Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009097

Physical Location & Seq

Genomic Coordinates Forward (+)

8237362 .. 8242225

Gene Structure 4864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCACCACACACCTCCGACGCCGGGCCTCAAGGCCCAGCTCCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTCTTCCGTAAAGCCAAAGACTACGACCCCTCTCCTCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCCACCGGGATCGTCGGCTGGTACCTGGGCCTCGTCAAGAACCGGCCCATTCTCACCAAGAGCGTCACCGCCGCCCTCATCTACACCGCCGCCGATTTGTCCTCCCAGACTATAGCGAAATCGGATACTTATGATCCTGTGAGGACATTGCGGATGGCTGGATATGGGATGCTGATTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTTTTCGACATTGAAGAAAATGGCTATGGGGCAGGGACTTTATGGACCTACTATGACTGTTGTGTTCTTTTCTGTGAATGCATTTTTACAAGGTATTGTGCCATTGATGCATAAAGGTCGCCCTTTTTTCGTGATGAATGTGTTTGCAAAATTATATGTGCTTTGCTCGTGCCTCAGTTTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

217

Amino Acids

23.96

Weight (kDa)

10.27

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14860 AT4G33905
fragaria_vesca	FvH4_2g03950 FvH4_2g03950 FvH4_2g03950 FvH4_2g03950
malus_domestica	MD05G1096500.v1.1 MD10G1102900.v1.1
prunus_persica	Prupe.8G141000_v2.0.a1
pyrus_communis	pycom05g09540 pycom10g08860
rosa_chinensis	RchiOBHm_Chr6g0253001
rosa_laevigata	RLG00000015045
rosa_multiflora	Rmu_co8421641.1_g000001 Rmu_sc0002560.1_g000009
rosa_roxburghii	Rroxscaffold_7G00212210
rosa_rugosa	Rorug05G0542800
rosa_samantha	Rh6AG056600 Rh6BG051000 Rh6CG049000 Rh6DG044700
rosa_wichuraiana	Rw6G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	126
AclI	AACGTT	1 cut(s)	449
AclWI	GGATC	2 cut(s)	245, 356
AcoI	YGGCCR	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	86, 234
AgsI	TTSAA	2 cut(s)	433, 481
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
AlwI	GGATC	2 cut(s)	245, 356
AoxI	GGCC	6 cut(s)	88, 96, 256, 272, 410, 441
ApeKI	GCWGC	1 cut(s)	418
Asp718I	GGTACC	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	11, 128
AspS9I	GGNCC	6 cut(s)	88, 97, 256, 273, 410, 512
AsuC2I	CCSGG	2 cut(s)	87, 235
AsuHPI	GGTGA	4 cut(s)	25, 52, 274, 286
AvaII	GGWCC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BauI	CACGAG	1 cut(s)	634
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	2 cut(s)	65, 376
BceAI	ACGGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	87, 235
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	5 cut(s)	225, 228, 300, 318, 419
BlsI	GCNGC	5 cut(s)	226, 229, 301, 319, 420
Bme1390I	CCNGG	3 cut(s)	87, 235, 254
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	6 cut(s)	88, 97, 256, 273, 410, 512
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	3 cut(s)	87, 235, 254
BmsI	GCATC	2 cut(s)	387, 564
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	87, 235
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 234
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	387, 402
BseLI	CCNNNNNNNGG	2 cut(s)	86, 234
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	159, 175, 202
BseXI	GCAGC	1 cut(s)	405
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	6 cut(s)	90, 98, 258, 274, 412, 443
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	4 cut(s)	6, 86, 234, 271
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	86, 234
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	6 cut(s)	90, 98, 258, 274, 412, 443
Bsp143I	GATC	2 cut(s)	237, 361
BspANI	GGCC	6 cut(s)	90, 98, 258, 274, 412, 443
BspCNI	CTCAG	2 cut(s)	6, 654
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	2 cut(s)	245, 356
BspT107I	GGYRCC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	237, 361
BssNI	GRCGYC	1 cut(s)	83
BssSI	CACGAG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	2 cut(s)	185, 220
BstACI	GRCGYC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	14, 641
BstF5I	GGATG	2 cut(s)	387, 402
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 128
