Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009097

Physical Location & Seq

Genomic Coordinates Forward (+)

11682718 .. 11684594

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACGGCCGCTTTCCGCCGGAGCACCAACCTCACCCGCCTGTTACACAAGAACTCCATCACGGACCCGATCGCGGCCCCGACACTGCTCCAAACCCAAACCCAGACCCAGACCCCCTCCAAAGCCTACCTCCGCTTCCCTCAAGTCTTCCGCAAAGCCAGAGACTGCGACCTCTCCCCCTCCGTCTTCTCCTCCGCCTTCTCCTCCTCCAAGTCCTCCGTCGAAGCGCCGTCGGCTTCCAAGTTCGGGTTCGTGGGATGGTACCTGGGTATGATCCAGTGCCGCCCCATTTTGACCAAGAGTGTGACCGCGGCGCTCATTTACACCGCCGCCGATTTGTCCTCCCAGACATTAGCAAAATCATCCTTTTCCGAATCTTATGATCTTGTAAGGACAGCGCGCATGGCTGGCTATGGGATGCTGGTTTTGGGTCCGTCGCTGCATTTCTGGTTCAATTTCATGTCGAAAGCTTTACCGAAACGAGATGTGTTTTCGACATTGAAGAAAATGGCAATGGGGCAGCTGCTTTACGGACCTACAATGACGTGTGTTTTCTTCTCCTTGAATGCATGTCTACAAGGTGAAAATGGTGAAGAAATTGTTGCCCGCCTACAGCGAGACTTGTTCCCTACATTGTTAAACGGTGTTATGTACTGGCCAGTATGTGATTTTATCACATTCCGATTCATTCCTGTCCATTTACAGCCATTAGTGAGCAACGGATTTTCGTATCTGTGGACCATTTACATGACGTACATGGCAGGCTTGGAGAAAGCTGGCACAACGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

264

Amino Acids

29.32

Weight (kDa)

