Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009097

Physical Location & Seq

Genomic Coordinates Forward (+)

3124979 .. 3127465

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03950.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCTTACACAACCACACGCGCCACCGCCCGATCCCCACCTCTCCGGCGGCTCAGTTCCAGACCAAAGCCTACCTCCGAGCCCCCAATGTCTTCCGCAAAGCCAAAGACAACTACTCCCTCCTCTCCTCCTCCGCCTTCTTCTCCGCCAAGCCCTCCTCCTCTTCCTCCGCCGCGTCTTCCTCCACCGGCCTCGTCGCCTGGTATCTCGGCCTCGTCAAGAACCGCCCCGTTCTCACCAAGAGCATCACCGCCGCCCTCATTTACACCGCCGCCGATTTGTCCTCCCAGACTATTGCGAAATCGGATTCTTATGATCCTGTGAGGACATTAAGGATGGCCGCATATGGGATGGTGATTTTGGGGCCTTCGCTGCATTTTTGGTTCAATTTCATGGCCAAAACGTTTCCGAAACGTGATATGTTATCGACATTGAAGAAAATGGCTATGGGGCAGGGAGTGTATGGACCTACTATGACTGTTGTGTTCTTCTCTGTCAATGCGTTTTTACAAGGTGAAAATGGTGGAGAAGTTTTCGATCGTTTAAAGCGAGACTTGGTTCCTACATTGTTGAGTGGTGTTATGTATTGGCCAATGTGTGATTTCATCACATTTAGATTCATTCCTGTCCATTTGCAGACATTAGTGAGCAATGGATTTTCATATCTATGGACCATTTATTTGACATACATGGCAAGCCTGGAGAAAGCAAGTGCAGTAGCTATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

256

Amino Acids

28.33

Weight (kDa)

