2 cut(s) 9, 72
BshFI GGCC 3 cut(s) 8, 652, 759
BshNI GGYRCC 1 cut(s) 255
BsiEI CGRYCG 2 cut(s) 9, 72
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 19
BslFI GGGAC 2 cut(s) 154, 259
BslI CCNNNNNNNGG 2 cut(s) 240, 475
BsmAI GTCTC 4 cut(s) 69, 150, 235, 606
BsmFI GGGAC 2 cut(s) 154, 259
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 8, 652, 759
Bso31I GGTCTC 2 cut(s) 69, 235
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 69, 267, 376
BspANI GGCC 3 cut(s) 8, 652, 759
BspFNI CGCG 2 cut(s) 305, 394
BspLI GGNNCC 2 cut(s) 257, 426
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 2 cut(s) 69, 235
BsrDI GCAATG 2 cut(s) 513, 718
BsrI ACTGG 2 cut(s) 271, 653
BssECI CCNNGG 2 cut(s) 259, 303
BssHII GCGCGC 1 cut(s) 392
BssMI GATC 3 cut(s) 69, 267, 376
Bst2UI CCWGG 2 cut(s) 260, 761
BstBAI YACGTR 1 cut(s) 747
BstC8I GCNNGC 4 cut(s) 394, 601, 757, 772
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 3 cut(s) 257, 356, 417
BstFNI CGCG 2 cut(s) 305, 394
BstH2I RGCGCY 2 cut(s) 224, 311
BstHHI GCGC 4 cut(s) 223, 310, 394, 396
BstKTI GATC 3 cut(s) 72, 270, 379
BstMAI GTCTC 4 cut(s) 69, 150, 235, 606
BstMBI GATC 3 cut(s) 69, 267, 376
BstMCI CGRYCG 2 cut(s) 9, 72
BstMWI GCNNNNNNNGC 2 cut(s) 126, 398
BstNI CCWGG 2 cut(s) 260, 761
BstSCI CCNGG 2 cut(s) 258, 759
BstSFI CTRYAG 1 cut(s) 605
BstUI CGCG 2 cut(s) 305, 394
BstV1I GCAGC 2 cut(s) 72, 420
BstV2I GAAGAC 2 cut(s) 133, 172
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 8, 652, 759
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 3 cut(s) 257, 356, 417
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 4 cut(s) 394, 601, 757, 772
CfoI GCGC 4 cut(s) 223, 310, 394, 396
Cfr13I GGNCC 3 cut(s) 425, 527, 732
Cfr42I CCGCGG 1 cut(s) 306
Csp6I GTAC 3 cut(s) 256, 646, 748
CviAII CATG 4 cut(s) 137, 397, 454, 751
CviJI RGCY 9 cut(s) 8, 85, 120, 152, 238, 401, 652, 700, 759
CviKI_1 RGCY 9 cut(s) 8, 85, 120, 152, 238, 401, 652, 700, 759
CviQI GTAC 3 cut(s) 256, 646, 748
DpnI GATC 3 cut(s) 71, 269, 378
DpnII GATC 3 cut(s) 69, 267, 376
EaeI YGGCCR 2 cut(s) 6, 650
EagI CGGCCG 1 cut(s) 6
EciI GGCGGA 2 cut(s) 178, 190
EclXI CGGCCG 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 759
Eco31I GGTCTC 2 cut(s) 69, 235
Eco47I GGWCC 3 cut(s) 425, 527, 732
Eco52I CGGCCG 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 258, 759
FaeI CATG 4 cut(s) 140, 400, 457, 754
FaqI GGGAC 2 cut(s) 154, 259
FatI CATG 4 cut(s) 136, 396, 453, 750
FauI CCCGC 3 cut(s) 44, 284, 608
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 5 cut(s) 9, 86, 306, 324, 434
FokI GGATG 3 cut(s) 264, 343, 424
Fsp4HI GCNGC 5 cut(s) 9, 86, 306, 324, 434
FspBI CTAG 1 cut(s) 784
GlaI GCGC 4 cut(s) 222, 309, 393, 395
GluI GCNGC 5 cut(s) 9, 86, 306, 324, 434
GsuI CTGGAG 1 cut(s) 782
HaeII RGCGCY 2 cut(s) 224, 311
HaeIII GGCC 3 cut(s) 8, 652, 759
HapII CCGG 1 cut(s) 19
HhaI GCGC 4 cut(s) 223, 310, 394, 396
Hin1II CATG 4 cut(s) 140, 400, 457, 754
Hin6I GCGC 4 cut(s) 221, 308, 392, 394
HinP1I GCGC 4 cut(s) 221, 308, 392, 394