9.57

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14860 AT4G33905
fragaria_vesca	FvH4_2g03950 FvH4_2g03950 FvH4_2g03950 FvH4_2g03950
malus_domestica	MD05G1096500.v1.1 MD10G1102900.v1.1
prunus_persica	Prupe.8G141000_v2.0.a1
pyrus_communis	pycom05g09540 pycom10g08860
rosa_chinensis	RchiOBHm_Chr6g0253001
rosa_laevigata	RLG00000015045
rosa_multiflora	Rmu_co8421641.1_g000001 Rmu_sc0002560.1_g000009
rosa_roxburghii	Rroxscaffold_7G00212210
rosa_rugosa	Rorug05G0542800
rosa_samantha	Rh6AG056600 Rh6BG051000 Rh6CG049000 Rh6DG044700
rosa_wichuraiana	Rw6G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	574
AccII	CGCG	3 cut(s)	74, 311, 400
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	2 cut(s)	6, 656
AfaI	GTAC	3 cut(s)	263, 653, 755
AfiI	CCNNNNNNNGG	2 cut(s)	73, 246
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	3 cut(s)	454, 502, 565
AjiI	CACGTC	1 cut(s)	546
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	470, 523, 776
AluI	AGCT	3 cut(s)	470, 523, 776
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	156, 612
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	165
AoxI	GGCC	3 cut(s)	6, 75, 656
ApeKI	GCWGC	3 cut(s)	439, 520, 523
Asp718I	GGTACC	1 cut(s)	261
AspLEI	GCGC	4 cut(s)	229, 316, 400, 402
AspS9I	GGNCC	5 cut(s)	64, 76, 431, 533, 738
AsuHPI	GGTGA	3 cut(s)	25, 593, 602
AvaII	GGWCC	4 cut(s)	64, 431, 533, 738
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BalI	TGGCCA	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	261
BbsI	GAAGAC	2 cut(s)	139, 178
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	426, 510, 532
BccI	CCATC	2 cut(s)	65, 252
BceAI	ACGGC	2 cut(s)	21, 214
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	156, 612
BfaI	CTAG	1 cut(s)	790
BfmI	CTRYAG	1 cut(s)	611
BfoI	RGCGCY	2 cut(s)	230, 317
BisI	GCNGC	8 cut(s)	9, 75, 283, 312, 330, 440, 521, 524
BlsI	GCNGC	8 cut(s)	10, 76, 284, 313, 331, 441, 522, 525
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	4 cut(s)	64, 431, 533, 738
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	5 cut(s)	64, 76, 431, 533, 738
BmiI	GGNNCC	4 cut(s)	66, 78, 263, 432
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	2 cut(s)	139, 178
BpuEI	CTTGAG	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	265, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 246
Bse1I	ACTGG	3 cut(s)	277, 659, 659
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	265, 309
BseGI	GGATG	3 cut(s)	263, 362, 423
BseLI	CCNNNNNNNGG	2 cut(s)	73, 246
BseMI	GCAATG	1 cut(s)	519
BseNI	ACTGG	3 cut(s)	277, 659, 659
BsePI	GCGCGC	1 cut(s)	398
BseRI	GAGGAG	3 cut(s)	181, 193, 196
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	426, 510, 532
Bsh1236I	CGCG	3 cut(s)	74, 311, 400
Bsh1285I	CGRYCG	2 cut(s)	9, 72
BshFI	GGCC	3 cut(s)	8, 77, 658
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	2 cut(s)	9, 72
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	73, 246
BsmAI	GTCTC	2 cut(s)	156, 612
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	3 cut(s)	8, 77, 658
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	69, 273, 382
BspANI	GGCC	3 cut(s)	8, 77, 658
BspFNI	CGCG	3 cut(s)	74, 311, 400
BspLI	GGNNCC	4 cut(s)	66, 78, 263, 432
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	3 cut(s)	277, 659, 659
BssECI	CCNNGG	2 cut(s)	265, 309
BssHII	GCGCGC	1 cut(s)	398
BssMI	GATC	3 cut(s)	69, 273, 382
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	644
BstC8I	GCNNGC	5 cut(s)	400, 409, 607, 763, 778
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	263, 362, 423
BstFNI	CGCG	3 cut(s)	74, 311, 400
BstH2I	RGCGCY	2 cut(s)	230, 317
BstHHI	GCGC	4 cut(s)	229, 316, 400, 402
BstKTI	GATC	3 cut(s)	72, 276, 385
BstMAI	GTCTC	2 cut(s)	156, 612
BstMBI	GATC	3 cut(s)	69, 273, 382
BstMCI	CGRYCG	2 cut(s)	9, 72
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 404, 408
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	611
BstUI	CGCG	3 cut(s)	74, 311, 400
BstV1I	GCAGC	3 cut(s)	426, 510, 532
BstV2I	GAAGAC	2 cut(s)	139, 178
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	8, 77, 658
BtgI	CCRYGG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	263, 362, 423
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	2 cut(s)	83, 284
Cac8I	GCNNGC	5 cut(s)	400, 409, 607, 763, 778
CaiI	CAGNNNCTG	1 cut(s)	165
CfoI	GCGC	4 cut(s)	229, 316, 400, 402
