Rroxscaffold_7G00212210

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009097
Physical Location & Seq
Reverse (-)
62641862 .. 62644425
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212210.1

Sequence Viewer

Length: 789 bp
ATGTCCGGCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCGCCACCCACCTCCGCCGCCGGGCCTCAAGGCCCAGCTCCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTCTTCCGTAAAGCCAAAGACTACGACCTCTCTCCTCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCCACCGCCTCCACCGGCCTCGTCGGCTGGTATCTGGGCCTCGTCAAGAACCGGCCCATTCTCACCAAGAGCGTCACCGCCGCCCTCATCTACACCGCCGCCGATTTGTCCTCCCAGACTATAGCGAAATCGGATACTTATGATCCTGTGAGGACATTGCGGATGGCTGGATATGGGATGGTGATTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTTTTCGACATTGAAGAAAATGGCTCTGGGGCAGGGACTTTATGGACCTACTATGACTGTTGTGTTCTTCTCTGTGAATGCATTTTTGCAAGGTGAAAATGGTGGAGAAGTTTTTGATCGTTTAAAGCGAGACTTGGTCCCTACATTGTTAAGTGGTGTTATGTACTGGCCAGTGTGTGATTTTATCACATTCAGATTCATTCCTGTCCATTTGCAGACATTAGTGAGCAATGGATTTTCATATCTATGGACCATTTATTTGACATACATGGCAAGCCTGGAGAAAGCAAGTGCAATAGCTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

262

Amino Acids

28.92

Weight (kDa)

