MD10G1102900.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0009097
Physical Location & Seq
Forward (+)
16741310 .. 16743593
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1102900.v1.1.491

Sequence Viewer

Length: 795 bp
ATGACGGCCGCTTTCCGCCGGAGCACCAACCTCACTCGCCTGTTACACAAGAACTCCATCACCGACCCGATCGCGCCCCGGAGACTGCTCCAAACCCAAACCCAAACCCAGACCCCCTCCAAAGCCTACCTCCGCTTCCCTCAAGTCTTCCGCAAAGCCAGAGACTACGACCTCTCCCCCTCCGTCTTCTCCTCCGCCTTCTCCTCCTCCAAGTCCTCCGTCGAAGCGCCGTCGGCTTCCAAGTTGGGGTTCGTGGGATGGTACCTGGGTATGATCCAGAGCCGCCCCATTTTGACCAAGAGTGTGACCGCGGCGCTTATTTACACCGCCGCCGATTTGTCCTCCCAGACATTAGCAAAATCATCCTTATCAGAATCTTATGATCTTGTAAGGACAGCGCGCATGGCTGGCTACGGGATGCTGGTTTTGGGTCCGTCGCTGCATTTCTGGTTCAATCTCATGTCGAAAGCTTTGCCGAAACGAGATATGTTTTCGACAATGAAGAAAATGGCAATGGGGCAGCTGCTTTACGGACCTACAATGACGTCTGTTTTCTTCTCCTTGAATGCATGTCTACAAGGTGAAAATGGTGAAGAAATTGTTGCCCGCCTACAGCGAGACTTGTTCCCTACATTGTTAAATGGTGTTATGTACTGGCCAATATGTGATTTTATCACATTCCGATTCATTCCTGTCCATTTACAGCCATTAGTGAGCAACGGATTTTCGTATCTGTGGACCATTTACATGACGTACACGGCAGGCTTGGAGAAAGCTGGCACAAGGACGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

265

Amino Acids

29.58

Weight (kDa)

