Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009097

Physical Location & Seq

Genomic Coordinates Forward (+)

4770658 .. 4772983

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG044700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCACCACACACCTCCGAGGACGCCCCTCAGGGCCCAACTCCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTCTTCCGAAAAGCCAAAGACTACGACCTCTCTCCTCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCCACCGCCTCCACCGGGCTCGTGGGCTGGTACCTGGGCCTCGTCAAGAACCGGCCCGTTCTCACCAAGAGCGTCACCGCCGCCCTCATCTACACCGCCGCCGATTTGTCCTCCCAGACTATAGCGAAATCGGATACTTATGATCCTGTGAGGACATTGCGGATGGCTGGATATGGGATGGTGATTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTTTTCGACATTGAAGAAAATGGCTCTGGGGCAGGGACTTTATGGACCTACTATGACTGTTGTGTTCTTCTCTGTGAATGCATTTTTACAAGGTATTATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

193

Amino Acids

21.2

Weight (kDa)

10.53

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14860 AT4G33905
fragaria_vesca	FvH4_2g03950 FvH4_2g03950 FvH4_2g03950 FvH4_2g03950
malus_domestica	MD05G1096500.v1.1 MD10G1102900.v1.1
prunus_persica	Prupe.8G141000_v2.0.a1
pyrus_communis	pycom05g09540 pycom10g08860
rosa_chinensis	RchiOBHm_Chr6g0253001
rosa_laevigata	RLG00000015045
rosa_multiflora	Rmu_co8421641.1_g000001 Rmu_sc0002560.1_g000009
rosa_roxburghii	Rroxscaffold_7G00212210
rosa_rugosa	Rorug05G0542800
rosa_samantha	Rh6AG056600 Rh6BG051000 Rh6CG049000 Rh6DG044700
rosa_wichuraiana	Rw6G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AccII	CGCG	1 cut(s)	126
AclI	AACGTT	1 cut(s)	458
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	442, 490
AjnI	CCWGG	1 cut(s)	261
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	5 cut(s)	96, 265, 281, 419, 450
ApaI	GGGCCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	427
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	11, 128
AspS9I	GGNCC	6 cut(s)	96, 97, 265, 282, 419, 521
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	5 cut(s)	25, 52, 283, 295, 421
AvaII	GGWCC	1 cut(s)	521
AxyI	CCTNAGG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	100, 249
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BauI	CACGAG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	65, 385, 400
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	5 cut(s)	225, 228, 309, 327, 428
BlsI	GCNGC	5 cut(s)	226, 229, 310, 328, 429
Bme1390I	CCNGG	2 cut(s)	244, 263
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	6 cut(s)	96, 97, 265, 282, 419, 521
BmiI	GGNNCC	2 cut(s)	98, 260
BmrFI	CCNGG	2 cut(s)	244, 263
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	80, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	80, 262
BseGI	GGATG	2 cut(s)	396, 411
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	5, 106
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	159, 175, 202
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	5 cut(s)	98, 267, 283, 421, 452
BshNI	GGYRCC	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	6, 243, 280
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	5 cut(s)	98, 267, 283, 421, 452
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	100, 249
Bsp143I	GATC	1 cut(s)	370
BspANI	GGCC	5 cut(s)	98, 267, 283, 421, 452
BspCNI	CTCAG	2 cut(s)	6, 105
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	98, 260
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	80, 262
BssMI	GATC	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	2 cut(s)	185, 220
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	14, 92
BstF5I	GGATG	2 cut(s)	396, 411
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 128
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 427
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	242, 261
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	130
Bsu36I	CCTNAGG	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	5 cut(s)	98, 267, 283, 421, 452
BtsCI	GGATG	2 cut(s)	396, 411
CfoI	GCGC	2 cut(s)	11, 128
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	6 cut(s)	96, 97, 265, 282, 419, 521
CseI	GACGC	2 cut(s)	94, 289
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	14, 92
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	185, 220
EarI	CTCTTC	2 cut(s)	185, 220
EciI	GGCGGA	3 cut(s)	178, 190, 211
Eco24I	GRGCYC	2 cut(s)	100, 249
Eco47I	GGWCC	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	100, 249
FaeI	CATG	1 cut(s)	451
FaiI	YATR	9 cut(s)	44, 350, 369, 402, 449, 476, 519, 530, 580
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	1 cut(s)	447
FauI	CCCGC	2 cut(s)	44, 462
Fnu4HI	GCNGC	5 cut(s)	225, 228, 309, 327, 428
FokI	GGATG	2 cut(s)	403, 418
FriOI	GRGCYC	2 cut(s)	100, 249
Fsp4HI	GCNGC	5 cut(s)	225, 228, 309, 327, 428
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	2 cut(s)	10, 127
GluI	GCNGC	5 cut(s)	225, 228, 309, 327, 428
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	5 cut(s)	98, 267, 283, 421, 452
HapII	CCGG	3 cut(s)	6, 243, 280
HgaI	GACGC	2 cut(s)	94, 289
HhaI	GCGC	2 cut(s)	11, 128
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	2 cut(s)	9, 126
HinP1I	GCGC	2 cut(s)	9, 126
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	3 cut(s)	6, 243, 280
HphI	GGTGA	5 cut(s)	25, 52, 283, 295, 421
Hpy188I	TCNGA	5 cut(s)	15, 81, 143, 361, 465
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	2 cut(s)	430, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 427
HpyF3I	CTNAG	2 cut(s)	14, 92
HpySE526I	ACGT	1 cut(s)	458
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	2 cut(s)	9, 126
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	7 cut(s)	30, 130, 172, 187, 207, 502, 535
MhlI	GDGCHC	2 cut(s)	100, 249
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	452
Mox20I	TGGCCA	1 cut(s)	452
Mph1103I	ATGCAT	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	3 cut(s)	6, 243, 280
MspR9I	CCNGG	2 cut(s)	244, 263
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	233, 427
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	2 cut(s)	98, 260
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	559
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	226, 229, 310, 328, 429
Psp1406I	AACGTT	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	98, 260
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	6 cut(s)	96, 97, 265, 282, 419, 521
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	5 cut(s)	225, 228, 309, 327, 428
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	6 cut(s)	96, 97, 265, 282, 419, 521
ScrFI	CCNGG	2 cut(s)	244, 263
SduI	GDGCHC	2 cut(s)	100, 249
SetI	ASST	7 cut(s)	79, 123, 165, 264, 461, 526, 571
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	521
Sse9I	AATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	242, 261
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	1 cut(s)	482
TasI	AATT	1 cut(s)	442
TauI	GCSGC	4 cut(s)	227, 230, 311, 329
TfiI	GAWTC	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.