Cfr13I	GGNCC	5 cut(s)	64, 76, 431, 533, 738
Cfr42I	CCGCGG	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	262, 652, 754
CviAII	CATG	5 cut(s)	403, 460, 570, 748, 757
CviQI	GTAC	3 cut(s)	262, 652, 754
DpnI	GATC	3 cut(s)	71, 275, 384
DpnII	GATC	3 cut(s)	69, 273, 382
EaeI	YGGCCR	2 cut(s)	6, 656
EagI	CGGCCG	1 cut(s)	6
EciI	GGCGGA	2 cut(s)	5, 184
EclXI	CGGCCG	1 cut(s)	6
Eco47I	GGWCC	4 cut(s)	64, 431, 533, 738
Eco52I	CGGCCG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	571
FaeI	CATG	5 cut(s)	406, 463, 573, 751, 760
FatI	CATG	5 cut(s)	402, 459, 569, 747, 756
FauI	CCCGC	2 cut(s)	44, 614
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	8 cut(s)	9, 75, 283, 312, 330, 440, 521, 524
FokI	GGATG	3 cut(s)	270, 349, 430
Fsp4HI	GCNGC	8 cut(s)	9, 75, 283, 312, 330, 440, 521, 524
FspBI	CTAG	1 cut(s)	790
GlaI	GCGC	4 cut(s)	228, 315, 399, 401
GluI	GCNGC	8 cut(s)	9, 75, 283, 312, 330, 440, 521, 524
HaeII	RGCGCY	2 cut(s)	230, 317
HaeIII	GGCC	3 cut(s)	8, 77, 658
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	4 cut(s)	229, 316, 400, 402
Hin1II	CATG	5 cut(s)	406, 463, 573, 751, 760
Hin6I	GCGC	4 cut(s)	227, 314, 398, 400
HinP1I	GCGC	4 cut(s)	227, 314, 398, 400
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	2 cut(s)	374, 684
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	3 cut(s)	25, 593, 602
Hpy166II	GTNNAC	2 cut(s)	575, 738
Hpy188I	TCNGA	2 cut(s)	373, 683
Hpy8I	GTNNAC	2 cut(s)	575, 738
Hpy99I	CGWCG	3 cut(s)	224, 235, 439
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	3 cut(s)	545, 752, 785
HpyCH4V	TGCA	2 cut(s)	442, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 404, 408
HpySE526I	ACGT	3 cut(s)	545, 752, 785
Hsp92II	CATG	5 cut(s)	406, 463, 573, 751, 760
HspAI	GCGC	4 cut(s)	227, 314, 398, 400
KpnI	GGTACC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	69, 273, 382
LmnI	GCTCC	2 cut(s)	21, 93
Lsp1109I	GCAGC	3 cut(s)	426, 510, 532
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	790
MaeII	ACGT	3 cut(s)	545, 752, 785
MaeIII	GTNAC	2 cut(s)	42, 304
MalI	GATC	3 cut(s)	71, 275, 384
MboI	GATC	3 cut(s)	69, 273, 382
MboII	GAAGA	5 cut(s)	139, 178, 514, 547, 605
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	2 cut(s)	454, 597
MluNI	TGGCCA	1 cut(s)	658
Mox20I	TGGCCA	1 cut(s)	658
Mph1103I	ATGCAT	1 cut(s)	571
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	746
Msp20I	TGGCCA	1 cut(s)	658
MspA1I	CMGCKG	2 cut(s)	311, 523
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	3 cut(s)	74, 311, 400
MwoI	GCNNNNNNNGC	3 cut(s)	233, 404, 408
NdeII	GATC	3 cut(s)	69, 273, 382
NlaIII	CATG	5 cut(s)	406, 463, 573, 751, 760
NlaIV	GGNNCC	4 cut(s)	66, 78, 263, 432
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	1 cut(s)	573
PauI	GCGCGC	1 cut(s)	398
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	374, 684
PkrI	GCNGC	8 cut(s)	10, 76, 284, 313, 331, 441, 522, 525
Ple19I	CGATCG	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	66, 78, 263, 432
PspPI	GGNCC	5 cut(s)	64, 76, 431, 533, 738
PstNI	CAGNNNCTG	1 cut(s)	165
PteI	GCGCGC	1 cut(s)	398
PvuI	CGATCG	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	3 cut(s)	263, 653, 755
RsaNI	GTAC	3 cut(s)	262, 652, 754
RseI	CAYNNNNRTG	1 cut(s)	746
SacII	CCGCGG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	8 cut(s)	9, 75, 283, 312, 330, 440, 521, 524
Sau3AI	GATC	3 cut(s)	69, 273, 382
Sau96I	GGNCC	5 cut(s)	64, 76, 431, 533, 738
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	611
Sfr303I	CCGCGG	1 cut(s)	312
SgrBI	CCGCGG	1 cut(s)	312
SinI	GGWCC	4 cut(s)	64, 431, 533, 738
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	454, 597
SspMI	CTAG	1 cut(s)	790
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	3 cut(s)	548, 755, 788
TaqI	TCGA	3 cut(s)	222, 464, 494
TasI	AATT	2 cut(s)	454, 597
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	5 cut(s)	11, 77, 285, 314, 332
TfiI	GAWTC	2 cut(s)	374, 684
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	2 cut(s)	90, 284
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	439, 520, 523
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	448, 676
TspGWI	ACGGA	6 cut(s)	77, 172, 208, 423, 546, 735
TspRI	CASTG	2 cut(s)	90, 284
VpaK11BI	GGWCC	4 cut(s)	64, 431, 533, 738
XceI	RCATGY	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	574
XspI	CTAG	1 cut(s)	790
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.