Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002560.1

Orthogroup ID

OG0009097

Physical Location & Seq

Genomic Coordinates Forward (+)

40973 .. 43012

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002560.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgtccggcgctctgagaagaaacactaccctcacccgcctcatacacaagcactccatctccgaccaccacacacctccgccgggcctcaaggcccagctccagtccaaagcctacctccgcgcccccaatgtgttccgtaaagccaaagactacgacctctctcctccctccctcttctcctccgccttcttctccgccaagtcctcctcttcctccgccgccaccaccgggctcgtcggctggtacctgggcctcgtcaagaaccggcccattctcaccaagagcgtcaccgccgccctcatctacaccgccgccgatttgtcctcccagactatagcgaaatcggatacttatgatcctgtgaggacattgcggatggctggctatgggatgctgattctagggccgtcgctgcatttctggttcaatttcatggccaaaacgtttccgaagcgggatatgttttcgacattgaagaaaatggctctggggcagggactttatggacctactatgactgttgtgttcttctctgtgaatgcatttttacaaggtgaaaatggtggagaagtttttgatcgtttaaagcgagacttggtccctacattgttaagtggtgttatgtattggccagtgtgtgattttatcacattcagattcattcctgtccatttgcagacattagtgagcaatggattttcatatctatggaccatttatttgacatacatggcaagcctggagaaagcaagtgcaatagctagtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

257

Amino Acids

28.52

Weight (kDa)

