Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009097

Physical Location & Seq

Genomic Coordinates Forward (+)

12737016 .. 12738258

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACGGCCGCTTTACGCTGGAGCACCAACCTCACCCGCCTGTTACAGAAGAACTCCATCACCGACCCGTTCGGAGCCCCGAAGCTGCTCCAAACCCAAACCCAAACCCACTCCAAAGCCTACCTCCGCTTCCCTCAAGTCTTCCGCAAAGCCAGAGACTACGACCTGTCCCCCTCTGTCTTCTCCTCCGCCTTCTCCTCCGCCAAGTCCTCCGTCGAAGCTCCGTCGGTCTCCAAGCTTGGGTTCGTGGGATGGTACCTGGGTATGATCCAGTCCCGCCCCGTTTTGACCAAGAGTGTCACCGCGGCGCTTATTTACACCGCCGCCGATTTGTCCTCCCAGACATTAGCAAAATCATCCTTTTCAGAATCTTATCGATCTTGTAAGGACTGCGCGCATGGCTGGATATGGGATGCTGGTTTTGGGTCCGTCGTTGCATTTCTGGTTCAATTTCATGTCGAAATCTTACCCGAAACGGGATATGTTTTCGACATTGAAGAAAATGGCAATGGGGCAGGTGCTTTTTGGACCTACAATGACGTTTGCTTTCTTCTCCTTGAATGCATGTCTACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

193

Amino Acids

21.25

Weight (kDa)

