Rmu_co8421641.1_g000001

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8421641.1
OG0009097
Physical Location & Seq
Reverse (-)
1 .. 1206
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8421641.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atggctggatatgggatgctgcttctagggccgtcgctgcatttctggttcaatttcatggccaaaacgtttccgaaacgggatatgttttcgacattgaagaaaatggcactggggcagggactttatggacctactatgactgtggtgttcttttctgtgaatgcatttctacaaggtgaaaatggtggagaagtttttgatcgtttaaagcgagacttggtccctacattgttaagtggtgttatgtattggccagtgtgtgattttatcacattcagattcattcctgtccatttgcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

101

Amino Acids

11.54

Weight (kDa)

9.3

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 68
AcoI YGGCCR 2 cut(s) 60, 254
AgsI TTSAA 2 cut(s) 52, 100
Alw26I GTCTC 1 cut(s) 210
AoxI GGCC 3 cut(s) 29, 60, 254
ApeKI GCWGC 2 cut(s) 19, 37
AspS9I GGNCC 3 cut(s) 29, 131, 223
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 2 cut(s) 131, 223
BalI TGGCCA 2 cut(s) 62, 256
BbvI GCAGC 2 cut(s) 6, 24
BceAI ACGGC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 20, 38
BlsI GCNGC 2 cut(s) 21, 39
Bme18I GGWCC 2 cut(s) 131, 223
BmgT120I GGNCC 3 cut(s) 29, 131, 223
BmiI GGNNCC 1 cut(s) 225
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 117, 257
BseGI GGATG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 117, 257
BseXI GCAGC 2 cut(s) 6, 24
BshFI GGCC 3 cut(s) 31, 62, 256
BslFI GGGAC 2 cut(s) 135, 209
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 135, 209
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 3 cut(s) 31, 62, 256
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 3 cut(s) 31, 62, 256
BspLI GGNNCC 1 cut(s) 225
BsrI ACTGG 2 cut(s) 117, 257
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 145
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 28, 37
BstV1I GCAGC 2 cut(s) 6, 24
BsuRI GGCC 3 cut(s) 31, 62, 256
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 110, 264
Cfr13I GGNCC 3 cut(s) 29, 131, 223
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 5, 31, 62, 256
CviKI_1 RGCY 4 cut(s) 5, 31, 62, 256
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 60, 254
Eco47I GGWCC 2 cut(s) 131, 223
EcoT22I ATGCAT 1 cut(s) 169
FaeI CATG 1 cut(s) 61
FaiI YATR 6 cut(s) 12, 59, 86, 129, 140, 248
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 2 cut(s) 135, 209
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 20, 38
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 20, 38
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 20, 38
HaeIII GGCC 3 cut(s) 31, 62, 256
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 282
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 75, 281
Hpy99I CGWCG 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 40, 167, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 37
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 31, 98, 104, 270
Lsp1109I GCAGC 2 cut(s) 6, 24
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 68
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 112
MlsI TGGCCA 2 cut(s) 62, 256
MluCI AATT 1 cut(s) 52
MluNI TGGCCA 2 cut(s) 62, 256
Mox20I TGGCCA 2 cut(s) 62, 256
Mph1103I ATGCAT 1 cut(s) 169
MscI TGGCCA 2 cut(s) 62, 256
MseI TTAA 2 cut(s) 209, 236
Msp20I TGGCCA 2 cut(s) 62, 256
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 28, 37
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 282
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 21, 39
Psp1406I AACGTT 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 3 cut(s) 29, 131, 223
PsyI GACNNNGTC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 209, 236
SatI GCNGC 2 cut(s) 20, 38
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 3 cut(s) 29, 131, 223
SetI ASST 3 cut(s) 71, 136, 181
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 2 cut(s) 131, 223
Sse9I AATT 1 cut(s) 52
SspMI CTAG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 92
TasI AATT 1 cut(s) 52
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 209, 236
Tru9I TTAA 2 cut(s) 209, 236
TscAI CASTG 2 cut(s) 117, 264
TseI GCWGC 2 cut(s) 19, 37
TspDTI ATGAA 2 cut(s) 46, 274
TspRI CASTG 2 cut(s) 117, 264
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 131, 223
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.