Rw6G005170

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009097
Physical Location & Seq
Forward (+)
8398362 .. 8400844
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005170.1

Sequence Viewer

Length: 774 bp
ATGTCCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCACCGCACACCTCCGCCGGGCCTCAAGGCCCAGCTCCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTCTTCCGTAAAGCCAAAGACTACGACCTCTCTCCTCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCCACCGGGCTCGTCGGCTGGTACCTGGGCCTCGTCAAGAACCGGCCCATTCTCACCAAGAGCGTCACCGCCTCCCTCATCTACACCGCCGCCGATTTGTCCTCCCAGACTATAGCGAAATCGGATACTTATGATCCTGTGAGGACATTGCGGATGGCTGGATATGGGATGCTGATTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTTTTCGACATTGAAGAAAATGGCTCTGGGGCAGGGACTTTATGGACCTACTATGACTGTTGTGTTCTTCTCTGTGAATGCATTTTTACAAGGTGAAAATGGTGGAGAAGTTTTTGATCGTTTAAAGCGAGACTTGGTCCCTACATTGTTAAGTGGTGTTATGTATTGGCCAGTGTGTGATTTTATCACATTCAGATTCATTCCTGTCCATTTGCAGACATTAGTGAGCAATGGATTTTCATATCTATGGACCATTTATTTGACATACATGGCAAGCCTGGAGAAAGCAAGTGCAATAGCTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

257

Amino Acids

28.54

Weight (kDa)