8.34

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14860 AT4G33905
fragaria_vesca	FvH4_2g03950 FvH4_2g03950 FvH4_2g03950 FvH4_2g03950
malus_domestica	MD05G1096500.v1.1 MD10G1102900.v1.1
prunus_persica	Prupe.8G141000_v2.0.a1
pyrus_communis	pycom05g09540 pycom10g08860
rosa_chinensis	RchiOBHm_Chr6g0253001
rosa_laevigata	RLG00000015045
rosa_multiflora	Rmu_co8421641.1_g000001 Rmu_sc0002560.1_g000009
rosa_roxburghii	Rroxscaffold_7G00212210
rosa_rugosa	Rorug05G0542800
rosa_samantha	Rh6AG056600 Rh6BG051000 Rh6CG049000 Rh6DG044700
rosa_wichuraiana	Rw6G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	506
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	569
AccII	CGCG	2 cut(s)	305, 395
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	240, 476
AgsI	TTSAA	3 cut(s)	449, 497, 560
AjnI	CCWGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	85, 221, 238
AluI	AGCT	3 cut(s)	85, 221, 238
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	150, 235
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	85
Asp718I	GGTACC	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	310, 395, 397
AspS9I	GGNCC	2 cut(s)	426, 528
AsuHPI	GGTGA	3 cut(s)	25, 52, 292
AvaII	GGWCC	2 cut(s)	426, 528
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	133, 172
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	65, 246
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	150, 235
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	506
BisI	GCNGC	4 cut(s)	9, 86, 306, 324
BlsI	GCNGC	4 cut(s)	10, 87, 307, 325
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	426, 528
BmgT120I	GGNCC	2 cut(s)	426, 528
BmiI	GGNNCC	3 cut(s)	76, 257, 427
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	2 cut(s)	133, 172
BpmI	CTGGAG	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	259, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 476
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	259, 303
BseGI	GGATG	3 cut(s)	257, 356, 418
BseLI	CCNNNNNNNGG	2 cut(s)	240, 476
BseMI	GCAATG	1 cut(s)	514
BseNI	ACTGG	1 cut(s)	271
BsePI	GCGCGC	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	175, 187
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	72
Bsh1236I	CGCG	2 cut(s)	305, 395
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	154, 259
BslI	CCNNNNNNNGG	2 cut(s)	240, 476
BsmAI	GTCTC	2 cut(s)	150, 235
BsmFI	GGGAC	2 cut(s)	154, 259
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	26, 79
Bsp143I	GATC	2 cut(s)	267, 377
BspANI	GGCC	1 cut(s)	8
BspDI	ATCGAT	1 cut(s)	376
BspFNI	CGCG	2 cut(s)	305, 395
BspLI	GGNNCC	3 cut(s)	76, 257, 427
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	259, 303
BssHII	GCGCGC	1 cut(s)	393
BssMI	GATC	2 cut(s)	267, 377
Bst2UI	CCWGG	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	395
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	257, 356, 418
BstFNI	CGCG	2 cut(s)	305, 395
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	3 cut(s)	310, 395, 397
BstKTI	GATC	2 cut(s)	270, 380
BstMAI	GTCTC	2 cut(s)	150, 235
BstMBI	GATC	2 cut(s)	267, 377
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	2 cut(s)	305, 395
BstV1I	GCAGC	1 cut(s)	72
BstV2I	GAAGAC	2 cut(s)	133, 172
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	257, 356, 418
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	3 cut(s)	310, 395, 397
Cfr13I	GGNCC	2 cut(s)	426, 528
Cfr42I	CCGCGG	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	3 cut(s)	398, 455, 565
CviJI	RGCY	8 cut(s)	8, 77, 85, 119, 152, 221, 238, 402
CviKI_1	RGCY	8 cut(s)	8, 77, 85, 119, 152, 221, 238, 402
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	2 cut(s)	269, 379
DpnII	GATC	2 cut(s)	267, 377
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
EciI	GGCGGA	2 cut(s)	178, 190
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	426, 528
Eco52I	CGGCCG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	401, 458, 568
FaiI	YATR	6 cut(s)	266, 399, 409, 456, 483, 566
FaqI	GGGAC	2 cut(s)	154, 259
FatI	CATG	3 cut(s)	397, 454, 564
FauI	CCCGC	2 cut(s)	44, 284
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	4 cut(s)	9, 86, 306, 324
FokI	GGATG	3 cut(s)	264, 343, 425
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	4 cut(s)	9, 86, 306, 324
GlaI	GCGC	3 cut(s)	309, 394, 396
GluI	GCNGC	4 cut(s)	9, 86, 306, 324
GsuI	CTGGAG	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	3 cut(s)	310, 395, 397
Hin1II	CATG	3 cut(s)	401, 458, 568
Hin6I	GCGC	3 cut(s)	308, 393, 395
HinP1I	GCGC	3 cut(s)	308, 393, 395
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	3 cut(s)	25, 52, 292
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	2 cut(s)	74, 367
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	3 cut(s)	218, 229, 434
HpyAV	CCTTC	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	2 cut(s)	437, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	401, 458, 568
HspAI	GCGC	3 cut(s)	308, 393, 395
KpnI	GGTACC	1 cut(s)	259
KspI	CCGCGG	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	267, 377
LmnI	GCTCC	4 cut(s)	21, 74, 93, 226
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	42, 298
MalI	GATC	2 cut(s)	269, 379
MboI	GATC	2 cut(s)	267, 377
MboII	GAAGA	5 cut(s)	61, 133, 172, 509, 542
MhlI	GDGCHC	2 cut(s)	26, 79
MluCI	AATT	1 cut(s)	449
MnlI	CCTC	8 cut(s)	41, 134, 144, 184, 196, 208, 220, 346
Mph1103I	ATGCAT	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	305, 395
MwoI	GCNNNNNNNGC	1 cut(s)	399
NdeII	GATC	2 cut(s)	267, 377
NlaIII	CATG	3 cut(s)	401, 458, 568
NlaIV	GGNNCC	3 cut(s)	76, 257, 427
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	568
PaqCI	CACCTGC	1 cut(s)	506
PauI	GCGCGC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	10, 87, 307, 325
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	76, 257, 427
PspPI	GGNCC	2 cut(s)	426, 528
PteI	GCGCGC	1 cut(s)	393
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SacII	CCGCGG	1 cut(s)	306
SatI	GCNGC	4 cut(s)	9, 86, 306, 324
Sau3AI	GATC	2 cut(s)	267, 377
Sau96I	GGNCC	2 cut(s)	426, 528
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	26, 79
SfaNI	GCATC	1 cut(s)	403
Sfr303I	CCGCGG	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	426, 528
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	4 cut(s)	216, 376, 459, 489
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	1 cut(s)	449
TauI	GCSGC	3 cut(s)	11, 308, 326
TfiI	GAWTC	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	3 cut(s)	202, 213, 418
VpaK11BI	GGWCC	2 cut(s)	426, 528
XceI	RCATGY	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.