9.97

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 191 - 250 4e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 548, 791
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 574
AccII CGCG 3 cut(s) 74, 311, 400
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 2 cut(s) 6, 656
AcyI GRCGYC 2 cut(s) 545, 788
AfaI GTAC 3 cut(s) 263, 653, 755
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 2 cut(s) 454, 565
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 470, 523, 776
AluI AGCT 3 cut(s) 470, 523, 776
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 3 cut(s) 76, 156, 612
AlwI GGATC 1 cut(s) 268
AoxI GGCC 2 cut(s) 6, 656
ApeKI GCWGC 3 cut(s) 439, 520, 523
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 5 cut(s) 76, 229, 316, 400, 402
AspS9I GGNCC 3 cut(s) 431, 533, 738
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 52, 593, 602
AvaII GGWCC 3 cut(s) 431, 533, 738
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BalI TGGCCA 1 cut(s) 658
BanI GGYRCC 1 cut(s) 261
BbsI GAAGAC 2 cut(s) 139, 178
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 426, 510, 532
BccI CCATC 2 cut(s) 65, 252
BceAI ACGGC 3 cut(s) 21, 214, 774
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 3 cut(s) 76, 156, 612
BfaI CTAG 1 cut(s) 793
BfmI CTRYAG 1 cut(s) 611
BfoI RGCGCY 2 cut(s) 230, 317
BisI GCNGC 7 cut(s) 9, 283, 312, 330, 440, 521, 524
BlsI GCNGC 7 cut(s) 10, 284, 313, 331, 441, 522, 525
Bme1390I CCNGG 2 cut(s) 79, 266
Bme18I GGWCC 3 cut(s) 431, 533, 738
BmgT120I GGNCC 3 cut(s) 431, 533, 738
BmiI GGNNCC 2 cut(s) 263, 432
BmrFI CCNGG 2 cut(s) 79, 266
BmsI GCATC 1 cut(s) 408
BpiI GAAGAC 2 cut(s) 139, 178
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 79
BsaHI GRCGYC 2 cut(s) 545, 788
BsaJI CCNNGG 3 cut(s) 77, 265, 309
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 77, 265, 309
BseGI GGATG 3 cut(s) 263, 362, 423
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 519
BseNI ACTGG 1 cut(s) 659
BsePI GCGCGC 1 cut(s) 398
BseRI GAGGAG 3 cut(s) 181, 193, 196
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 426, 510, 532
Bsh1236I CGCG 3 cut(s) 74, 311, 400
Bsh1285I CGRYCG 2 cut(s) 9, 72
BshFI GGCC 2 cut(s) 8, 658
BshNI GGYRCC 1 cut(s) 261
BsiEI CGRYCG 2 cut(s) 9, 72
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 19, 79
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 3 cut(s) 76, 156, 612
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 8, 658
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 69, 273, 382
BspANI GGCC 2 cut(s) 8, 658
BspFNI CGCG 3 cut(s) 74, 311, 400
BspLI GGNNCC 2 cut(s) 263, 432
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 3 cut(s) 77, 265, 309
BssHII GCGCGC 1 cut(s) 398
BssMI GATC 3 cut(s) 69, 273, 382
BssNI GRCGYC 2 cut(s) 545, 788
Bst2UI CCWGG 1 cut(s) 266
BstACI GRCGYC 2 cut(s) 545, 788
BstC8I GCNNGC 5 cut(s) 400, 409, 607, 763, 778
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 3 cut(s) 263, 362, 423
BstFNI CGCG 3 cut(s) 74, 311, 400
BstH2I RGCGCY 2 cut(s) 230, 317
BstHHI GCGC 5 cut(s) 76, 229, 316, 400, 402
BstKTI GATC 3 cut(s) 72, 276, 385
BstMAI GTCTC 3 cut(s) 76, 156, 612
BstMBI GATC 3 cut(s) 69, 273, 382
BstMCI CGRYCG 2 cut(s) 9, 72
BstMWI GCNNNNNNNGC 3 cut(s) 233, 404, 408
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 2 cut(s) 77, 264
BstSFI CTRYAG 1 cut(s) 611
BstUI CGCG 3 cut(s) 74, 311, 400
BstV1I GCAGC 3 cut(s) 426, 510, 532
BstV2I GAAGAC 2 cut(s) 139, 178
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 658
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 3 cut(s) 263, 362, 423
Cac8I GCNNGC 5 cut(s) 400, 409, 607, 763, 778
CfoI GCGC 5 cut(s) 76, 229, 316, 400, 402
Cfr13I GGNCC 3 cut(s) 431, 533, 738
Cfr42I CCGCGG 1 cut(s) 312
Csp6I GTAC 3 cut(s) 262, 652, 754
CviAII CATG 4 cut(s) 403, 460, 570, 748
CviQI GTAC 3 cut(s) 262, 652, 754
DpnI GATC 3 cut(s) 71, 275, 384
DpnII GATC 3 cut(s) 69, 273, 382
EaeI YGGCCR 2 cut(s) 6, 656
EagI CGGCCG 1 cut(s) 6
EciI GGCGGA 2 cut(s) 5, 184