9.93

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 182 - 242 5.6e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AccII CGCG 1 cut(s) 123
AclI AACGTT 1 cut(s) 446
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 2 cut(s) 438, 632
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 83, 231
AgsI TTSAA 2 cut(s) 430, 478
AjnI CCWGG 2 cut(s) 249, 741
AluBI AGCT 2 cut(s) 100, 764
AluI AGCT 2 cut(s) 100, 764
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 1 cut(s) 353
AoxI GGCC 7 cut(s) 85, 93, 253, 269, 407, 438, 632
ApeKI GCWGC 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 706, 738
Asp718I GGTACC 1 cut(s) 246
AspLEI GCGC 2 cut(s) 11, 125
AspS9I GGNCC 8 cut(s) 85, 94, 253, 270, 407, 509, 601, 714
AsuC2I CCSGG 2 cut(s) 84, 232
AsuHPI GGTGA 5 cut(s) 25, 52, 271, 283, 569
AvaII GGWCC 3 cut(s) 509, 601, 714
BalI TGGCCA 2 cut(s) 440, 634
BanI GGYRCC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 237
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 402
BccI CCATC 2 cut(s) 65, 373
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 2 cut(s) 251, 743
BciVI GTATCC 1 cut(s) 343
BcnI CCSGG 2 cut(s) 84, 232
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 2 cut(s) 404, 765
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 12
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 4 cut(s) 222, 225, 315, 416
BlsI GCNGC 4 cut(s) 223, 226, 316, 417
Bme1390I CCNGG 4 cut(s) 84, 232, 251, 743
Bme18I GGWCC 3 cut(s) 509, 601, 714
BmgT120I GGNCC 8 cut(s) 85, 94, 253, 270, 407, 509, 601, 714
BmiI GGNNCC 2 cut(s) 248, 603
BmrFI CCNGG 4 cut(s) 84, 232, 251, 743
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 2 cut(s) 86, 764
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 84, 232
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 231
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 103, 635
Bse3DI GCAATG 2 cut(s) 371, 700
BseBI CCWGG 2 cut(s) 251, 743
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 384, 399
BseLI CCNNNNNNNGG 2 cut(s) 83, 231
BseMI GCAATG 2 cut(s) 371, 700
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 2 cut(s) 103, 635
BseRI GAGGAG 3 cut(s) 156, 172, 199
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 7 cut(s) 87, 95, 255, 271, 409, 440, 634
BshNI GGYRCC 1 cut(s) 246
BsiSI CCGG 4 cut(s) 6, 83, 231, 268
BslFI GGGAC 2 cut(s) 513, 587
BslI CCNNNNNNNGG 2 cut(s) 83, 231
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 2 cut(s) 513, 587
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 7 cut(s) 87, 95, 255, 271, 409, 440, 634
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 358, 580
BspANI GGCC 7 cut(s) 87, 95, 255, 271, 409, 440, 634
BspCNI CTCAG 1 cut(s) 6
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 248, 603
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 2 cut(s) 371, 700
BsrFI RCCGGY 1 cut(s) 267
BsrI ACTGG 2 cut(s) 103, 635
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 358, 580
Bst2UI CCWGG 2 cut(s) 251, 743
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 2 cut(s) 182, 217
BstC8I GCNNGC 1 cut(s) 739
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 384, 399
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 125
BstKTI GATC 2 cut(s) 361, 583
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 2 cut(s) 358, 580
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstNI CCWGG 2 cut(s) 251, 743
BstSCI CCNGG 4 cut(s) 82, 230, 249, 741
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 127
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 7 cut(s) 87, 95, 255, 271, 409, 440, 634
BtsCI GGATG 2 cut(s) 384, 399
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 739
CfoI GCGC 2 cut(s) 11, 125
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 8 cut(s) 85, 94, 253, 270, 407, 509, 601, 714
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 436, 733
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 360, 582
DpnII GATC 2 cut(s) 358, 580
DraI TTTAAA 1 cut(s) 588
EaeI YGGCCR 2 cut(s) 438, 632
Eam1104I CTCTTC 2 cut(s) 182, 217
EarI CTCTTC 2 cut(s) 182, 217
EciI GGCGGA 4 cut(s) 69, 175, 187, 208
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 509, 601, 714
EcoRII CCWGG 2 cut(s) 249, 741
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 2 cut(s) 439, 736
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FaqI GGGAC 2 cut(s) 513, 587
FatI CATG 2 cut(s) 435, 732
FauI CCCGC 2 cut(s) 44, 450
Fnu4HI GCNGC 4 cut(s) 222, 225, 315, 416
FokI GGATG 2 cut(s) 391, 406
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 4 cut(s) 222, 225, 315, 416
FspBI CTAG 2 cut(s) 404, 765
GlaI GCGC 2 cut(s) 10, 124
GluI GCNGC 4 cut(s) 222, 225, 315, 416
GsaI CCCAGC 1 cut(s) 100
GsuI CTGGAG 2 cut(s) 86, 764
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 7 cut(s) 87, 95, 255, 271, 409, 440, 634
HapII CCGG 4 cut(s) 6, 83, 231, 268
HgaI GACGC 1 cut(s) 277
HhaI GCGC 2 cut(s) 11, 125
Hin1II CATG 2 cut(s) 439, 736
Hin6I GCGC 2 cut(s) 9, 123
HinP1I GCGC 2 cut(s) 9, 123
HinfI GANTC 2 cut(s) 400, 660
HpaII CCGG 4 cut(s) 6, 83, 231, 268
HphI GGTGA 5 cut(s) 25, 52, 271, 283, 569
Hpy188I TCNGA 4 cut(s) 15, 349, 453, 659
Hpy188III TCNNGA 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 242, 415
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 4 cut(s) 418, 545, 679, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 2 cut(s) 439, 736
HspAI GCGC 2 cut(s) 9, 123
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 358, 580
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 1 cut(s) 384
MaeI CTAG 2 cut(s) 404, 765
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 360, 582
MboI GATC 2 cut(s) 358, 580
MboII GAAGA 7 cut(s) 30, 127, 169, 184, 204, 490, 523
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 2 cut(s) 440, 634
MluCI AATT 1 cut(s) 430
MluNI TGGCCA 2 cut(s) 440, 634
Mox20I TGGCCA 2 cut(s) 440, 634
Mph1103I ATGCAT 1 cut(s) 547
MscI TGGCCA 2 cut(s) 440, 634
MseI TTAA 2 cut(s) 587, 614
MslI CAYNNNNRTG 1 cut(s) 709
Msp20I TGGCCA 2 cut(s) 440, 634
MspI CCGG 4 cut(s) 6, 83, 231, 268
MspR9I CCNGG 4 cut(s) 84, 232, 251, 743
Mva1269I GAATGC 1 cut(s) 547
MvaI CCWGG 2 cut(s) 251, 743
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 415
NciI CCSGG 2 cut(s) 84, 232
NdeII GATC 2 cut(s) 358, 580
NlaIII CATG 2 cut(s) 439, 736
NlaIV GGNNCC 2 cut(s) 248, 603
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 589
PctI GAATGC 1 cut(s) 547
PfeI GAWTC 2 cut(s) 400, 660
PflFI GACNNNGTC 1 cut(s) 599
PkrI GCNGC 4 cut(s) 223, 226, 316, 417
Psp1406I AACGTT 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 249, 741
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 2 cut(s) 249, 741
PspN4I GGNNCC 2 cut(s) 248, 603
PspPI GGNCC 8 cut(s) 85, 94, 253, 270, 407, 509, 601, 714
PsyI GACNNNGTC 1 cut(s) 599
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 709
SaqAI TTAA 2 cut(s) 587, 614
SatI GCNGC 4 cut(s) 222, 225, 315, 416
Sau3AI GATC 2 cut(s) 358, 580
Sau96I GGNCC 8 cut(s) 85, 94, 253, 270, 407, 509, 601, 714
ScrFI CCNGG 4 cut(s) 84, 232, 251, 743
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 79, 102, 120, 162, 252, 449, 514, 559, 766
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 3 cut(s) 509, 601, 714
SmiMI CAYNNNNRTG 1 cut(s) 709
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 430
SspMI CTAG 2 cut(s) 404, 765
StyD4I CCNGG 4 cut(s) 82, 230, 249, 741
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 449
TaqI TCGA 1 cut(s) 470
TasI AATT 1 cut(s) 430
TauI GCSGC 3 cut(s) 224, 227, 317
TfiI GAWTC 2 cut(s) 400, 660
Tru1I TTAA 2 cut(s) 587, 614
Tru9I TTAA 2 cut(s) 587, 614
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 424, 652, 693
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 1 cut(s) 642
Tth111I GACNNNGTC 1 cut(s) 599
VpaK11BI GGWCC 3 cut(s) 509, 601, 714
XspI CTAG 2 cut(s) 404, 765
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.