9.93

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 187 - 247 5.8e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AclI AACGTT 1 cut(s) 461
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 2 cut(s) 453, 647
AfaI GTAC 1 cut(s) 644
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 445, 493
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 2 cut(s) 106, 779
AluI AGCT 2 cut(s) 106, 779
Alw26I GTCTC 1 cut(s) 603
AlwI GGATC 1 cut(s) 368
AoxI GGCC 8 cut(s) 91, 99, 247, 268, 284, 422, 453, 647
ApeKI GCWGC 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AspLEI GCGC 2 cut(s) 14, 131
AspS9I GGNCC 8 cut(s) 91, 100, 268, 285, 422, 524, 616, 729
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 6 cut(s) 28, 55, 286, 298, 424, 584
AvaII GGWCC 3 cut(s) 524, 616, 729
BalI TGGCCA 2 cut(s) 455, 649
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 417
BccI CCATC 3 cut(s) 68, 388, 403
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 758
BciVI GTATCC 1 cut(s) 358
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 2 cut(s) 419, 780
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 1 cut(s) 358
BglI GCCNNNNNGGC 1 cut(s) 255
BisI GCNGC 7 cut(s) 10, 86, 228, 231, 312, 330, 431
BlsI GCNGC 7 cut(s) 11, 87, 229, 232, 313, 331, 432
Bme1390I CCNGG 2 cut(s) 90, 758
Bme18I GGWCC 3 cut(s) 524, 616, 729
BmgT120I GGNCC 8 cut(s) 91, 100, 268, 285, 422, 524, 616, 729
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 2 cut(s) 90, 758
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 2 cut(s) 92, 779
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 2 cut(s) 245, 282
Bse1I ACTGG 3 cut(s) 109, 650, 650
Bse3DI GCAATG 2 cut(s) 386, 715
BseBI CCWGG 1 cut(s) 758
BseGI GGATG 2 cut(s) 399, 414
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 2 cut(s) 386, 715
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 3 cut(s) 109, 650, 650
BseRI GAGGAG 3 cut(s) 162, 178, 205
BseXI GCAGC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 8 cut(s) 93, 101, 249, 270, 286, 424, 455, 649
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 4 cut(s) 6, 89, 246, 283
BslFI GGGAC 2 cut(s) 528, 602
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 528, 602
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 8 cut(s) 93, 101, 249, 270, 286, 424, 455, 649
Bsp143I GATC 2 cut(s) 373, 595
BspANI GGCC 8 cut(s) 93, 101, 249, 270, 286, 424, 455, 649
BspCNI CTCAG 1 cut(s) 9
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 618
BspPI GGATC 1 cut(s) 368
BsrDI GCAATG 2 cut(s) 386, 715
BsrFI RCCGGY 2 cut(s) 245, 282
BsrI ACTGG 3 cut(s) 109, 650, 650
BssAI RCCGGY 2 cut(s) 245, 282
BssMI GATC 2 cut(s) 373, 595
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 2 cut(s) 188, 223
BstC8I GCNNGC 1 cut(s) 754
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 399, 414
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 131
BstKTI GATC 2 cut(s) 376, 598
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 2 cut(s) 373, 595
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 236, 255, 430
BstNI CCWGG 1 cut(s) 758
BstSCI CCNGG 2 cut(s) 88, 756
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 133
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 8 cut(s) 93, 101, 249, 270, 286, 424, 455, 649
BtsCI GGATG 2 cut(s) 399, 414
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 754
CfoI GCGC 2 cut(s) 14, 131
Cfr10I RCCGGY 2 cut(s) 245, 282
Cfr13I GGNCC 8 cut(s) 91, 100, 268, 285, 422, 524, 616, 729
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 643
CviAII CATG 2 cut(s) 451, 748
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 375, 597
DpnII GATC 2 cut(s) 373, 595
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 2 cut(s) 453, 647
Eam1104I CTCTTC 2 cut(s) 188, 223
EarI CTCTTC 2 cut(s) 188, 223
EciI GGCGGA 4 cut(s) 72, 181, 193, 214
Eco47I GGWCC 3 cut(s) 524, 616, 729
EcoRII CCWGG 1 cut(s) 756
EcoT22I ATGCAT 1 cut(s) 562
FaeI CATG 2 cut(s) 454, 751
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FaqI GGGAC 2 cut(s) 528, 602
FatI CATG 2 cut(s) 450, 747
FauI CCCGC 2 cut(s) 47, 465
Fnu4HI GCNGC 7 cut(s) 10, 86, 228, 231, 312, 330, 431
FokI GGATG 2 cut(s) 406, 421
Fsp4HI GCNGC 7 cut(s) 10, 86, 228, 231, 312, 330, 431
FspBI CTAG 2 cut(s) 419, 780
GlaI GCGC 2 cut(s) 13, 130
GluI GCNGC 7 cut(s) 10, 86, 228, 231, 312, 330, 431
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 2 cut(s) 92, 779
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 8 cut(s) 93, 101, 249, 270, 286, 424, 455, 649
HapII CCGG 4 cut(s) 6, 89, 246, 283
HgaI GACGC 1 cut(s) 292
HhaI GCGC 2 cut(s) 14, 131
Hin1II CATG 2 cut(s) 454, 751
Hin6I GCGC 2 cut(s) 12, 129
HinP1I GCGC 2 cut(s) 12, 129
HinfI GANTC 2 cut(s) 415, 675
HpaII CCGG 4 cut(s) 6, 89, 246, 283
HphI GGTGA 6 cut(s) 28, 55, 286, 298, 424, 584
Hpy188I TCNGA 4 cut(s) 18, 364, 468, 674
Hpy188III TCNNGA 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 257, 430
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 5 cut(s) 433, 560, 568, 694, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 255, 430
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 2 cut(s) 454, 751
HspAI GCGC 2 cut(s) 12, 129
Kzo9I GATC 2 cut(s) 373, 595
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 417
MaeI CTAG 2 cut(s) 419, 780
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 375, 597
MboI GATC 2 cut(s) 373, 595
MboII GAAGA 7 cut(s) 33, 133, 175, 190, 210, 505, 538
MlsI TGGCCA 2 cut(s) 455, 649
MluCI AATT 1 cut(s) 445
MluNI TGGCCA 2 cut(s) 455, 649
Mox20I TGGCCA 2 cut(s) 455, 649
Mph1103I ATGCAT 1 cut(s) 562
MscI TGGCCA 2 cut(s) 455, 649
MseI TTAA 2 cut(s) 602, 629
MslI CAYNNNNRTG 1 cut(s) 724
Msp20I TGGCCA 2 cut(s) 455, 649
MspI CCGG 4 cut(s) 6, 89, 246, 283
MspR9I CCNGG 2 cut(s) 90, 758
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 1 cut(s) 758
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 236, 255, 430
NciI CCSGG 1 cut(s) 90
NdeII GATC 2 cut(s) 373, 595
NlaIII CATG 2 cut(s) 454, 751
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 604
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 415, 675
PflFI GACNNNGTC 1 cut(s) 614
PkrI GCNGC 7 cut(s) 11, 87, 229, 232, 313, 331, 432
Psp1406I AACGTT 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 756
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 8 cut(s) 91, 100, 268, 285, 422, 524, 616, 729
PsyI GACNNNGTC 1 cut(s) 614
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 724
SaqAI TTAA 2 cut(s) 602, 629
SatI GCNGC 7 cut(s) 10, 86, 228, 231, 312, 330, 431
Sau3AI GATC 2 cut(s) 373, 595
Sau96I GGNCC 8 cut(s) 91, 100, 268, 285, 422, 524, 616, 729
ScrFI CCNGG 2 cut(s) 90, 758
SetI ASST 8 cut(s) 82, 108, 126, 168, 464, 529, 574, 781
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 3 cut(s) 524, 616, 729
SmiMI CAYNNNNRTG 1 cut(s) 724
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 445
SspMI CTAG 2 cut(s) 419, 780
StyD4I CCNGG 2 cut(s) 88, 756
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 485
TasI AATT 1 cut(s) 445
TatI WGTACW 1 cut(s) 642
TauI GCSGC 6 cut(s) 12, 88, 230, 233, 314, 332
TfiI GAWTC 2 cut(s) 415, 675
Tru1I TTAA 2 cut(s) 602, 629
Tru9I TTAA 2 cut(s) 602, 629
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 439, 667, 708
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 657
Tth111I GACNNNGTC 1 cut(s) 614
VpaK11BI GGWCC 3 cut(s) 524, 616, 729
XspI CTAG 2 cut(s) 419, 780
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.