BstKTI	GATC	2 cut(s)	240, 364
BstMBI	GATC	2 cut(s)	237, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 574
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	3 cut(s)	85, 233, 252
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	6 cut(s)	90, 98, 258, 274, 412, 443
BtsCI	GGATG	2 cut(s)	387, 402
CfoI	GCGC	2 cut(s)	11, 128
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	6 cut(s)	88, 97, 256, 273, 410, 512
CseI	GACGC	2 cut(s)	91, 280
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	439
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	14, 641
DpnI	GATC	2 cut(s)	239, 363
DpnII	GATC	2 cut(s)	237, 361
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	185, 220
EarI	CTCTTC	2 cut(s)	185, 220
EciI	GGCGGA	3 cut(s)	178, 190, 211
Eco47I	GGWCC	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	252
EcoT22I	ATGCAT	2 cut(s)	550, 579
FaeI	CATG	1 cut(s)	442
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	1 cut(s)	438
FauI	CCCGC	2 cut(s)	44, 453
Fnu4HI	GCNGC	5 cut(s)	225, 228, 300, 318, 419
FokI	GGATG	2 cut(s)	394, 409
Fsp4HI	GCNGC	5 cut(s)	225, 228, 300, 318, 419
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	2 cut(s)	10, 127
GluI	GCNGC	5 cut(s)	225, 228, 300, 318, 419
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	90, 98, 258, 274, 412, 443
HapII	CCGG	4 cut(s)	6, 86, 234, 271
HgaI	GACGC	2 cut(s)	91, 280
HhaI	GCGC	2 cut(s)	11, 128
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	2 cut(s)	9, 126
HinP1I	GCGC	2 cut(s)	9, 126
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	4 cut(s)	6, 86, 234, 271
HphI	GGTGA	4 cut(s)	25, 52, 274, 286
Hpy188I	TCNGA	4 cut(s)	15, 81, 352, 456
Hpy188III	TCNNGA	2 cut(s)	265, 598
Hpy99I	CGWCG	3 cut(s)	85, 245, 418
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	4 cut(s)	421, 548, 577, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 574
HpyF3I	CTNAG	2 cut(s)	14, 641
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	2 cut(s)	9, 126
KpnI	GGTACC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	237, 361
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	1 cut(s)	405
LweI	GCATC	2 cut(s)	387, 564
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	239, 363
MboI	GATC	2 cut(s)	237, 361
MboII	GAAGA	6 cut(s)	30, 130, 172, 187, 207, 493
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	2 cut(s)	433, 617
MluNI	TGGCCA	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	104
Mox20I	TGGCCA	1 cut(s)	443
Mph1103I	ATGCAT	2 cut(s)	550, 579
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	4 cut(s)	6, 86, 234, 271
MspR9I	CCNGG	3 cut(s)	87, 235, 254
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	418, 574
NciI	CCSGG	2 cut(s)	87, 235
NdeII	GATC	2 cut(s)	237, 361
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	292
NsiI	ATGCAT	2 cut(s)	550, 579
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	226, 229, 301, 319, 420
Psp1406I	AACGTT	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	6 cut(s)	88, 97, 256, 273, 410, 512
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SatI	GCNGC	5 cut(s)	225, 228, 300, 318, 419
Sau3AI	GATC	2 cut(s)	237, 361
Sau96I	GGNCC	6 cut(s)	88, 97, 256, 273, 410, 512
ScrFI	CCNGG	3 cut(s)	87, 235, 254
SetI	ASST	8 cut(s)	79, 105, 123, 255, 452, 517, 562, 586
SfaNI	GCATC	2 cut(s)	387, 564
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	433, 617
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	3 cut(s)	85, 233, 252
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	473
TasI	AATT	2 cut(s)	433, 617
TauI	GCSGC	4 cut(s)	227, 230, 302, 320
TfiI	GAWTC	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	427, 617
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	512
XspI	CTAG	1 cut(s)	407
Zsp2I	ATGCAT	2 cut(s)	550, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.