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 368, 678
HpaII CCGG 1 cut(s) 19
HphI GGTGA 4 cut(s) 25, 52, 292, 587
Hpy166II GTNNAC 2 cut(s) 569, 732
Hpy188I TCNGA 3 cut(s) 74, 367, 677
Hpy8I GTNNAC 2 cut(s) 569, 732
Hpy99I CGWCG 3 cut(s) 218, 229, 433
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 3 cut(s) 539, 746, 779
HpyCH4V TGCA 1 cut(s) 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 398
HpySE526I ACGT 3 cut(s) 539, 746, 779
Hsp92II CATG 4 cut(s) 140, 400, 457, 754
HspAI GCGC 4 cut(s) 221, 308, 392, 394
KpnI GGTACC 1 cut(s) 259
KspI CCGCGG 1 cut(s) 306
Kzo9I GATC 3 cut(s) 69, 267, 376
LmnI GCTCC 2 cut(s) 21, 93
Lsp1109I GCAGC 2 cut(s) 72, 420
LweI GCATC 1 cut(s) 402
MaeI CTAG 1 cut(s) 784
MaeII ACGT 3 cut(s) 539, 746, 779
MaeIII GTNAC 2 cut(s) 42, 298
MalI GATC 3 cut(s) 71, 269, 378
MboI GATC 3 cut(s) 69, 267, 376
MboII GAAGA 5 cut(s) 61, 133, 172, 508, 541
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 652
MluCI AATT 2 cut(s) 448, 591
MluNI TGGCCA 1 cut(s) 652
MnlI CCTC 8 cut(s) 41, 134, 144, 184, 196, 208, 220, 346
Mox20I TGGCCA 1 cut(s) 652
MscI TGGCCA 1 cut(s) 652
MseI TTAA 1 cut(s) 632
MslI CAYNNNNRTG 1 cut(s) 749
Msp20I TGGCCA 1 cut(s) 652
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 2 cut(s) 260, 761
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 260, 761
MvnI CGCG 2 cut(s) 305, 394
MwoI GCNNNNNNNGC 2 cut(s) 126, 398
NdeII GATC 3 cut(s) 69, 267, 376
NlaIII CATG 4 cut(s) 140, 400, 457, 754
NlaIV GGNNCC 2 cut(s) 257, 426
NmuCI GTSAC 1 cut(s) 298
PaqCI CACCTGC 1 cut(s) 505
PauI GCGCGC 1 cut(s) 392
PceI AGGCCT 1 cut(s) 759
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 368, 678
PkrI GCNGC 5 cut(s) 10, 87, 307, 325, 435
Ple19I CGATCG 1 cut(s) 72
Ppu21I YACGTR 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 258, 759
PspGI CCWGG 2 cut(s) 258, 759
PspN4I GGNNCC 2 cut(s) 257, 426
PspPI GGNCC 3 cut(s) 425, 527, 732
PteI GCGCGC 1 cut(s) 392
PvuI CGATCG 1 cut(s) 72
RsaI GTAC 3 cut(s) 257, 647, 749
RsaNI GTAC 3 cut(s) 256, 646, 748
RseI CAYNNNNRTG 1 cut(s) 749
SacII CCGCGG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 5 cut(s) 9, 86, 306, 324, 434
Sau3AI GATC 3 cut(s) 69, 267, 376
Sau96I GGNCC 3 cut(s) 425, 527, 732
ScrFI CCNGG 2 cut(s) 260, 761
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 605
Sfr303I CCGCGG 1 cut(s) 306
SgrBI CCGCGG 1 cut(s) 306
SinI GGWCC 3 cut(s) 425, 527, 732
SmiMI CAYNNNNRTG 1 cut(s) 749
Sse9I AATT 2 cut(s) 448, 591
SseBI AGGCCT 1 cut(s) 759
SspMI CTAG 1 cut(s) 784
StuI AGGCCT 1 cut(s) 759
StyD4I CCNGG 2 cut(s) 258, 759
TaiI ACGT 3 cut(s) 542, 749, 782
TaqI TCGA 3 cut(s) 216, 458, 488
TaqII GACCGA 1 cut(s) 217
TasI AATT 2 cut(s) 448, 591
TatI WGTACW 1 cut(s) 645
TauI GCSGC 3 cut(s) 11, 308, 326
TfiI GAWTC 2 cut(s) 368, 678
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 85, 433
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 442, 670
TspGWI ACGGA 2 cut(s) 202, 417
VpaK11BI GGWCC 3 cut(s) 425, 527, 732
XmiI GTMKAC 1 cut(s) 568
XspI CTAG 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.