AT4G33905

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009097
Physical Location & Seq
Reverse (-)
16253752 .. 16255760
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33905.1

Sequence Viewer

Length: 786 bp
ATGACCGGCGCATTGTTTAGAAACGCTGCTTCCGACGCCGCTCGGATCTTTCGATTACAGCGAGCAACGATGACGAATCCTTTTGGAAAGCTCGACCCTTTACCGATAGGAGGAAACATCCAGCGATTGCAGTCGAGGCCTTTTTATCGTACGCCTCAGTTTCTCGGGAAAGCAAAGGAAACAGGTGTCTCTGGTTTCTGTTCGTCTTCGTCTTCGTCTTCTTCGACGGTCTCTACAGCAGGATTCATCGGATGGTATTTGGGAATGGTGAAATCTCGGCCGGTTCTTACCAAATCCGTCACGTCCTCGCTTATTTACATAGCAGCCGATTTGTCTTCGCAGACAATTCCACAAGCTTCAGTGGATTCTTATGACTTGGTAAGAACAGCAAGGATGGGAGGATATGGGTTATTAATCTTGGGTCCTACACTTCACTATTGGTTCAATCTCATGTCAAGTCTCTTCCCAAAACGAGATTTGATCACAACGTTTAAGAAAATGGCCATGGGACAGACAGTCTATGGGCCTGCCATGAATGTTGTTTTCTTCTCACTGAATGCAGCCCTACAGGGTGAAAATGGTTCAGAGATAGTTGCTAGATTGAAAAGGGACCTACTTCCCACAATGCTTAATGGTGTCATGTATTGGCCTTTGTGTGATTTTATTACTTTCAAGTTCTGCCCTGTTTATTTACAGCCACTTGTGAGCAACTCGTTTTCGTATCTATGGACAATCTACATAACTTATATGGCAAGCCGTGCGACGCCAACCGCCATTGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

261

Amino Acids

28.83

Weight (kDa)