9.87

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14860 AT4G33905
fragaria_vesca	FvH4_2g03950 FvH4_2g03950 FvH4_2g03950 FvH4_2g03950
malus_domestica	MD05G1096500.v1.1 MD10G1102900.v1.1
prunus_persica	Prupe.8G141000_v2.0.a1
pyrus_communis	pycom05g09540 pycom10g08860
rosa_chinensis	RchiOBHm_Chr6g0253001
rosa_laevigata	RLG00000015045
rosa_multiflora	Rmu_co8421641.1_g000001 Rmu_sc0002560.1_g000009
rosa_roxburghii	Rroxscaffold_7G00212210
rosa_rugosa	Rorug05G0542800
rosa_samantha	Rh6AG056600 Rh6BG051000 Rh6CG049000 Rh6DG044700
rosa_wichuraiana	Rw6G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	123
AclI	AACGTT	1 cut(s)	446
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	2 cut(s)	438, 632
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	83, 231
AgsI	TTSAA	2 cut(s)	430, 478
AjnI	CCWGG	2 cut(s)	249, 741
AluBI	AGCT	2 cut(s)	100, 764
AluI	AGCT	2 cut(s)	100, 764
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	7 cut(s)	85, 93, 253, 269, 407, 438, 632
ApeKI	GCWGC	1 cut(s)	415
ArsI	GACNNNNNNTTYG	2 cut(s)	706, 738
Asp718I	GGTACC	1 cut(s)	246
AspLEI	GCGC	2 cut(s)	11, 125
AspS9I	GGNCC	8 cut(s)	85, 94, 253, 270, 407, 509, 601, 714
AsuC2I	CCSGG	2 cut(s)	84, 232
AsuHPI	GGTGA	4 cut(s)	25, 271, 283, 569
AvaII	GGWCC	3 cut(s)	509, 601, 714
BalI	TGGCCA	2 cut(s)	440, 634
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	2 cut(s)	65, 373
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	2 cut(s)	251, 743
BciVI	GTATCC	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	84, 232
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	2 cut(s)	404, 765
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	4 cut(s)	222, 297, 315, 416
BlsI	GCNGC	4 cut(s)	223, 298, 316, 417
Bme1390I	CCNGG	4 cut(s)	84, 232, 251, 743
Bme18I	GGWCC	3 cut(s)	509, 601, 714
BmgT120I	GGNCC	8 cut(s)	85, 94, 253, 270, 407, 509, 601, 714
BmiI	GGNNCC	2 cut(s)	248, 603
BmrFI	CCNGG	4 cut(s)	84, 232, 251, 743
BmsI	GCATC	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	86, 764
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	2 cut(s)	84, 232
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 44, 68, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 231
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	103, 635
Bse3DI	GCAATG	2 cut(s)	371, 700
BseBI	CCWGG	2 cut(s)	251, 743
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	384, 399
BseLI	CCNNNNNNNGG	2 cut(s)	83, 231
BseMI	GCAATG	2 cut(s)	371, 700
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	103, 635
BseRI	GAGGAG	3 cut(s)	156, 172, 199
BseXI	GCAGC	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	7 cut(s)	87, 95, 255, 271, 409, 440, 634
BshNI	GGYRCC	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	6, 83, 231, 268
BslFI	GGGAC	2 cut(s)	513, 587
BslI	CCNNNNNNNGG	2 cut(s)	83, 231
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	2 cut(s)	513, 587
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	7 cut(s)	87, 95, 255, 271, 409, 440, 634
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	358, 580
BspANI	GGCC	7 cut(s)	87, 95, 255, 271, 409, 440, 634
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	248, 603
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	2 cut(s)	371, 700
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	103, 635
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	358, 580
Bst2UI	CCWGG	2 cut(s)	251, 743
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	182, 217
BstC8I	GCNNGC	2 cut(s)	385, 739
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	384, 399
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 125
BstKTI	GATC	2 cut(s)	361, 583
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	2 cut(s)	358, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	2 cut(s)	251, 743
BstSCI	CCNGG	4 cut(s)	82, 230, 249, 741
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	7 cut(s)	87, 95, 255, 271, 409, 440, 634
BtsCI	GGATG	2 cut(s)	384, 399
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	2 cut(s)	385, 739
CfoI	GCGC	2 cut(s)	11, 125
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	8 cut(s)	85, 94, 253, 270, 407, 509, 601, 714
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	436, 733
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	360, 582
DpnII	GATC	2 cut(s)	358, 580
DraI	TTTAAA	1 cut(s)	588
EaeI	YGGCCR	2 cut(s)	438, 632
Eam1104I	CTCTTC	2 cut(s)	182, 217
EarI	CTCTTC	2 cut(s)	182, 217
EciI	GGCGGA	4 cut(s)	69, 175, 187, 208
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	3 cut(s)	509, 601, 714
EcoRII	CCWGG	2 cut(s)	249, 741
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	2 cut(s)	439, 736
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	2 cut(s)	513, 587
FatI	CATG	2 cut(s)	435, 732
FauI	CCCGC	2 cut(s)	44, 450
Fnu4HI	GCNGC	4 cut(s)	222, 297, 315, 416
FokI	GGATG	2 cut(s)	391, 406
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	222, 297, 315, 416
FspBI	CTAG	2 cut(s)	404, 765
GlaI	GCGC	2 cut(s)	10, 124
GluI	GCNGC	4 cut(s)	222, 297, 315, 416
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	86, 764
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	7 cut(s)	87, 95, 255, 271, 409, 440, 634
HapII	CCGG	4 cut(s)	6, 83, 231, 268
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	2 cut(s)	11, 125
Hin1II	CATG	2 cut(s)	439, 736
Hin6I	GCGC	2 cut(s)	9, 123
HinP1I	GCGC	2 cut(s)	9, 123
HinfI	GANTC	2 cut(s)	400, 660
HpaII	CCGG	4 cut(s)	6, 83, 231, 268
HphI	GGTGA	4 cut(s)	25, 271, 283, 569
Hpy188I	TCNGA	5 cut(s)	15, 64, 349, 453, 659
Hpy188III	TCNNGA	1 cut(s)	262
Hpy99I	CGWCG	2 cut(s)	242, 415
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	4 cut(s)	418, 545, 679, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	2 cut(s)	439, 736
HspAI	GCGC	2 cut(s)	9, 123
KpnI	GGTACC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	358, 580
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	2 cut(s)	404, 765
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	360, 582
MboI	GATC	2 cut(s)	358, 580
MboII	GAAGA	6 cut(s)	30, 169, 184, 204, 490, 523
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	2 cut(s)	440, 634
MluCI	AATT	1 cut(s)	430
MluNI	TGGCCA	2 cut(s)	440, 634
MmeI	TCCRAC	1 cut(s)	87
Mox20I	TGGCCA	2 cut(s)	440, 634
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	2 cut(s)	440, 634
MseI	TTAA	2 cut(s)	587, 614
MslI	CAYNNNNRTG	1 cut(s)	709
Msp20I	TGGCCA	2 cut(s)	440, 634
MspI	CCGG	4 cut(s)	6, 83, 231, 268
MspR9I	CCNGG	4 cut(s)	84, 232, 251, 743
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	251, 743
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	2 cut(s)	84, 232
NdeII	GATC	2 cut(s)	358, 580
NlaIII	CATG	2 cut(s)	439, 736
NlaIV	GGNNCC	2 cut(s)	248, 603
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	589
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	400, 660
PflFI	GACNNNGTC	1 cut(s)	599
PkrI	GCNGC	4 cut(s)	223, 298, 316, 417
Psp1406I	AACGTT	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	249, 741
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	2 cut(s)	249, 741
PspN4I	GGNNCC	2 cut(s)	248, 603
PspPI	GGNCC	8 cut(s)	85, 94, 253, 270, 407, 509, 601, 714
PsyI	GACNNNGTC	1 cut(s)	599
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	709
SaqAI	TTAA	2 cut(s)	587, 614
SatI	GCNGC	4 cut(s)	222, 297, 315, 416
Sau3AI	GATC	2 cut(s)	358, 580
Sau96I	GGNCC	8 cut(s)	85, 94, 253, 270, 407, 509, 601, 714
ScrFI	CCNGG	4 cut(s)	84, 232, 251, 743
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	79, 102, 120, 162, 252, 449, 514, 559, 766
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	3 cut(s)	509, 601, 714
SmiMI	CAYNNNNRTG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	404, 765
StyD4I	CCNGG	4 cut(s)	82, 230, 249, 741
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	470
TasI	AATT	1 cut(s)	430
TauI	GCSGC	3 cut(s)	224, 299, 317
TfiI	GAWTC	2 cut(s)	400, 660
Tru1I	TTAA	2 cut(s)	587, 614
Tru9I	TTAA	2 cut(s)	587, 614
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	424, 652, 693
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	642
Tth111I	GACNNNGTC	1 cut(s)	599
VpaK11BI	GGWCC	3 cut(s)	509, 601, 714
XspI	CTAG	2 cut(s)	404, 765
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.