10.07

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14860 AT4G33905
fragaria_vesca	FvH4_2g03950 FvH4_2g03950 FvH4_2g03950 FvH4_2g03950
malus_domestica	MD05G1096500.v1.1 MD10G1102900.v1.1
prunus_persica	Prupe.8G141000_v2.0.a1
pyrus_communis	pycom05g09540 pycom10g08860
rosa_chinensis	RchiOBHm_Chr6g0253001
rosa_laevigata	RLG00000015045
rosa_multiflora	Rmu_co8421641.1_g000001 Rmu_sc0002560.1_g000009
rosa_roxburghii	Rroxscaffold_7G00212210
rosa_rugosa	Rorug05G0542800
rosa_samantha	Rh6AG056600 Rh6BG051000 Rh6CG049000 Rh6DG044700
rosa_wichuraiana	Rw6G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	58, 212
AclI	AACGTT	1 cut(s)	440
AclWI	GGATC	2 cut(s)	64, 347
AcoI	YGGCCR	3 cut(s)	375, 432, 626
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	424, 472
AjnI	CCWGG	2 cut(s)	236, 735
AluBI	AGCT	1 cut(s)	758
AluI	AGCT	1 cut(s)	758
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	2 cut(s)	64, 347
AoxI	GGCC	6 cut(s)	226, 247, 375, 401, 432, 626
ApeKI	GCWGC	1 cut(s)	409
ArsI	GACNNNNNNTTYG	2 cut(s)	700, 732
AspLEI	GCGC	2 cut(s)	11, 60
AspS9I	GGNCC	3 cut(s)	401, 503, 708
AsuHPI	GGTGA	5 cut(s)	25, 265, 277, 403, 563
AvaII	GGWCC	2 cut(s)	503, 708
BalI	TGGCCA	2 cut(s)	434, 628
BanII	GRGCYC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BbsI	GAAGAC	2 cut(s)	121, 207
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	367, 382
BciT130I	CCWGG	2 cut(s)	238, 737
BcoDI	GTCTC	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	6 cut(s)	87, 210, 291, 309, 378, 410
BlsI	GCNGC	6 cut(s)	88, 211, 292, 310, 379, 411
Bme1390I	CCNGG	2 cut(s)	238, 737
Bme18I	GGWCC	2 cut(s)	503, 708
BmgT120I	GGNCC	3 cut(s)	401, 503, 708
BmiI	GGNNCC	2 cut(s)	402, 597
BmrFI	CCNGG	2 cut(s)	238, 737
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	121, 207
BpmI	CTGGAG	1 cut(s)	758
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse118I	RCCGGY	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	2 cut(s)	238, 737
BseGI	GGATG	2 cut(s)	378, 393
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	2 cut(s)	5, 104
BseRI	GAGGAG	5 cut(s)	149, 154, 157, 184, 187
BseXI	GCAGC	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	58, 212
Bsh1285I	CGRYCG	1 cut(s)	577
BshFI	GGCC	6 cut(s)	228, 249, 377, 403, 434, 628
BsiEI	CGRYCG	1 cut(s)	577
BsiSI	CCGG	3 cut(s)	6, 83, 225
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	582
BsnI	GGCC	6 cut(s)	228, 249, 377, 403, 434, 628
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	69, 352, 574
BspANI	GGCC	6 cut(s)	228, 249, 377, 403, 434, 628
BspCNI	CTCAG	2 cut(s)	6, 103
BspFNI	CGCG	2 cut(s)	58, 212
BspLI	GGNNCC	2 cut(s)	402, 597
BspPI	GGATC	2 cut(s)	64, 347
BsrDI	GCAATG	1 cut(s)	694
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	3 cut(s)	69, 352, 574
Bst2UI	CCWGG	2 cut(s)	238, 737
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	2 cut(s)	14, 90
BstF5I	GGATG	2 cut(s)	378, 393
BstFNI	CGCG	2 cut(s)	58, 212
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 60
BstKTI	GATC	3 cut(s)	72, 355, 577
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	3 cut(s)	69, 352, 574
BstMCI	CGRYCG	1 cut(s)	577
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	2 cut(s)	238, 737
BstSCI	CCNGG	2 cut(s)	236, 735
BstUI	CGCG	2 cut(s)	58, 212
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	2 cut(s)	121, 207
BsuRI	GGCC	6 cut(s)	228, 249, 377, 403, 434, 628
BtsCI	GGATG	2 cut(s)	378, 393
Cac8I	GCNNGC	1 cut(s)	733
CfoI	GCGC	2 cut(s)	11, 60
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	3 cut(s)	401, 503, 708
CseI	GACGC	1 cut(s)	201
CviAII	CATG	2 cut(s)	430, 727
DdeI	CTNAG	2 cut(s)	14, 90
DpnI	GATC	3 cut(s)	71, 354, 576
DpnII	GATC	3 cut(s)	69, 352, 574
DraI	TTTAAA	1 cut(s)	582
EaeI	YGGCCR	3 cut(s)	375, 432, 626
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
EciI	GGCGGA	3 cut(s)	160, 172, 196
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	503, 708
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	236, 735
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	2 cut(s)	433, 730
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FatI	CATG	2 cut(s)	429, 726
FauI	CCCGC	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	6 cut(s)	87, 210, 291, 309, 378, 410
FokI	GGATG	2 cut(s)	385, 400
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	6 cut(s)	87, 210, 291, 309, 378, 410
GlaI	GCGC	2 cut(s)	10, 59
GluI	GCNGC	6 cut(s)	87, 210, 291, 309, 378, 410
GsuI	CTGGAG	1 cut(s)	758
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	228, 249, 377, 403, 434, 628
HapII	CCGG	3 cut(s)	6, 83, 225
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	2 cut(s)	11, 60
Hin1II	CATG	2 cut(s)	433, 730
Hin6I	GCGC	2 cut(s)	9, 58
HinP1I	GCGC	2 cut(s)	9, 58
HinfI	GANTC	2 cut(s)	344, 654
HpaII	CCGG	3 cut(s)	6, 83, 225
HphI	GGTGA	5 cut(s)	25, 265, 277, 403, 563
Hpy188I	TCNGA	4 cut(s)	15, 116, 343, 447
Hpy188III	TCNNGA	2 cut(s)	97, 256
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	184, 414
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	440, 451
HpyCH4V	TGCA	3 cut(s)	412, 673, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	2 cut(s)	14, 90
HpySE526I	ACGT	2 cut(s)	440, 451
Hsp92II	CATG	2 cut(s)	433, 730
HspAI	GCGC	2 cut(s)	9, 58
Kzo9I	GATC	3 cut(s)	69, 352, 574
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	2 cut(s)	440, 451
MalI	GATC	3 cut(s)	71, 354, 576
MboI	GATC	3 cut(s)	69, 352, 574
MboII	GAAGA	7 cut(s)	30, 121, 169, 192, 207, 484, 517
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	2 cut(s)	434, 628
MluCI	AATT	1 cut(s)	424
MluNI	TGGCCA	2 cut(s)	434, 628
Mox20I	TGGCCA	2 cut(s)	434, 628
MscI	TGGCCA	2 cut(s)	434, 628
MseI	TTAA	2 cut(s)	368, 581
MslI	CAYNNNNRTG	1 cut(s)	703
Msp20I	TGGCCA	2 cut(s)	434, 628
MspI	CCGG	3 cut(s)	6, 83, 225
MspR9I	CCNGG	2 cut(s)	238, 737
MvaI	CCWGG	2 cut(s)	238, 737
MvnI	CGCG	2 cut(s)	58, 212
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	3 cut(s)	69, 352, 574
NlaIII	CATG	2 cut(s)	433, 730
NlaIV	GGNNCC	2 cut(s)	402, 597
NmeAIII	GCCGAG	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	583
PfeI	GAWTC	2 cut(s)	344, 654
PkrI	GCNGC	6 cut(s)	88, 211, 292, 310, 379, 411
Ple19I	CGATCG	1 cut(s)	577
Psp1406I	AACGTT	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	236, 735
PspGI	CCWGG	2 cut(s)	236, 735
PspN4I	GGNNCC	2 cut(s)	402, 597
PspPI	GGNCC	3 cut(s)	401, 503, 708
PvuI	CGATCG	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	703
SaqAI	TTAA	2 cut(s)	368, 581
SatI	GCNGC	6 cut(s)	87, 210, 291, 309, 378, 410
Sau3AI	GATC	3 cut(s)	69, 352, 574
Sau96I	GGNCC	3 cut(s)	401, 503, 708
ScrFI	CCNGG	2 cut(s)	238, 737
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	7 cut(s)	80, 114, 443, 454, 508, 553, 760
SfaNI	GCATC	1 cut(s)	291
SinI	GGWCC	2 cut(s)	503, 708
SmiMI	CAYNNNNRTG	1 cut(s)	703
Sse9I	AATT	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	236, 735
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	443, 454
TaqI	TCGA	2 cut(s)	464, 573
TasI	AATT	1 cut(s)	424
TauI	GCSGC	5 cut(s)	89, 212, 293, 311, 380
TfiI	GAWTC	2 cut(s)	344, 654
Tru1I	TTAA	2 cut(s)	368, 581
Tru9I	TTAA	2 cut(s)	368, 581
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	418, 631, 646, 687
VpaK11BI	GGWCC	2 cut(s)	503, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.