9.79

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 188 - 247 1.4e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AciI CCGC 2 cut(s) 39, 771
AclI AACGTT 1 cut(s) 488
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 2 cut(s) 278, 501
AcsI RAATTY 1 cut(s) 780
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 2 cut(s) 36, 764
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 4 cut(s) 445, 604, 673, 779
AhdI GACNNNNNGTC 1 cut(s) 515
AjiI CACGTC 1 cut(s) 303
AluBI AGCT 2 cut(s) 91, 356
AluI AGCT 2 cut(s) 91, 356
Alw26I GTCTC 3 cut(s) 193, 235, 464
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 5 cut(s) 137, 278, 501, 524, 647
ApeKI GCWGC 3 cut(s) 26, 323, 560
ApoI RAATTY 1 cut(s) 780
AseI ATTAAT 1 cut(s) 413
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 422, 524, 610
AsuHPI GGTGA 2 cut(s) 280, 584
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 422, 610
BalI TGGCCA 1 cut(s) 503
BbsI GAAGAC 4 cut(s) 198, 204, 210, 327
BbvI GCAGC 3 cut(s) 13, 335, 572
BccI CCATC 2 cut(s) 246, 388
BceAI ACGGC 1 cut(s) 741
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 193, 235, 464
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 2 cut(s) 234, 566
BisI GCNGC 4 cut(s) 27, 39, 324, 561
BlsI GCNGC 4 cut(s) 28, 40, 325, 562
Bme18I GGWCC 2 cut(s) 422, 610
BmeRI GACNNNNNGTC 1 cut(s) 515
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 3 cut(s) 422, 524, 610
BmiI GGNNCC 2 cut(s) 423, 611
BpiI GAAGAC 4 cut(s) 198, 204, 210, 327
BsaHI GRCGYC 2 cut(s) 36, 764
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 504
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 2 cut(s) 5, 280
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 117, 257, 399
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 13, 335, 572
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 5 cut(s) 139, 280, 503, 526, 649
BsiEI CGRYCG 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 6, 281
BsiWI CGTACG 1 cut(s) 149
BslFI GGGAC 2 cut(s) 522, 623
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 3 cut(s) 193, 235, 464
BsmFI GGGAC 2 cut(s) 522, 623
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 5 cut(s) 139, 280, 503, 526, 649
Bso31I GGTCTC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 2 cut(s) 45, 480
Bsp19I CCATGG 1 cut(s) 504
BspACI CCGC 2 cut(s) 39, 771
BspANI GGCC 5 cut(s) 139, 280, 503, 526, 649
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 423, 611
BspPI GGATC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 5, 280
BssAI RCCGGY 2 cut(s) 5, 280
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 2 cut(s) 45, 480
BssNI GRCGYC 2 cut(s) 36, 764
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 229, 517
Bst6I CTCTTC 1 cut(s) 467
BstACI GRCGYC 2 cut(s) 36, 764
BstAPI GCANNNNNTGC 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 63, 528, 754
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 3 cut(s) 117, 257, 399
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 48, 483
BstMAI GTCTC 3 cut(s) 193, 235, 464
BstMBI GATC 2 cut(s) 45, 480
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 3 cut(s) 35, 136, 758
BstSFI CTRYAG 2 cut(s) 234, 566
BstV1I GCAGC 3 cut(s) 13, 335, 572
BstV2I GAAGAC 4 cut(s) 198, 204, 210, 327
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 5 cut(s) 139, 280, 503, 526, 649
BtgI CCRYGG 1 cut(s) 504
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 3 cut(s) 117, 257, 399
BtsIMutI CAGTG 2 cut(s) 366, 551
Cac8I GCNNGC 3 cut(s) 63, 528, 754
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 2 cut(s) 5, 280
Cfr13I GGNCC 3 cut(s) 422, 524, 610
CseI GACGC 2 cut(s) 44, 772
Csp6I GTAC 1 cut(s) 150
CviAII CATG 4 cut(s) 451, 505, 532, 640
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 47, 482
DpnII GATC 2 cut(s) 45, 480
DriI GACNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 2 cut(s) 278, 501
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 467
Eam1105I GACNNNNNGTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 467
EclXI CGGCCG 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 504
Eco147I AGGCCT 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 422, 610
Eco52I CGGCCG 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 164
EcoO109I RGGNCCY 2 cut(s) 422, 610
EcoT14I CCWWGG 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 4 cut(s) 454, 508, 535, 643
FaqI GGGAC 2 cut(s) 522, 623
FatI CATG 4 cut(s) 450, 504, 531, 639
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 4 cut(s) 27, 39, 324, 561
FokI GGATG 3 cut(s) 104, 264, 406
Fsp4HI GCNGC 4 cut(s) 27, 39, 324, 561
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 10
GluI GCNGC 4 cut(s) 27, 39, 324, 561
HaeIII GGCC 5 cut(s) 139, 280, 503, 526, 649
HapII CCGG 2 cut(s) 6, 281
HgaI GACGC 2 cut(s) 44, 772
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 2 cut(s) 36, 764
Hin1II CATG 4 cut(s) 454, 508, 535, 643
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 3 cut(s) 76, 243, 365
HpaII CCGG 2 cut(s) 6, 281
HphI GGTGA 2 cut(s) 280, 584
Hpy188I TCNGA 4 cut(s) 34, 45, 251, 586
Hpy188III TCNNGA 1 cut(s) 166
Hpy99I CGWCG 3 cut(s) 38, 229, 766
HpyCH4III ACNGT 2 cut(s) 229, 517
HpyCH4IV ACGT 2 cut(s) 302, 488
HpyCH4V TGCA 2 cut(s) 130, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 136, 758
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 302, 488
Hsp92I GRCGYC 2 cut(s) 36, 764
Hsp92II CATG 4 cut(s) 454, 508, 535, 643
HspAI GCGC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 2 cut(s) 45, 480
LpnPI CCDG 9 cut(s) 19, 134, 168, 177, 225, 294, 540, 554, 696
Lsp1109I GCAGC 3 cut(s) 13, 335, 572
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 302, 488
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 47, 482
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 45, 480
MboII GAAGA 7 cut(s) 198, 204, 210, 213, 327, 454, 538
MflI RGATCY 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 2 cut(s) 345, 780
MluNI TGGCCA 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 104, 129, 165, 316, 392
Mox20I TGGCCA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 503
MseI TTAA 3 cut(s) 413, 492, 630
Msp20I TGGCCA 1 cut(s) 503
MspI CCGG 2 cut(s) 6, 281
Mva1269I GAATGC 1 cut(s) 562
MwoI GCNNNNNNNGC 3 cut(s) 35, 136, 758
NcoI CCATGG 1 cut(s) 504
NdeII GATC 2 cut(s) 45, 480
NlaIII CATG 4 cut(s) 454, 508, 535, 643
NlaIV GGNNCC 2 cut(s) 423, 611
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 298
PceI AGGCCT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 49, 58, 221
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 3 cut(s) 76, 243, 365
Pfl23II CGTACG 1 cut(s) 149
PkrI GCNGC 4 cut(s) 28, 40, 325, 562
PpuMI RGGWCCY 2 cut(s) 422, 610
PshBI ATTAAT 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 488
Psp5II RGGWCCY 2 cut(s) 422, 610
PspLI CGTACG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 423, 611
PspPI GGNCC 3 cut(s) 422, 524, 610
PspPPI RGGWCCY 2 cut(s) 422, 610
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 3 cut(s) 413, 492, 630
SatI GCNGC 4 cut(s) 27, 39, 324, 561
Sau3AI GATC 2 cut(s) 45, 480
Sau96I GGNCC 3 cut(s) 422, 524, 610
SetI ASST 6 cut(s) 93, 187, 305, 358, 491, 615
SfcI CTRYAG 2 cut(s) 234, 566
SinI GGWCC 2 cut(s) 422, 610
Sse9I AATT 2 cut(s) 345, 780
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 2 cut(s) 39, 771
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 1 cut(s) 139
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 229, 517
TaiI ACGT 2 cut(s) 305, 491
TaqI TCGA 4 cut(s) 52, 93, 134, 224
TasI AATT 2 cut(s) 345, 780
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 76, 243, 365
Tru1I TTAA 3 cut(s) 413, 492, 630
Tru9I TTAA 3 cut(s) 413, 492, 630
TscAI CASTG 2 cut(s) 366, 558
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 3 cut(s) 26, 323, 560
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 235, 548
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 2 cut(s) 366, 558
VpaK11BI GGWCC 2 cut(s) 422, 610
VspI ATTAAT 1 cut(s) 413
XapI RAATTY 1 cut(s) 780
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.