EclXI CGGCCG 1 cut(s) 6
Eco47I GGWCC 3 cut(s) 431, 533, 738
Eco52I CGGCCG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 571
FaeI CATG 4 cut(s) 406, 463, 573, 751
FaiI YATR 9 cut(s) 272, 381, 404, 461, 488, 571, 650, 664, 749
FatI CATG 4 cut(s) 402, 459, 569, 747
FauI CCCGC 1 cut(s) 614
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 7 cut(s) 9, 283, 312, 330, 440, 521, 524
FokI GGATG 3 cut(s) 270, 349, 430
Fsp4HI GCNGC 7 cut(s) 9, 283, 312, 330, 440, 521, 524
FspBI CTAG 1 cut(s) 793
GlaI GCGC 5 cut(s) 75, 228, 315, 399, 401
GluI GCNGC 7 cut(s) 9, 283, 312, 330, 440, 521, 524
HaeII RGCGCY 2 cut(s) 230, 317
HaeIII GGCC 2 cut(s) 8, 658
HapII CCGG 2 cut(s) 19, 79
HhaI GCGC 5 cut(s) 76, 229, 316, 400, 402
Hin1I GRCGYC 2 cut(s) 545, 788
Hin1II CATG 4 cut(s) 406, 463, 573, 751
Hin6I GCGC 5 cut(s) 74, 227, 314, 398, 400
HinP1I GCGC 5 cut(s) 74, 227, 314, 398, 400
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 2 cut(s) 374, 684
HpaII CCGG 2 cut(s) 19, 79
HphI GGTGA 3 cut(s) 52, 593, 602
Hpy166II GTNNAC 3 cut(s) 575, 738, 756
Hpy188I TCNGA 2 cut(s) 373, 683
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 3 cut(s) 575, 738, 756
Hpy99I CGWCG 3 cut(s) 224, 235, 439
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 3 cut(s) 545, 752, 788
HpyCH4V TGCA 2 cut(s) 442, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 404, 408
HpySE526I ACGT 3 cut(s) 545, 752, 788
Hsp92I GRCGYC 2 cut(s) 545, 788
Hsp92II CATG 4 cut(s) 406, 463, 573, 751
HspAI GCGC 5 cut(s) 74, 227, 314, 398, 400
KpnI GGTACC 1 cut(s) 265
KspI CCGCGG 1 cut(s) 312
Kzo9I GATC 3 cut(s) 69, 273, 382
LmnI GCTCC 2 cut(s) 21, 93
Lsp1109I GCAGC 3 cut(s) 426, 510, 532
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 793
MaeII ACGT 3 cut(s) 545, 752, 788
MaeIII GTNAC 2 cut(s) 42, 304
MalI GATC 3 cut(s) 71, 275, 384
MboI GATC 3 cut(s) 69, 273, 382
MboII GAAGA 5 cut(s) 139, 178, 514, 547, 605
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 658
MluCI AATT 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 658
Mox20I TGGCCA 1 cut(s) 658
Mph1103I ATGCAT 1 cut(s) 571
MscI TGGCCA 1 cut(s) 658
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 311, 523
MspI CCGG 2 cut(s) 19, 79
MspR9I CCNGG 2 cut(s) 79, 266
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 3 cut(s) 74, 311, 400
MwoI GCNNNNNNNGC 3 cut(s) 233, 404, 408
NciI CCSGG 1 cut(s) 79
NdeII GATC 3 cut(s) 69, 273, 382
NlaIII CATG 4 cut(s) 406, 463, 573, 751
NlaIV GGNNCC 2 cut(s) 263, 432
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 571
NspI RCATGY 1 cut(s) 573
PauI GCGCGC 1 cut(s) 398
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 374, 684
PkrI GCNGC 7 cut(s) 10, 284, 313, 331, 441, 522, 525
Ple19I CGATCG 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 263, 432
PspPI GGNCC 3 cut(s) 431, 533, 738
PteI GCGCGC 1 cut(s) 398
PvuI CGATCG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 3 cut(s) 263, 653, 755
RsaNI GTAC 3 cut(s) 262, 652, 754
RseI CAYNNNNRTG 1 cut(s) 746
SacII CCGCGG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 7 cut(s) 9, 283, 312, 330, 440, 521, 524
Sau3AI GATC 3 cut(s) 69, 273, 382
Sau96I GGNCC 3 cut(s) 431, 533, 738
ScrFI CCNGG 2 cut(s) 79, 266
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 611
Sfr303I CCGCGG 1 cut(s) 312
SgrBI CCGCGG 1 cut(s) 312
SinI GGWCC 3 cut(s) 431, 533, 738
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 793
StyD4I CCNGG 2 cut(s) 77, 264
TaiI ACGT 3 cut(s) 548, 755, 791
TaqI TCGA 3 cut(s) 222, 464, 494
TasI AATT 1 cut(s) 597
TatI WGTACW 1 cut(s) 651
TauI GCSGC 4 cut(s) 11, 285, 314, 332
TfiI GAWTC 2 cut(s) 374, 684
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 439, 520, 523
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 515, 676
TspGWI ACGGA 5 cut(s) 172, 208, 423, 546, 735
VpaK11BI GGWCC 3 cut(s) 431, 533, 738
XceI RCATGY 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 1 cut(s) 793
ZraI GACGTC 2 cut(s) 546, 789
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.